Genetic structure of the endangered species Pinna nobilis (Mollusca: Bivalvia) inferred from mtDNA sequences

Biologia

Volumn 63, Issue 3, 2008, Pages 412-417

  Katsares, Vassilios ^a   Tsiora, Anna ^a   Galinou Mitsoudi, Sofia ^a   Imsiridou, Anastasia ^a  

^a ALEXANDER TECHNOLOGICAL EDUCATIONAL INSTITUTE OF THESSALONIKI   (Greece)

Author keywords

16S rDNA; Bivalvia; COI; Genetic structure; MtDNA; Pinna nobilis; Sequencing

Indexed keywords

ATRINA FRAGILIS; BIVALVIA; MOLLUSCA; PINNA NOBILIS;

EID: 43949109587     PISSN: 00063088     EISSN: 13369563     Source Type: Journal    
DOI: 10.2478/s11756-008-0061-8     Document Type: Article

References (34)

1. rd Int. Conf. Mediterranean Coastal Environment, Vol. 2, Qawra, Malta.
2. Cameron R.A. 1986. Introduction to the invertebrate larval biology workshop: a brief background. Bull. Mar. Sci. 32: 145-161.
3. Canapa A., Marota I., Rollo F. & Olmo E. 1996. Phylogenetic analysis of Veneridae (Bivalvia): comparison of molecular and palaeontological data. J. Mol. Evol. 43: 517-522.
4. Canapa A., Barucca M., Marinelli A. & Olmo E. 2000. Molecular data from the 16S rRNA gene for the phylogeny of Pectinidae (Mollusca: Bivalvia). J. Mol. Evol. 50: 93-97.
5. Cho E.S., Joung C.G., Sohn S.G., Kim C.D. & Han S.J. 2007. Population genetic structure of the ark shell Scapharca broughtonii Schrenck from Korea, China, and Russia based on COI gene sequences. Mar. Biotech. 9: 203-216.
6. Excoffier L., Laval G. & Schneider S. 2007. Arlequin 3.11: An Integrated Software Package for Population Genetics Data Analysis. Computational and Molecular Population Genetics Lab, Institute of Zoology, University of Berne. http://cmpg.unibe.ch/software/arlequin3 (accessed 20.3.2007).
7. F.A.O. 1987. Fischer W., Bauchot M-L. & Schneider M. (eds), Fiches FAO d'identification des espéces pour les besoins de la pȩche. (Révision 1). Méditerranée et mer Noire. Zone de pȩche 37. Volume I. Végétaux et Invertébrés. Publication préparée par la FAO, résultat d'un accord entre la FAO et la Commission des Communautés Européennes (Projet GCP/INT/422/EEC) financée conjointement par ces deux organisations. FAO, Rome.
8. Galinou-Mitsoudi S., Vlahavas G. & Papoutsi O. 2006. Population study of the protected bivalve Pinna nobilis (Linnaeus, 1758) in the Thermaikos gulf (N Aegean Sea). J. Biol. Res. 5: 47-53.
9. García-March J.R. 2006. Status of the research on Pinna nobilis L., 1758 in France and Spain. AQUA2006; 2006 May 9-13; Firenze (Florence). Italy. http://www.was.org/Meetings/SessionAbstracts (accessed 1.4.2007).
10. García-March J.R., Garcia-Carrascosa A.M., Cantero A.L.P. & Wang Y.G. 2007. Population structure, mortality and growth of Pinna nobilis Linnaeus, 1758 (Mollusca, Bivalvia) at different depths in Moraira bay (Alicante, Western Mediterranean). Mar. Biol. 150: 861-871.
11. Gaulejac de B. 1995. Successive hermaphrodism with asynchronous maturation of Pinna nobilis (L.) (Bivalvia: Pterioidea). C. R. Acad. Sci. Ser. III Sci. Vie 318: 99-103.
12. Grew P.M., Krueges C.C. & Aquadro C.F. 1993. Mitochondrial DNA extraction for reliable PCR detection of fish polymorphic markers and transgenes. Mol. Mar. Biol. Biotechnol. 5: 295-298.
13. Hall T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
14. Katsanevakis S. 2005. Population ecology of the endangered fan mussel Pinna nobilis in a marine lake. Endangered Species Research 1: 1-9.
15. Kimura M. 1980. A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
16. Kumar S., Tamura K. & Nei M. 2004. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Briefings in Bioinformatics 5: 150-163.
17. Kojima S., Segawa R., Hashimoto J. & Ohta S. 1997. Molecular phylogeny of vestimentiferans collected around Japan, revealed by the nucleotide sequences of mitochondrial DNA. Mar. Biol. 127: 507-513.
18. Kojima S., Segawa R., Kobayashi T., Hashimoto T., Fujikura K., Hashimoto J. & Ohta S. 1995. Phylogenetic relationships among species of Calyptogena (Bivalvia: Vesicomyidae) collected around Japan revealed by nucleotide sequences of mitochondrial genes. Mar. Biol. 122: 401-407.
19. Matsumoto M. 2003. Phylogenetic analysis of the subclass Pteriomorphia (Bivalvia) from mtDNA COI sequences. Mol. Phyl. Evol. 27: 429-440.
20. Moreteau J.C. & Vicente N. 1982. Evolution d' une population de Pinna nobilis L. (Mollusca, Bivalvia). Malacologia 22: 341-345.
21. Nittis K. & Lascaratos A. 1992. Modelling the general circulation of the Aegean Sea. Rapports et Procčs-verbaux des Réunions Commission Internationale pour l' Exploration Scientifique de la Mer Mé diterranée 33: 225.
22. Palumbi S.R. 1996. Nucleic acids II: The polymerase chain reaction, pp. 205-247. In: Hillis D.M., Moritz C. & Mable B.K. (eds), Molecular Systematics, Sinauer Associates, Inc Sunderland, Maryland.
23. Rawson P.D. & Hilbish T.J. 1995. Evolutionary relationships among the male and female Mitochondrial DNA lineages in the Mytilus edulis species complex. Mol. Biol. Evol. 12: 893-901.
24. Reichow D. & Smith M.J. 2001. Microsatellites reveal high levels of gene flow among populations of the California squid Loligo opalescens. Mol. Ecol. 10: 1101-1109.
25. Richardson C.A., Peharda M., Kennedy H., Kennedy P. & Onofri V. 2004. Age, growth rate and season of recruitment of Pinna nobilis (L.) in the Croatian Adriatic determined from Mg:Ca and Sr:Ca shell profiles. J. Exp. Mar. Biol. Ecol. 299: 1-16.
26. Rivera M.A.J., Kelley C.D. & Roderick G.K. 2004. Subtle population genetic structure in the Hawaiian grouper, Epinephelus quernus (Serranidae) as revealed by mitochondrial DNA analysis. Biol. J. Linn. Soc. 81: 449-468.
27. Rozen S. & Skaletsky H. 1998. Primer 3. http://www-genome.wi.mit.edu/ genome_software/other/primer3.html (accessed 21.11.2006).
28. Saavedra C. & Pena J.B. 2003. Phylogenetic relationships of European and Australasian king scallops (Pecten spp.) based on partial 16S ribosomal RNA gene sequences. Aquaculture 235: 153-166.
29. Saccone C., De Giorgi C., Gissi C., Pesole G. & Reyes A. 1999. Evolutionary genomics in Metazoa: The mitochondrial DNA as a model system. Gene 238: 195-209.
30. Seed R. 1969. The ecology of Mytilus edulis L. (Lamelibranchiata) on exposed rocky shores. 1. Breeding and settlement. Oecologia 3: 277-316.
31. Šiletić T. & Peharda M. 2003. Population study of the fan shell Pinna nobilis L. in Malo and Veliko Jezero of the Mljet National Park (Adriatic Sea). Sci. Mar. 67: 91-98.
32. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F. & Higgins D.G. 1997. The CLUSTAL X windows interface: Flexible strategies for multiple alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
33. Yokogawa K. 1996. Genetic divergence in two forms of pen shell Atrina pectinata. Jpn. J. Malac. 55: 25-39.
34. Yu X.Y., Mao Y., Wang M.F., Zhou L. & Gui J.F. 2004. Genetic heterogeneity analysis and RAPD marker detection among four forms of Atrina pectinata Linnaeus. J. Shellfish Res. 23: 165-171.