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Volumn 9, Issue 8, 2004, Pages 709-721

In vivo synthesis of Taf1p lacking the TAF N-terminal domain using alternative transcription or translation initiation sites

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; MESSENGER RNA; METHIONINE; PROTEIN DERIVATIVE; TATA BINDING PROTEIN ASSOCIATED FACTOR;

EID: 4444258596     PISSN: 13569597     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1356-9597.2004.00762.x     Document Type: Article
Times cited : (4)

References (43)
  • 1
    • 0033969766 scopus 로고    scopus 로고
    • TAFs revisited: More data reveal new twists and confirm old ideas
    • Albright, S.R. & Tjian, R. (2000) TAFs revisited: more data reveal new twists and confirm old ideas. Gene 242, 1-13.
    • (2000) Gene , vol.242 , pp. 1-13
    • Albright, S.R.1    Tjian, R.2
  • 2
    • 0033963045 scopus 로고    scopus 로고
    • TFIIA-TAF regulatory interplay: NMR evidence for overlapping binding sites on TBP
    • Bagby, S., Mal, T.K., Liu, D., Raddatz, E., Nakatani, Y. & Ikura, M. (2000) TFIIA-TAF regulatory interplay: NMR evidence for overlapping binding sites on TBP. FEBS Lett. 468, 149-154.
    • (2000) FEBS Lett. , vol.468 , pp. 149-154
    • Bagby, S.1    Mal, T.K.2    Liu, D.3    Raddatz, E.4    Nakatani, Y.5    Ikura, M.6
  • 3
    • 0030987325 scopus 로고    scopus 로고
    • Structure-function analysis of TAF130: Identification and characterization of a high-affinity TATA-binding protein interaction domain in the N terminus of yeast TAF (II) 130
    • Bai, Y., Perez, G.M., Beechem., J.M. & Weil, P.A. (1997) Structure-function analysis of TAF130: identification and characterization of a high-affinity TATA-binding protein interaction domain in the N terminus of yeast TAF (II) 130. Mol. Cell. Biol. 17, 3081-3093.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 3081-3093
    • Bai, Y.1    Perez, G.M.2    Beechem, J.M.3    Weil, P.A.4
  • 4
    • 0036781068 scopus 로고    scopus 로고
    • Ribosome components are associated with sites of transcription
    • Brogna, S., Sato, T.A. & Rosbash, M. (2002) Ribosome components are associated with sites of transcription. Mol. Cell 10, 93-104.
    • (2002) Mol. Cell , vol.10 , pp. 93-104
    • Brogna, S.1    Sato, T.A.2    Rosbash, M.3
  • 5
    • 0030013203 scopus 로고    scopus 로고
    • Biochemistry and structural biology of transcription factor IID (TFIID)
    • Burley, S.K. & Roeder, R.G. (1996) Biochemistry and structural biology of transcription factor IID (TFIID). Annu. Rev. Biochem. 65, 769-799.
    • (1996) Annu. Rev. Biochem. , vol.65 , pp. 769-799
    • Burley, S.K.1    Roeder, R.G.2
  • 6
    • 0037108159 scopus 로고    scopus 로고
    • The RNA polymerase II core promoter: A key component in the regulation of gene expression
    • Butler, J.E. & Kadonaga, J.T. (2002) The RNA polymerase II core promoter: a key component in the regulation of gene expression. Genes Dev. 16, 2583-2592.
    • (2002) Genes Dev. , vol.16 , pp. 2583-2592
    • Butler, J.E.1    Kadonaga, J.T.2
  • 7
    • 0033200098 scopus 로고    scopus 로고
    • DNA binding site selection by RNA polymerase II TAFs: A TAF (II), 250-TAF (II), 150 complex recognizes the initiator
    • Chalkley, G.E. & Verrijzer, C.P. (1999) DNA binding site selection by RNA polymerase II TAFs: a TAF (II), 250-TAF (II), 150 complex recognizes the initiator. EMBO J. 18, 4835-4845.
    • (1999) EMBO J. , vol.18 , pp. 4835-4845
    • Chalkley, G.E.1    Verrijzer, C.P.2
  • 8
    • 0037018851 scopus 로고    scopus 로고
    • The TBP-Inhibitory Domain of TAF145 Limits the Effects of Nonclassical Transcriptional Activators
    • Cheng, J.X., Nevado, J., Lu, Z. & Ptashne, M. (2002) The TBP-Inhibitory Domain of TAF145 Limits the Effects of Nonclassical Transcriptional Activators. Curr. Biol. 12, 934-937.
    • (2002) Curr. Biol. , vol.12 , pp. 934-937
    • Cheng, J.X.1    Nevado, J.2    Lu, Z.3    Ptashne, M.4
  • 9
    • 0029973944 scopus 로고    scopus 로고
    • Assembly of the isomerized TFIIA-TFIID-TATA ternary complex is necessary and sufficient for gene activation
    • Chi, T. & Carey, M. (1996) Assembly of the isomerized TFIIA-TFIID-TATA ternary complex is necessary and sufficient for gene activation. Genes Dev. 10, 2540-2550.
    • (1996) Genes Dev. , vol.10 , pp. 2540-2550
    • Chi, T.1    Carey, M.2
  • 12
    • 0036785497 scopus 로고    scopus 로고
    • The Ccr4-not complex and yTAF1 (yTaf (II), 130p/yTaf (II), 145p) show physical and functional interactions
    • Deluen, C., James, N., Maillet, L., et al. (2002) The Ccr4-not complex and yTAF1 (yTaf (II), 130p/yTaf (II), 145p) show physical and functional interactions. Mol. Cell. Biol. 22, 6735-6749.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 6735-6749
    • Deluen, C.1    James, N.2    Maillet, L.3
  • 13
    • 0033023949 scopus 로고    scopus 로고
    • Transcriptional activation by artificial recruitment in yeast is influenced by promoter architecture and downstream sequences
    • Gaudreau, L., Keaveney, M., Nevado, J., et al. (1999) Transcriptional activation by artificial recruitment in yeast is influenced by promoter architecture and downstream sequences. Proc. Natl. Acad. Sci. USA 96, 2668-2673.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 2668-2673
    • Gaudreau, L.1    Keaveney, M.2    Nevado, J.3
  • 14
    • 0031844678 scopus 로고    scopus 로고
    • Involvement of TFIID and USA components in transcriptional activation of the human immunodeficiency virus promoter by NF-kappaB and Sp1
    • Guermah, M., Malik, S. & Roeder, K.G. (1998) Involvement of TFIID and USA components in transcriptional activation of the human immunodeficiency virus promoter by NF-kappaB and Sp1. Mol. Cell. Biol. 18, 3234-3244.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 3234-3244
    • Guermah, M.1    Malik, S.2    Roeder, K.G.3
  • 15
    • 0034812122 scopus 로고    scopus 로고
    • Positive and negative TAF (II) functions that suggest a dynamic TFIID structure and elicit synergy with traps in activator-induced transcription
    • Guermah, M., Tao, Y. & Roeder, R.G. (2001) Positive and negative TAF (II) functions that suggest a dynamic TFIID structure and elicit synergy with traps in activator-induced transcription. Mol. Cell. Biol. 21, 61882-6894.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 6882-6894
    • Guermah, M.1    Tao, Y.2    Roeder, R.G.3
  • 16
    • 0035839002 scopus 로고    scopus 로고
    • Coupled transcription and translation within nuclei of mammalian cells
    • Iborra, F.J., Jackson, D.A. & Cook, P.R. (2001) Coupled transcription and translation within nuclei of mammalian cells. Science 293, 1139-1142.
    • (2001) Science , vol.293 , pp. 1139-1142
    • Iborra, F.J.1    Jackson, D.A.2    Cook, P.R.3
  • 17
    • 0037440662 scopus 로고    scopus 로고
    • Mutations in the histone fold domain of the TAF12 gene show synthetic lethality with the TAF1 gene lacking the TAF N-terminal domain (TAND) by different mechanisms from those in the SPT15 gene encoding the TATA box-binding protein (TBP)
    • Kobayashi, A., Miyake, T., Kawaichi, M. & Kokubo, T. (2003) Mutations in the histone fold domain of the TAF12 gene show synthetic lethality with the TAF1 gene lacking the TAF N-terminal domain (TAND) by different mechanisms from those in the SPT15 gene encoding the TATA box-binding protein (TBP). Nucl. Acids Res. 31, 1261-1274.
    • (2003) Nucl. Acids Res. , vol.31 , pp. 1261-1274
    • Kobayashi, A.1    Miyake, T.2    Kawaichi, M.3    Kokubo, T.4
  • 18
    • 0035808448 scopus 로고    scopus 로고
    • Mutations in the TATA-binding protein, affecting transcriptional activation, show synthetic lethality with the TAF145 gene lacking the TAF N-terminal domain in Saccharomyces cerevisiae
    • Kobayashi, A., Miyake, T., Ohyama, Y., Kawaichi, M. & Kokubo, T. (2001) Mutations in the TATA-binding protein, affecting transcriptional activation, show synthetic lethality with the TAF145 gene lacking the TAF N-terminal domain in Saccharomyces cerevisiae. J. Biol. Chem. 276, 395-405.
    • (2001) J. Biol. Chem. , vol.276 , pp. 395-405
    • Kobayashi, A.1    Miyake, T.2    Ohyama, Y.3    Kawaichi, M.4    Kokubo, T.5
  • 19
    • 0031883573 scopus 로고    scopus 로고
    • The yeast TAF145 inhibitory domain and TFIIA competitively bind to TATA- binding protein
    • Kokubo, T., Swanson, M.J., Nishikawa, J.I., Hinnebusch, A.G. & Nakatani, Y. (1998) The yeast TAF145 inhibitory domain and TFIIA competitively bind to TATA- binding protein. Mol. Cell. Biol. 18, 1003-1012.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 1003-1012
    • Kokubo, T.1    Swanson, M.J.2    Nishikawa, J.I.3    Hinnebusch, A.G.4    Nakatani, Y.5
  • 20
    • 0028355555 scopus 로고
    • Interaction between the N-terminal domain of the 230 kDa subunit and the TATA box-binding subunit ofTFIID negatively regulates TATA box-binding
    • Kokubo, K., Yamashita, S., Horikoshi, M., Roeder, R.G. & Nakatani, Y. (1994) Interaction between the N-terminal domain of the 230 kDa subunit and the TATA box-binding subunit ofTFIID negatively regulates TATA box-binding. Proc. Natl. Acad. Sci. USA 91, 3520-3524.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 3520-3524
    • Kokubo, K.1    Yamashita, S.2    Horikoshi, M.3    Roeder, R.G.4    Nakatani, Y.5
  • 21
    • 0034691184 scopus 로고    scopus 로고
    • A role of transcriptional activators as antirepressors for the autoinhibitory activity of TATA box binding of transcription factor IID
    • Kotani, T., Banno, K., Ikura, M., et al. (2000) A role of transcriptional activators as antirepressors for the autoinhibitory activity of TATA box binding of transcription factor IID. Proc. Natl. Acad. Sci. USA 97, 7178-7183.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 7178-7183
    • Kotani, T.1    Banno, K.2    Ikura, M.3
  • 22
    • 0033610789 scopus 로고    scopus 로고
    • Identification of highly conserved amino-terminal segments of dTAFII230 and yTAFII145 that are functionally interchangeable for inhibiting TBP-DNA interactions in vitro and in promoting yeast cell growth in vivo
    • Kotani, T., Miyake, T., Tsukihashi, Y., et al. (1998) Identification of highly conserved amino-terminal segments of dTAFII230 and yTAFII145 that are functionally interchangeable for inhibiting TBP-DNA interactions in vitro and in promoting yeast cell growth in vivo. J. Biol. Chem. 273, 32254-32264.
    • (1998) J. Biol. Chem. , vol.273 , pp. 32254-32264
    • Kotani, T.1    Miyake, T.2    Tsukihashi, Y.3
  • 23
    • 0033061571 scopus 로고    scopus 로고
    • Initiation of translation in prokaryotes and eukaryotes
    • Kozak, M. (1999) Initiation of translation in prokaryotes and eukaryotes. Gene 234, 187-208.
    • (1999) Gene , vol.234 , pp. 187-208
    • Kozak, M.1
  • 24
    • 0037121050 scopus 로고    scopus 로고
    • Pushing the limits of the scanning mechanism for initiation of translation
    • Kozak, M. (2002) Pushing the limits of the scanning mechanism for initiation of translation. Gene 299, 1-34.
    • (2002) Gene , vol.299 , pp. 1-34
    • Kozak, M.1
  • 25
    • 0023613953 scopus 로고
    • Rapid and efficient site-specific mutagenesis without phenotypic selection
    • Kunkel, T.A., Roberts, J.D. & Zakour, R.A. (1987) Rapid and efficient site-specific mutagenesis without phenotypic selection. Meth Enzymol, 154, 367-382.
    • (1987) Meth. Enzymol. , vol.154 , pp. 367-382
    • Kunkel, T.A.1    Roberts, J.D.2    Zakour, R.A.3
  • 26
    • 0032523882 scopus 로고    scopus 로고
    • Regulation of gene expression by TBP-associated proteins
    • Lee, T.I. & Young, R.A. (1998) Regulation of gene expression by TBP-associated proteins. Genes Dev. 12, 1398-1408.
    • (1998) Genes Dev. , vol.12 , pp. 1398-1408
    • Lee, T.I.1    Young, R.A.2
  • 27
    • 0037162292 scopus 로고    scopus 로고
    • Selective recruitment of TAFs by yeast upstream activating sequences. Implications for eukaryotic promoter structure
    • Li, X.Y., Bhaumik, S.R., Zhu, X., et al. (2002) Selective recruitment of TAFs by yeast upstream activating sequences. Implications for eukaryotic promoter structure. Curr. Biol. 12, 1240-1244.
    • (2002) Curr. Biol. , vol.12 , pp. 1240-1244
    • Li, X.Y.1    Bhaumik, S.R.2    Zhu, X.3
  • 28
    • 0028269517 scopus 로고
    • A mechanism for TAFs in transcriptional activation: Activation domain enhancement of TFIID-TFIIA-promoter DNA complex formation
    • Lieberman, P.M. & Berk, A.J. (1994) A mechanism for TAFs in transcriptional activation: activation domain enhancement of TFIID-TFIIA-promoter DNA complex formation. Genes Dev. 8, 995-1006.
    • (1994) Genes Dev. , vol.8 , pp. 995-1006
    • Lieberman, P.M.1    Berk, A.J.2
  • 29
    • 0032483558 scopus 로고    scopus 로고
    • Solution structure of a TBP-TAF (II), 230 complex: Protein mimicry of the minor groove surface of the TATA box unwound by TBP
    • Liu, D., Ishima, R., Tong, K.I., et al. (1998) Solution structure of a TBP-TAF (II), 230 complex: protein mimicry of the minor groove surface of the TATA box unwound by TBP. Cell 94, 573-583.
    • (1998) Cell , vol.94 , pp. 573-583
    • Liu, D.1    Ishima, R.2    Tong, K.I.3
  • 30
    • 0035816647 scopus 로고    scopus 로고
    • c-Jun binds the N terminus of human TAF (II), 250 to derepress RNA polymerase II transcription in vitro
    • Lively, T.N., Ferguson, H.A., Galasinski, S.K., Seto, A.G. & Goodrich, J.A. (2001) c-Jun binds the N terminus of human TAF (II), 250 to derepress RNA polymerase II transcription in vitro. J. Biol. Chem. 276, 25582-25588.
    • (2001) J. Biol. Chem. , vol.276 , pp. 25582-25588
    • Lively, T.N.1    Ferguson, H.A.2    Galasinski, S.K.3    Seto, A.G.4    Goodrich, J.A.5
  • 31
    • 4244018956 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae
    • (eds F.M. Ausubel, R. Brent, R.E. Kingston, D. D. Moore, J.G. Seidman, J.A. Smith & K. Struhl), New York: John Wiley & Sons
    • Lundblack, V. (1998) Saccharomyces cerevisiae. In: Current Protocols in Molecular Biology 13 (eds F.M. Ausubel, R. Brent, R.E. Kingston, D. D. Moore, J.G. Seidman, J.A. Smith & K. Struhl), pp. 13.10.11-13.13.19. New York: John Wiley & Sons.
    • (1998) Current Protocols in Molecular Biology , vol.13
    • Lundblack, V.1
  • 32
    • 0036239962 scopus 로고    scopus 로고
    • Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast
    • Mencia, M., Moqtaderi, Z., Geisberg, J.V., Kuras, L. & Struhl, K. (2002) Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast. Mol. Cell 9, 823-833.
    • (2002) Mol. Cell , vol.9 , pp. 823-833
    • Mencia, M.1    Moqtaderi, Z.2    Geisberg, J.V.3    Kuras, L.4    Struhl, K.5
  • 33
    • 0035141313 scopus 로고    scopus 로고
    • Region of yeast TAF 130 required for TFIID to associate with promoters
    • Mencia, M. & Struhl, K. (2001) Region of yeast TAF 130 required for TFIID to associate with promoters. Mol. Cell. Biol. 21, 1145-1154.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 1145-1154
    • Mencia, M.1    Struhl, K.2
  • 34
    • 0028953840 scopus 로고
    • Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds
    • Mumberg, D., Muller, R. & Funk, M. (1995) Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds. Gene 156, 119-122.
    • (1995) Gene , vol.156 , pp. 119-122
    • Mumberg, D.1    Muller, R.2    Funk, M.3
  • 35
    • 0031024494 scopus 로고    scopus 로고
    • Drosophila TAF (II), 230 and the transcriptional activator VP16 bind competitively to the TATA box-binding domain of the TATA box-binding protein
    • Nishikawa, J., Kokubo, T., Horikoshi, M., Roeder, R.G. & Nakatani, Y. (1997) Drosophila TAF (II), 230 and the transcriptional activator VP16 bind competitively to the TATA box-binding domain of the TATA box-binding protein. Proc. Natl. Acad. Sci. USA 94, 85-90.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 85-90
    • Nishikawa, J.1    Kokubo, T.2    Horikoshi, M.3    Roeder, R.G.4    Nakatani, Y.5
  • 36
    • 0029808220 scopus 로고    scopus 로고
    • Topology and reorganization of a human TFIID-promoter complex
    • Oelgeschlager, T., Chiang, C.M. & Roeder, R.G. (1996) Topology and reorganization of a human TFIID-promoter complex. Nature 382, 735-738.
    • (1996) Nature , vol.382 , pp. 735-738
    • Oelgeschlager, T.1    Chiang, C.M.2    Roeder, R.G.3
  • 37
    • 0032486264 scopus 로고    scopus 로고
    • Transcription factor IIA derepresses TATA-binding protein (TBP) - Associated factor inhibition of TBP-DNA binding
    • Ozer, J., Mitsouras, K., Zerby, D., Carey, M. & Lieberman, P.M. (1998) Transcription factor IIA derepresses TATA-binding protein (TBP) - associated factor inhibition of TBP-DNA binding. J. Biol. Chem. 273, 14293-14300.
    • (1998) J. Biol. Chem. , vol.273 , pp. 14293-14300
    • Ozer, J.1    Mitsouras, K.2    Zerby, D.3    Carey, M.4    Lieberman, P.M.5
  • 38
    • 0034609446 scopus 로고    scopus 로고
    • Control of gene expression through regulation of the TATA-binding protein
    • Pugh, B.F. (2000) Control of gene expression through regulation of the TATA-binding protein. Gene 255, 1-14.
    • (2000) Gene , vol.255 , pp. 1-14
    • Pugh, B.F.1
  • 39
    • 0032450899 scopus 로고    scopus 로고
    • Role of general and gene-specific cofactors in the regulation of eukaryotic transcription
    • Roeder, R.G. (1998) Role of general and gene-specific cofactors in the regulation of eukaryotic transcription. Cold Spring Harb Symp Quant. Biol. 63, 201-218.
    • (1998) Cold Spring Harb. Symp. Quant. Biol. , vol.63 , pp. 201-218
    • Roeder, R.G.1
  • 40
    • 0036318573 scopus 로고    scopus 로고
    • Molecular Characterization of Saccharomyces cerevisiae TFIID
    • Sanders, S.L., Garbett, K.A. & Weil, P.A. (2002) Molecular Characterization of Saccharomyces cerevisiae TFIID. Mol. Cell. Biol. 22, 6000-6013.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 6000-6013
    • Sanders, S.L.1    Garbett, K.A.2    Weil, P.A.3
  • 41
    • 0029053720 scopus 로고
    • Revolutions in rapid amplification of cDNA ends: New strategies for polymerase chain reaction cloning of full-length cDNA ends
    • Schaefer, B.C. (1995) Revolutions in rapid amplification of cDNA ends: new strategies for polymerase chain reaction cloning of full-length cDNA ends. Anal. Biochem. 227, 255-273.
    • (1995) Anal. Biochem. , vol.227 , pp. 255-273
    • Schaefer, B.C.1
  • 42
    • 0242412917 scopus 로고    scopus 로고
    • Identification of a novel TBP-binding region at the amino terminus of the Saccharomyces cerevisiae TAF1 protein
    • Takahata, S., Ryu, H., Ohtsuki, K., Kasahara, K., Kawaichi, M. & Kokubo, T. (2003) Identification of a novel TBP-binding region at the amino terminus of the Saccharomyces cerevisiae TAF1 protein. J. Biol. Chem. 278, 45888-45902.
    • (2003) J. Biol. Chem. , vol.278 , pp. 45888-45902
    • Takahata, S.1    Ryu, H.2    Ohtsuki, K.3    Kasahara, K.4    Kawaichi, M.5    Kokubo, T.6
  • 43
    • 0037087628 scopus 로고    scopus 로고
    • A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription
    • Tora, L. (2002) A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription. Genes Dev. 16, 673-675.
    • (2002) Genes Dev. , vol.16 , pp. 673-675
    • Tora, L.1


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