Sulfurihydrogenibium kristjanssonii sp. nov., a hydrogen- and sulfur-oxidizing thermophile isolated from a terrestrial Icelandic hot spring

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 5, 2008, Pages 1153-1158

  Flores, Gilberto E ^a   Liu, Yitai ^a   Ferrera, Isabel ^a   Beveridge, Terry J ^b   Reysenbach, Anna Louise ^a  

^a PORTLAND STATE UNIVERSITY   (United States)

^b UNIVERSITY OF GUELPH   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; GUANINE; HYDROGEN; RNA 16S; SODIUM CHLORIDE; SUCCINIC ACID; RIBOSOME DNA; SULFUR;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; CARBON SOURCE; CONTROLLED STUDY; DNA CONTENT; GENE SEQUENCE; GENUS; ICELAND; MORPHOLOGY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; STRAIN IDENTIFICATION; SULFUR OXIDIZING BACTERIUM; SULFURIHYDROGENIBIUM KRISTJANSSONII; TAXONOMY; TEMPERATURE DEPENDENCE; THERMAL SPRING; THERMOPHILE; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; GRAM NEGATIVE CHEMOLITHOTROPHIC AND METHANE PRODUCING BACTERIA; HEAT; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; OXIDATION REDUCTION REACTION; PHENOTYPE; PHYSIOLOGY; RNA GENE; SPECIES DIFFERENCE;

SULFURIHYDROGENIBIUM;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; GRAM-NEGATIVE CHEMOLITHOTROPHIC BACTERIA; HEAT; HOT SPRINGS; HYDROGEN; ICELAND; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; SULFUR;

EID: 44349181159     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65570-0     Document Type: Article

References (29)

1. Aguiar, P., Beveridge, T. J. & Reysenbach, A.-L. (2004). Sulfurihydrogenibium azorense sp. nov., a thermophilic hydrogen-oxidizing microaerophile from terrestrial hot springs in the Azores. Int J Syst Evol Microbiol 54, 33-39.
2. Barion, S., Franchi, M., Gallori, E. & Di Giulio, M. (2007). The first lines of divergence in the Bacteria domain were the hyperthermophilic organisms, the Thermotogales and the Aquificales, and not the mesophilic Planctomycetales. Biosystems 87, 13-19.
3. Beveridge, T. J., Moyles, D. & Harris, R. (2007). Electron microscopy. In Methods for General and Molecular Microbiology, 2nd edn, pp. 54-81. Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, L. Snyder, T. M. Schmidt & G. A. Marzluf. Washington, DC: American Society for Microbiology.
4. 2 or formate uptake. Appl Environ Microbiol 55, 1735-1741.
5. Burggraf, S., Olsen, G. J., Stetter, K. O. & Woese, C. R. (1992). A phylogenetic analysis of Aquifex pyrophilus. Syst Appl Microbiol 15, 352-356.
6. 2 utilization. Antonie van Leeuwenhoek 81, 263-270.
7. Di Giulio, M. (2003a). The ancestor of the Bacteria domain was a hyperthermophile. J Theor Biol 224, 277-283.
8. Di Giulio, M. (2003b). The universal ancestor and the ancestor of the Bacteria were hyperthermophiles. J Mol Evol 57, 721-730.
9. Di Giulio, M. (2003c). The universal ancestor was a thermophile or a hyperthermophile: tests and further evidence. J Theor Biol 221, 425-436.
10. Eder, W. & Huber, R. (2002). New isolates and physiological properties of the Aquificales and description of Thermocrinis albus ap. nov. Extremophiles 6, 309-318.
11. 2-oxidizing methanogen. Appl Environ Microbiol 45, 265-274.
12. Ferrera, I., Longhorn, S., Banta, A. B., Liu, Y., Preston, D. & Reysenbach, A.-L. (2007). Diversity of 16S rRNA gene, ITS region and aclB gene of the Aquificales. Extremophiles 11, 57-64.
13. Götz, D., Banta, A., Beveridge, T. J., Rushdi, A. I., Simoneit, B. R. T. & Reysenbach, A.-L. (2002). Persephonella marina gen. nov., sp nov. and Persephonella guaymasensis sp. nov., two novel, thermophilic, hydrogen-oxidizing microaerophiles from deep-sea hydrothermal vents. Int J Syst Evol Microbiol 52, 1349-1359.
14. Hetzer, A., Morgan, H. W., McDonald, I. R. & Daughney, C. J. (2007). Microbial life in Champagne Pool, a geothermal spring in Waiotapu, New Zealand. Extremophiles 11, 605-614.
15. Huber, R., Eder, W., Heldwein, S., Wanner, G., Huber, H., Rachel, R. & Stetter, K. O. (1998). Thermocrinis ruber gen. nov., sp. nov., a pink-filament-forming hyperthermophilic bacterium isolated from Yellowstone National Park. Appl Environ Microbiol 64, 3576-3583.
16. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
17. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
18. Nakagawa, S., Shtaih, Z., Banta, A., Beveridge, T. J., Sako, Y. & Reysenbach, A.-L. (2005). Sulfurihydrogenibium yellowstonense sp. nov., an extremely thermophilic, facultatively heterotrophic, sulfuroxidizing bacterium from Yellowstone National Park, and emended descriptions of the genus Sulfurihydrogenibium, Sulfurihydrogenibium subterraneum and Sulfurihydrogenibium azorense. Int J Syst Evol Microbiol 55, 2263-2268.
19. O'Neill, A. H., Liu, Y., Ferrera, I., Beveridge, T. J. & Reysenbach, A.-L. (2008). Sulfurihydrogenibium rodmanii sp. nov., a sulfur-oxidizing chemolithoautotroph from the Uzon Caldera, Kamchatka, Russia, and emended description of the genus Sulfurihydrogenibium. Int J Syst Evol Microbiol 58, 1147-1152.
20. Pitulle, C., Yang, Y. Q., Marchiani, M., Moore, E. R. B., Siefert, J. L., Aragno, M., Jurtshuk, P. & Fox, G. E. (1994). Phylogenetic position of the genus Hydrogenobacter. Int J Syst Bacteriol 44, 620-626.
21. Purcell, D., Sompong, U., Yim, L. C., Barraclough, T. G., Peerapornpisal, Y. & Pointing, S. B. (2007). The effects of temperature, pH and sulphide on the community structure of hyperthermophilic streamers in hot springs of northern Thailand. FEMS Microbiol Ecol 60, 456-466.
22. Reysenbach, A.-L., Ehringer, M. & Hershberger, K. (2000). Microbial diversity at 83 C in Calcite Springs, Yellowstone National Park: another environment where the Aquificales and "Korarchaeota" coexist. Extremophiles 4, 61-67.
23. Reysenbach, A.-L.,Banta, A., Civello, S.,Daly, J.,Mitchel, K., Lalonde, S., Konhauser, K., Rodman, S., Rustenholtz, K. & Takacs-Vesbach, C. (2005). The Aquificales of Yellowstone National Park. In Geothermal Biology and Geochemistry in Yellowstone National Park: Workshop Proceedings from the Thermal Biology Institute's Yellowstone National Park Conference, October 2003, pp. 129-142. Edited by W. P. Inskeep & T. R. McDermott. Bozeman, MT: Montana State University.
24. Skirnisdottir, S., Hreggvidsson, G. O., Hjorleifsdottir, S., Marteinsson, V. T., Petursdottir, S. K., Holst, O. & Kristjansson, J. K. (2000). Influence of sulfide and temperature on species composition and community structure of hot spring microbial mats. Appl Environ Microbiol 66, 2835-2841.
25. Spear, J. R., Walker, J. J., McCollom, T. M. & Pace, N. R. (2005). Hydrogen and bioenergetics in the Yellowstone geothermal ecosystem. Proc Natl Acad Sci U S A 102, 2555-2560.
26. Stöhr, R., Waberski, A., Völker, H., Tindall, B. J. & Thomm, M. (2001). Hydrogenothermus marinus gen. nov., sp. nov., a novel thermophilic hydrogen-oxidizing bacterium, recognition of Calderobacterium hydrogenophilum as a member of the genus Hydrogenobacter and proposal of the reclassification of Hydrogenobacter acidophilus as Hydrogenobaculum acidophiulm gen. nov., comb. nov., in the phylum 'Hydrogenobacter/Aquifex'. Int J Syst Evol Microbiol 51, 1853-1862.
27. Swofford, D. L. (2003). PAUP*: Phylogenetic analysis using parsimony (and other methods). Sunderland, MA: Sinauer Associates.
28. Takacs, C. D., Ehringer, M., Favre, R., Cermola, M., Eggertsson, G., Palsdottir, A. & Reysenbach, A.-L. (2001). Phylogenetic characterization of the blue filamentous bacterial community from an Icelandic geothermal spring. FEMS Microbiol Ecol 35, 123-128.
29. Takai, K., Kobayashi, Y., Nealson, K. H. & Horikoshi, K. (2003). Sulfurihydrogenibium subterraneum gen. nov., sp. nov., from a subsurface hot aquifer. Int J Syst Evol Microbiol 53, 823-827.