Reconstruction of the Sudden Oak Death epidemic in California through microsatellite analysis of the pathogen Phytophthora ramorum

Molecular Ecology

Volumn 17, Issue 11, 2008, Pages 2755-2768

  Mascheretti, S ^a   Croucher, P J P ^a   Vettraino, A ^b   Prospero, S ^c   Garbelotto, M ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF TUSCIA   (Italy)

^c UMR 1202 BIOGECO   (France)

Author keywords

Genetic structure; Microsatellite; Network analysis; Phytophthora ramorum; Spatial autocorrelation; Sudden Oak Death

Indexed keywords

ALGAL DNA; MICROSATELLITE DNA;

ARTICLE; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; GENOTYPE; OAK; PHYTOPHTHORA; PLANT DISEASE; UNITED STATES;

CALIFORNIA; DNA, ALGAL; GENOTYPE; MICROSATELLITE REPEATS; PHYTOPHTHORA; PLANT DISEASES; QUERCUS; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

PHYTOPHTHORA; PHYTOPHTHORA RAMORUM;

EID: 44249084217     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2008.03773.x     Document Type: Article

References (48)

1. Artzy-Randrup Y, Stone L (2005) Generating uniformly distributed random networks. Physical Review E, doi:.
2. Aylor DE (1999) Biophysical scaling and the passive dispersal of fungus spores: relationship to integrated pest management strategies. Agricultural and Forest Meteorology, 63, 133 147.
3. Aylor DE, Taylor GS (1982) Aerial dispersal and drying of Peronospora tabacina conidia in tobacco shade tents. Proceedings of the National Academy of Sciences, USA, 79, 697 700.
4. Bonnet E, Van De Peer Y (2002) ZT: a software tool for simple and partial Mantel tests. Journal of Statistical Software, 7, 1 12.
5. Brasier C, Kirk S (2004) Production of gametangia by Phytophthora ramorum in vitro. Mycological Research, 108, 823 827.
6. Bruvo R, Michiels NK, D' Souza TG, Schulenburg H (2004) A simple method for the calculation of microsatellite genotype distance irrespective of ploidy level. Molecular Ecology, 13, 2101 2106.
7. Davidson JM, Warres S, Garbelotto M et al 2003) Sudden oak death and associated diseases caused by Phytophthora ramorum. Online Plant Health Progress (PHP-2003-0707-01-DG).
8. Davidson JM, Wickland AC, Patterson HA et al 2005) Transmission of Phytophthora ramorum in mixed-evergreen forest in California. Phytopathology, 95, 587 596.
9. Diniz-Filho JA, Telles MPD (2002) Spatial autocorrelation analysis and the identification of operational units for conservation in continuous populations. Conservation Biology, 16, 924 935.
10. Dobrowolski MP, Tommerup IC, Blakeman HD, O'brien PA (2002) Non-Mendelian inheritance revealed in a genetic analysis of sexual progeny of Phytophthora cinnamomi with microsatellite markers. Fungal Genetics and Biology, 35, 197 212.
11. Dunham SM, O'dell TE, Molina R (2006) Spatial analysis of within-population microsatellite variability reveals restricted gene flow in the Pacific golden chanterelle (Cantharellus formosus). Mycologia, 98, 250 259.
12. Erwin DC, Ribeiro DC (1996) Phytophthora diseases worldwide. American Phytopathology Society. APS Press, St Paul, MN.
13. Excoffier L, Schneider S (2005) Arlequin ver 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47 50.
14. Excoffier L, Smouse PE (1994) Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony. Genetics, 136, 343 359.
15. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479 491.
16. Felsenstein J (2005) phylip (Phylogeny Inference Pakage), Version 3.6. Distributed by the author.
17. Forster H, Tyler BM, Coffey BM (1994) Phythopthora sojae races have arisen by clonal evolution and by rare outcrosses. Molecular Plant Microbe Interactions, 7, 780 791.
18. Garbelotto M, Rizzo DM (2005) A California-based chronological review (1995-2004) of research on Phytophthora ramorum, the causal agent of sudden oak death. Phytopathologia Mediterranea, 33, 1 17.
19. Garbelotto M, Davidson JM, Ivors K et al 2003) Non-oak native plants are main hosts for sudden oak death pathogen in California. California Agriculture, 57, 18 23.
20. Goheen EM, Hansen EM, Kanaskie A et al 2002a) Plant species naturally infected by Phytophthora ramorum in Oregon forests. Sudden Oak Death Science Symposium. University of California, Berkeley.
21. Goheen EM, Hansen EM, Kanaskie A et al 2002b) Sudden Oak Death caused by Phytophthora ramorum. Oregon. Plant Disease, 86, 441 441.
22. Grunwald NJ, Goss EM, Larse MM et al 2008) First Report of the European Lineage of Phytophthora ramorum on Viburnum and Osmanthus spp. in a California Nursery. Plant Disease, 92, 314.
23. Hansen EM, Reeser PW, Sutton W, Winton L, Osterbauer N (2003) First report of A1 mating type of Phytophthora ramorum in North America. Plant Disease, 87, 1267.
24. Hardy OJ, Vekemans X (2002) SPAGeDI: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes, 2, 618 620.
25. Ivors KL, Hayden KJ, Bonants PJ et al 2004) AFLP and phylogenetic analyses of North American and European populations of Phytophthora ramorum. Mycology Research, 108, 378 392.
26. Ivors K, Garbelotto M, Vries ID et al 2006) Microsatellite markers identify three lineages of Phytophthora ramorum in US nurseries, yet single lineages in US forest and European nursery populations. Molecular Ecology, 15, 1493 1505.
27. Kroon LPNM, Verstappen ECP, Kox LFF, Bonants PJM (2004) A rapid diagnostic test to distinguish between American and European populations of Phythopthora ramorum. Phytopathology, 94, 613 620.
28. Liu B, Marcia LG, Hu S, Ristaino JB (2007) Effect of prior tillage and soil fertility amendments on dipersal of Phytophthora capsici and infection of pepper. European Journal of Plant Pathology, 120, 273 287.
29. Maloney PE, Lynch SC, Kane SF et al 2005) Establishment of an emerging generalist pathogen in redwood forest communities. Journal of Ecology, 93, 899 905.
30. Mantel NA, Valand RS (1970) A technique for nonparametric multivariate analysis. Biometrics, 26, 547 458.
31. Meentemeyer R, Rizzo DM, Mark W, Lotz E (2004) Mapping the risk of establishment and spread of sudden oak death in California. Forest Ecology and Management, 195 214.
32. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583 590.
33. Olarte R, Garbelotto M (2005) Genotyping Phytophthora ramorum isolates from U.S. nurseries using PC-RFLP and microsatellite analysis. Sudden Oak Death Science Symposium II. US Forest Service, Monterey, CA.
34. Prospero S, Black JA, Winton LM (2004) Isolation and characterization of microsatellite markers in Phytophthora ramorum, the causal agent of sudden oak death. Molecular Ecology Notes, 4, 672 674.
35. Prospero S, Hansen EM, Grunwald NJ, Winton LM (2007) Population dynamics of the sudden oak death pathogen Phytophthora ramorum in Oregon from 2001 to 2004. Molecular Ecology, 16, 2958 2973.
36. Raymond ML, Rousset F (1995) An exact test for population differentiation. Evolution, 49, 1280 1283.
37. Rizzo DM, Garbelotto M (2003) Sudden oak death: endangering California and Oregon forest ecosystems. Frontiers in Ecology and the Environment, 1, 197 204.
38. Rizzo DM, Garbelotto M, Davidson JM et al 2002) Phytophthora ramorum as the cause of extensive mortality of Quercus spp. and Lithocarpus densiflora in California. Plant Disease, 86, 205 214.
39. Rizzo DM, Garbelotto M, Hansen EM (2005) Phytophthora ramorum: integrative research and management of an emerging pathogen in California and Oregon forests. Annual Reviews of Phytopathology, 43, 309 335.
40. Roewer L, Croucher PJP, Willuweit S et al 2005) Signature of recent historical events in the European Y-chromosomal STR haplotype distribution. Human Genetics, 116, 279 291.
41. Sokal RR (1983) A phylogenetic analysis of the Caminalcules. 4. Congruence and character stability. Systematic Zoology, 32, 259 275.
42. Sokal RR, Oden NL (1978) Spatial autocorrelation in biology. 1. Methodology. Biological Journal of the Linnean Society, 10, 199 228.
43. Sokal RR, Oden NL, Thomson BA (1997) A simulation study of microevolutionary inference by spatial autocorrelation analysis. Biological Journal of the Linnean Society, 65, 41 62.
44. Stone L, Roberts A (1990) The checkerboard score and species distributions. Oecologia, 85, 74 79.
45. Sunseri MA, Johnson DA (2002) Survival of detached sporangia of Phytophthora infestans exposed to ambient, relatively dry atmospheric conditions. American Journal of Potato Research, 79, 443.
46. Tyler BM, Tripathy S, Zhang X et al 2006) Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science, 313, 1261 1266.
47. USDA-Aphis (2007) Phytophthora ramorum; quarantine and regulation. Federal Register, 72, 8585 8604.
48. Werres S, Marwitz R, In' T Veld WA et al 2001) Phytophthora ramorum sp. nov., a new pathogen on Rhododendron and Viburnum. Mycological Research, 105, 1155 1165.