Using immobilized metal affinity chromatography, two-dimensional electrophoresis and mass spectrometry to identify hepatocellular proteins with copper-binding ability

Journal of Proteome Research

Volumn 3, Issue 4, 2004, Pages 834-840

  Smith, Scott D ^a   She, Yi Min ^a   Roberts, Eve A ^a,c   Sarkar, Bibudhendra ^a,b  

^a HOSPITAL FOR SICK CHILDREN RESEARCH INSTITUTE   (Canada)

^b HOSPITAL FOR SICK CHILDREN   (Canada)

^c UNIVERSITY OF TORONTO   (Canada)

Author keywords

Copper binding proteins; Hep G2; Peroxiredoxin; Proteomics

Indexed keywords

COPPER; LIVER PROTEIN; METALLOPROTEIN; PEROXIREDOXIN; PROTEOME;

ARTICLE; BINDING AFFINITY; CELL STRAIN HEPG2; CONTROLLED STUDY; CYTOSOL; GEL ELECTROPHORESIS; HUMAN; HUMAN CELL; HUMAN TISSUE; IMMOBILIZED METAL AFFINITY CHROMATOGRAPHY; MASS SPECTROMETRY; METAL BINDING; MICROSOME; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEOMICS;

CARRIER PROTEINS; CHROMATOGRAPHY, AFFINITY; COPPER; CYTOSOL; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; HEPATOCYTES; HUMANS; METALLOPROTEINS; MICROSOMES; PROTEOME; PROTEOMICS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 4444219776     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr049941r     Document Type: Article

References (42)

1. Rae, T. D.; Schmidt, P. J.; Pufahl, R. A.; Culotta, V. C.; O'Halloran, T. V. Science 1999, 284, 805-808.
2. Harris, E. D. Annu. Rev. Nutr. 2000, 20, 291-310.
3. Huffman, D. L.; O'Halloran, T. V. Annu. Rev. Biochem. 2001, 70, 677-701.
4. DiDonato, M.; Sarkar, B. Biochim. Biophys. Acta 1997, 1360, 3-16.
5. Hornshaw, M. P.; McDermott, J. R.; Candy J. M. Biochem. Biophys. Res. Commun. 1995, 207, 621-629.
6. Narindrasorasak, S.; Yao, P.; Sarkar, B. Biochem. Biophys. Res. Commun. 2003, 311, 401-414.
7. Knowles, B. B.; Howe, C. C.; Aden, D. P. Science 1980, 280, 497-499.
8. Seow, T. K.; Liang, R. C.; Leow, C. K.; Chung, M. C. Proteomics 2001, 1, 1249-1263.
9. Sanchez, J. C.; Appel, R. D.; Golaz, O.; Pasquali, C. Electrophoresis 1995, 16, 1131-1151.
10. She, Y. M.; Narindrasorasak, S.; Yang, S.; Spitale, N.; Roberts, E. A.; Sarkar, B. Mol. Cell. Proteomics 2003, 2, 1306-1318.
11. Laemmli, U.K. Nature 1970, 227, 1080-1085.
12. Shevchenko, A.; Wilm, M.; Vorm, O.; Mann, M. Anal. Chem. 1996, 68, 850-858.
13. Dreyfuss, G.; Kim, V. N.; Kataoka, N. Nat. Mol. Cell. Biol. 2002, 3, 195-205.
14. Kamma, H.; Portman, D. S.; Dreyfuss, G. Exp. Cell. Res. 1995, 221, 187-196.
15. Katayarna, A.; Tsujii, A.; Wada, A.; Nishino, T.; Ishihama, A. Eur. J. Biochem. 2002, 269, 2403-2413.
16. Fatemi, N.; Sarkar, B. Inorg. Chim. Acta 2002, 339, 179-187.
17. Klomp, L. W.; Lin, S. J.; Yuan, D. S.; Klausner, R. D.; Culotta, V. C.; Gitlin, J. D. J. Biol. Chem. 1997, 272, 9221-9226.
18. Culotta, V. C.; Klomp, L. W.; Strain, J.; Casareno, R. L.; Krems, B.; Gitlin, J. D. J. Biol. Chem. 1997, 272, 23 469-23 472.
19. Wernimont, A. K.; Huffman, D. L.; Lamb, A. L.; O'Halloran, T. V.; Rosenzweig, A. C. Nat. Struct. Biol. 2000, 7, 766-771.
20. Martin, J. L. Structure 1995, 3, 245-250.
21. Holmgren, A. Antioxid. Redox. Signal 2000, 2, 811-820.
22. Hansen, P.; Andersson, L.; Lindeberg, G. J. Chromatogr. A 1996, 723, 51-59.
23. Chae, H. Z.; Kim, H. J.; Kang, S. W.; Rhee, S. G. Diabetes Res. Clin. Pract. 1999, 45, 101-112.
24. Neumann, C. A.; Krause, D. S.; Carman, C. V.; Das, S.; Dubey, D. P.; Abraham, J. L. Nature 2003, 424, 561-565.
25. Kim, H.; Lee, T. H.; Park, E. S.; Suh, J. M.; Park, S. J.; Chung, H. K.; Kwon, O.; Y.; Kim, Y. K.; Ro, H. K.; Shong, M. J. Biol. Chem. 2000, 275, 18 266-18 270.
26. Hirotsu, S.; Abe, Y.; Okada, K.; Nagahara, N.; Hori, H.; Nishino, T.; Hakoshima, T. Proc. Natl. Acad. Sci. 1999, 96, 12 333-12 338.
27. Schroder, E.; Littlechild, J.; Lebedev, A. A.; Errington, N.; Vagin, A. A.; Isupov, M. N. Structure 2000, 8, 605-615.
28. Lee, S. P.; Hwang, Y. S.; Kim, Y. J.; Kwon, K. S.; Kim, H. J.; Kim, K.; Chae, H. Z. J. Biol. Chem. 2001, 276, 29 826-29 832.
29. Fratelli, M.; Demol, H.; Puype, M.; Casagrande, S.; Eberini, I.; Salmon, M.; Bonetto, V.; Mengozzi, M.; Duffieux, F.; Miclet, E.; Bachi, A.; Vanderkerckhove, J.; Gianazza, E.; Ghezzi, P. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 3505-3510.
30. Lind, C.; Gerdes, R.; Hamnell, Y.; Schuppe-Koistinen, I.; Brockenhuus von Louenhielm, H.; Holmgren, A.; Cotgreave, I. A. Arch. Biochem. Biophys. 2002, 406, 229-240.
31. Fratelli, M.; Demol, H.; Puype, M.; Casagrande, S.; Villa, P.; Eberini, I.; Vandekerckhove, J. Proteomics 2003, 3, 1154-1161.
32. Herald, V. L.; Heazlewood, J. L.; Day, D. A.; Millar, A. H. FEBS Lett. 2003, 537, 96-100.
33. Sulkowski, E. Bioessays 1989, 10, 170-175.
34. Ren, D.; Penner, N. A.; Slentz, B. E.; Mirzaei, H.; Regnier, F. J. Proteome Res. 2003, 2, 321-329.
35. Gharahdaghi, F.; Weinberg, C. R.; Meagher, D. A.; Imai, B. S.; Mische, S. M. Electrophoresis 1999, 20, 601-605.
36. Shevchenko, A.; Loboda, A.; Shevchenko, A.; Ens, W.; Standing, K. G. Anal. Chem. 2000, 72, 2132-2141.
37. Baldwin, M. A.; Medzihradszky, K. F.; Lock, C. M.; Fisher, B.; Settineri, T. A.; Burlingame, A. L. Anal. Chem. 2001, 73, 1707-1720.
38. Santoni, V.; Molloy, M.; Rabilloud, T. Electrophoresis. 2000, 21, 1054-1070.
39. Vulpe, C.; Levinson, B.; Whitney, S.; Packman, S.; Gitschier, J. Nat. Genet. 1993, 3, 7-13.
40. Chelly, J.; Tumer, Z.; Tonnesen, T.; Petterson, A.; Ishikawa-Brush, Y.; Tommerup, N.; Horn, N.; Monaco, A. P. Nat. Genet. 1993, 3, 14-19.
41. Mercer, J. F.; Livingston, J.; Hall, B.; Paynter, J. A.; Begy, C.; Chandrasekharappa, S.; Lockhart, P.; Grimes, A.; Bhave, M.; Siemieniak, D.; Glover, T. W. Nat. Genet. 1993, 3, 20-25.
42. Parge, H. E.; Hallewell, R. A.; Tainer, J. A. Proc. Natl. Acad. Sci. U.S.A. 1992, 89, 6109-6113.