Structure-specific statistical mapping of white matter tracts

NeuroImage

Volumn 41, Issue 2, 2008, Pages 448-461

  Yushkevich, Paul A ^a   Zhang, Hui ^a   Simon, Tony J ^b   Gee, James C ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Deformable models; Diffusion tensor imaging; DS22q11.2; Medial representation; Skeletons; Statistical mapping; White matter

Indexed keywords

ARTICLE; BRAIN MAPPING; CHILD; CHROMOSOME 22Q; CHROMOSOME DELETION; CHROMOSOME DELETION 22Q; CLINICAL ARTICLE; DIFFUSION; DIFFUSION TENSOR IMAGING; GEOMETRY; HUMAN; HUMAN EXPERIMENT; IMAGE ANALYSIS; IMAGE DISPLAY; IMAGE PROCESSING; IMAGE RECONSTRUCTION; NEUROIMAGING; NORMAL HUMAN; PRIORITY JOURNAL; STATISTICAL ANALYSIS; WHITE MATTER;

BRAIN; BRAIN MAPPING; DIFFUSION MAGNETIC RESONANCE IMAGING; HUMANS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MODELS, NEUROLOGICAL;

EID: 44149096448     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2008.01.013     Document Type: Article

References (56)

1. Alexander D.C., Pierpaoli C., Basser P.J., and Gee J.C. Spatial transformations of diffusion tensor magnetic resonance images. IEEE Trans. Med. Imag. 20 11 (2001) 1131-1139
2. Ardekani B.A., Kershaw J., Braun M., and Kanno I. Automatic detection of the mid-sagittal plane in 3-d brain images. IEEE Trans. Med. Imag. 16 6 (1997) 947-952
3. Arsigny V., Fillard P., Pennec X., and Ayache N. Log-Euclidean metrics for fast and simple calculus on diffusion tensors. Magn. Reson. Med. 56 2 (2006) 411-421
4. Ashburner J., and Friston K.J. Voxel-based morphometry-the methods. NeuroIimage 11 6 Pt 1 (2000) 805-821
5. Avants B., and Gee J.C. Geodesic estimation for large deformation anatomical shape averaging and interpolation. NeuroImage 23 Suppl 1 (2004) S139-S150
6. Awate S., Zhang H., and Gee J. A fuzzy, nonparametric segmentation framework for DTI and MRI analysis: with applications to dti-tract extraction. IEEE Trans. Med. Imag. 26 11 (2007) 1525-1536
7. Basser P.J., Mattiello J., and LeBihan D. Estimation of the effective self-diffusion tensor from the nmr spin echo. J. Magn. Reson. B 103 3 (1994) 247-254
8. Benjamini Y., and Yekutieli D. The control of the false discovery rate in multiple testing under dependency. Ann. Stat. 29 4 (2001) 1165-1188
9. Blum H. A Transformation for Extracting New Descriptors of Shape. In Models for the Perception of Speech and Visual Form (1967), MIT Press
10. Cao Y., Miller M.I., Winslow R.L., and Younes L. Large deformation diffeomorphic metric mapping of vector fields. IEEE Trans. Med. Imag. 24 9 (2005) 1216-1230
11. Cascio C., Styner M., Smith R.G., Poe M.D., Gerig G., Hazlett H.C., Jomier M., Bammer R., and Piven J. Reduced relationship to cortical white matter volume revealed by tractography-based segmentation of the corpus callosum in young children with developmental delay. Am. J. Psychiatry 163 12 (2006) 2157-2163
12. Conturo T.E., Lori N.F., Cull T.S., Akbudak E., Snyder A.Z., Shimony J.S., McKinstry R.C., Burton H., and Raichle M.E. Tracking neuronal fiber pathways in the living human brain. Proc. Natl. Acad. Sci. U. S. A. 96 18 (1999) 10422-10427
13. Corouge I., Fletcher P.T., Joshi S., Gouttard S., and Gerig G. Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis. Med. Image Anal. 10 5 (2006) 786-798
14. Damon J. On the smoothness and geometry of boundaries associated with skeletal structures II: geometry in the Blum case. Compositio Mathematica 140 6 (2004) 1657-1674
15. Damon J. Determining the geometry of boundaries of objects from medial data. Int. J. Comput. Vis. 63 1 (2005) 45-64
16. Eliez S., Schmitt J.E., White C.D., and Reiss A.L. Children and adolescents with velocardiofacial syndrome: a volumetric mri study. Am. J. Psychiatry 157 3 (2000) 409-415
17. Eriksson S.H., Rugg-Gunn F.J., Symms M.R., Barker G.J., and Duncan J.S. Diffusion tensor imaging in patients with epilepsy and malformations of cortical development. Brain 124 Pt 3 (2001) 617-626
18. Fischl B., Sereno M.I., and Dale A.M. Cortical surface-based analysis. II: inflation, flattening, and a surface-based coordinate system. NeuroImage 9 2 (1999) 195-207
19. Guimond A., Meunier J., and Thirion J.P. Average brain models: a convergence study. Comput. Vis. Image Underst., 1077-3142 77 9 (2000) 192-210
20. Horsfield M.A., and Jones D.K. Applications of diffusion-weighted and diffusion tensor mri to white matter diseases - a review. NMR Biomed. 15 7-8 (2002) 570-577
21. Jones D.K., Symms M.R., Cercignani M., and Howard R.J. The effect of filter size on vbm analyses of dt-mri data. NeuroImage 26 2 (2005) 546-554
22. Jones D.K., Travis A.R., Eden G., Pierpaoli C., and Basser P.J. Pasta: pointwise assessment of streamline tractography attributes. Magn. Reson. Med. 53 6 (2005) 1462-1467
23. Joshi S., Pizer S., Fletcher P., Yushkevich P., Thall A., and Marron J. Multi-scale deformable model segmentation and statistical shape analysis using medial descriptions. IEEE Trans. Med. Imag. 21 5 (2002) 538-550
24. Joshi S., Davis B., Jomier M., and Gerig G. Unbiased diffeomorphic atlas construction for computational anatomy. NeuroImage 23 Suppl 1 (2004) S151-S160
25. Kates W.R., Burnette C.P., Jabs E.W., Rutberg J., Murphy A.M., Grados M., Geraghty M., Kaufmann W.E., and Pearlson G.D. Regional cortical white matter reductions in velocardiofacial syndrome: a volumetric mri analysis. Biol. Psychiatry 49 8 (2001) 677-684
26. Kindlmann G., Tricoche X., and Westin C.F. Delineating white matter structure in diffusion tensor mri with anisotropy creases. Med. Image Anal. 11 5 (2007) 492-502
27. Lenglet C., Rousson M., and Deriche R. Dti segmentation by statistical surface evolution. IEEE Trans. Med. Imag. 25 6 (2006) 685-700
28. Lin F., Yu C., Jiang T., Li K., Li X., Qin W., Sun H., and Chan P. Quantitative analysis along the pyramidal tract by length-normalized parameterization based on diffusion tensor tractography: application to patients with relapsing neuromyelitis optica. NeuroImage 33 1 (2006) 154-160
29. Loop C., and DeRose T. Generalized b-spline surfaces of arbitrary topology. Computer Graphics (ACM SIGGRAPH Proceedings) (1990) 347-356
30. Maddah III M., W. M. W., Warfield S.K., Westin C.F., and Grimson W.E.L. Probabilistic clustering and quantitative analysis of white matter fiber tracts. In International Conference on Information Processing in Medical Imaging (2007) 372-383
31. Mangin J.F., Poupon C., Clark C., Bihan D.L., and Bloch I. Distortion correction and robust tensor estimation for mr diffusion imaging. Med. Image Anal. 6 3 (2002) 191-198
32. Mori S., and van Zijl P.C.M. Fiber tracking: principles and strategies - a technical review. NMR Biomed. 15 7-8 (2002) 468-480
33. Mori S., Crain B.J., Chacko V.P., and van Zijl P.C. Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging. Ann. Neurol. 45 2 (1999) 265-269
34. Mori S., Kaufmann W.E., Davatzikos C., Stieltjes B., Amodei L., Fredericksen K., Pearlson G.D., Melhem E.R., Solaiyappan M., Raymond G.V., Moser H.W., and van Zijl P.C.M. Imaging cortical association tracts in the human brain using diffusion-tensor-based axonal tracking. Magn. Reson. Med. 47 2 (2002) 215-223
35. Näf M., Kübler O., Kikinis R., Shenton M., and Székely G. Characterization and recognition of 3D organ shape in medical image analysis using skeletonization. Workshop on Mathematical Methods in Biomedical Image Analysis. IEEE Comput. Soc. (1996) 139-150
36. Nichols T.E., and Holmes A.P. Nonparametric permutation tests for functional neuroimaging: a primer with examples. Hum. Brain Mapp. 15 1 (2002) 1-25
37. O'Donnell L.J., and Westin C.F. Automatic tractography segmentation using a high-dimensional white matter atlas. IEEE Trans. Med. Imag. 26 11 (2007) 1562-1575
38. Pizer S.M., Fritsch D.S., Yushkevich P.A., Johnson V.E., and Chaney E.L. Segmentation, registration, and measurement of shape variation via image object shape. IEEE Trans. Med. Imag. 18 10 (1999) 851-865
39. Shewchuk J.R. Triangle: engineering a 2D quality mesh generator and Delaunay triangulator. In: Lin M.C., and Manocha D. (Eds). Applied Computational Geometry: Towards Geometric Engineering, volume 1148 of Lecture Notes in Computer Science (1996), Springer-Verlag 203-222 From the First ACMWorkshop on Applied Computational Geometry
40. Simon T.J., Ding L., Bish J.P., McDonald-McGinn D.M., Zackai E.H., and Gee J. Volumetric, connective, and morphologic changes in the brains of children with chromosome 22q11.2 deletion syndrome: an integrative study. NeuroImage 25 1 (2005) 169-180
41. Smith S.M. Fast robust automated brain extraction. Hum. Brain Mapp. 17 3 (2002) 143-155
42. Smith S.M., Jenkinson M., Johansen-Berg H., Rueckert D., Nichols T.E., Mackay C.E., Watkins K.E., Ciccarelli O., Cader M.Z., Matthews P.M., and Behrens T.E.J. Tract-based spatial statistics: voxelwise analysis of multi-subject diffusion data. NeuroImage 31 4 (2006) 1487-1505
43. Styner M., Gerig G., Joshi S., and Pizer S. Automatic and robust computation of 3D medial models incorporating object variability. Inte. J. Comput. Vis. 55 2 (2003) 107-122
44. Sun, H., Yushkevich, P.A., Zhang, H., Cook, P.A., Duda, J.T., Simon, T.J., Gee, J.C., in press. Shape-based normalization of the corpus callosum for DTI-based connectivity analysis. IEEE Tran. Med. Img.
45. Terriberry T.B., and Gerig G. A continuous 3-d medial shape model with branching. In International Workshop on Mathematical Foundations of Computational Anatomy MFCA-2006, in conjunction with MICCAI 2006 (2006)
46. Thompson P.M., and Toga A.W. Detection, visualization and animation of abnormal anatomic structure with a deformable probabilistic brain atlas based on random vector field transformations. Med. Image Anal. 1 4 (1997) 271-294
47. Thompson P.M., Vidal C., Giedd J.N., Gochman P., Blumenthal J., Nicolson R., Toga A.W., and Rapoport J.L. Mapping adolescent brain change reveals dynamic wave of accelerated gray matter loss in very early-onset schizophrenia. PNAS 98 20 (2001) 11650-11655
48. Wakana S., Jiang H., Nagae-Poetscher L.M., van Zijl P.C.M., and Mori S. Fiber tract-based atlas of human white matter anatomy. Radiology 230 1 (2004) 77-87
49. Weinberger K.Q., and Saul L.K. Unsupervised learning of image manifolds by semidefinite programming. Int. J. Comp. Vis. 70 1 (2006) 77-90
50. Xu G. Discrete laplace-beltrami operators and their convergence. Comput. Aided Geom. Des. 21 8 (2004) 767-784
51. Yushkevich P., Fletcher P.T., Joshi S., Thall A., and Pizer S.M. Continuous medial representations for geometric object modeling in 2D and 3D. Image Vis. Comput. 21 1 (2003) 17-28
52. Yushkevich P.A., Piven J., Hazlett H.C., Smith R.G., Ho S., Gee J.C., and Gerig G. User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliability. NeuroImage 31 3 (2006) 1116-1128
53. Yushkevich P.A., Zhang H., and Gee J. Continuous medial representation for anatomical structures. IEEE Trans. Med. Imag. 25 2 (2006) 1547-1564
54. Zhang H., Yushkevich P.A., Alexander D.C., and Gee J.C. Deformable registration of diffusion tensor MR images with explicit orientation optimization. Med. Image Anal. (2006)
55. Zhang H., Yushkevich P.A., Rueckert D., and Gee J.C. Unbiased white matter atlas construction using diffusion tensor images. Medical Image Computing and Computer-Assisted Intervention, MICCAI (2007)
56. Zhang, H., Avants, B.B., Yushkevich, P.A., Woo, J.H., Wang, S., McCluskey, L.F., Elman, L.B., Melhem, E.R., Gee, J.C., in press. High-dimensional spatial normalization of diffusion tensor images improves the detection of white matter differences in amyotrophic lateral sclerosis. IEEE Transactions on Medical Imaging - Special Issue on Computational Diffusion MRI.