Species-identification dots: A potent tool for developing genome microbiology

Gene

Volumn 261, Issue 2, 2000, Pages 243-250

  Naimuddin, Mohammed ^a   Kurazono, Takayuki ^b   Zhang, Yinghua ^c   Watanabe, Takehiro ^a   Yamaguchi, Masanori ^b   Nishigaki, Koichi ^a  

^a SAITAMA UNIVERSITY   (Japan)

^b Saitama Prefecture Institute of Hygiene   (Japan)

^c TAITEC Corporation   (Japan)

Author keywords

Genome distance; Genome profiling; Genome sequence space; Pattern similarity score; Structure stability

Indexed keywords

ARTICLE; BACTERIUM IDENTIFICATION; GEL ELECTROPHORESIS; GENETIC STABILITY; GENOME; GENOTYPE; MATHEMATICAL ANALYSIS; MICROBIOLOGICAL EXAMINATION; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SPECIES DIFFERENTIATION;

BASE SEQUENCE; DNA, BACTERIAL; ELECTROPHORESIS, GEL, PULSED-FIELD; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI O157; GENOME, BACTERIAL; GENOTYPE; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOFTWARE; SPECIES SPECIFICITY;

ESCHERICHIA COLI;

EID: 0034739813     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(00)00502-3     Document Type: Article

References (15)

1. Phylogenetic identification and in situ detection of individual microbial cells without cultivation
2. Genome profiling-establishment and practical evaluation of its methodology
3. Molecular typing of enterohemorrhagic Escherichia coli O157:H7 isolates in Japan by using pulsed-field gel electrophoresis
4. Octamer-based genome scanning distinguishes a unique subpopulation of Escherichia coli O157:H7 strains in cattle
5. Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA
6. DNA profiling: An approach of systematic characterization, classification, and comparison of genomic DNAs
7. Genome profiling: A realistic solution for genotype-based identification of species
8. Whole genome sequence-enabled prediction of sequences performed for random PCR products of Escherichia coli
9. Temperature-gradient gel electrophoresis for the detection of polymorphic DNA and for quantitative polymerase chain reaction
10. A simple method of preparing plant samples for PCR
11. Detecting base pair substitutions in DNA fragments by temperature-gradient gel electrophoresis
12. Thermal denaturation of double-stranded nucleic acids: Prediction of temperatures critical for gradient gel electrophoresis and polymerase chain reaction
13. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers
14. Cloning and nucleotide sequence analysis of gyrB of Bacillus cereus B. thuringiensis, B. mycoides, and B. anthracis and their application to the detection of B. cereus in rice
15. Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB rpoD and 16S rRNA genes