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Volumn 40, Issue 6, 2008, Pages 1460-1473

Changes in microbial communities in an apple orchard and its adjacent bush soil in response to season, land-use, and violet root rot infestation

Author keywords

Apple orchard; Boundary bush; Season; Soil microbial community; Violet root rot

Indexed keywords

BACTERIA; BIODIVERSITY; FRUITS; FUNGI; POPULATION DYNAMICS;

EID: 43649108916     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2007.12.024     Document Type: Article
Times cited : (24)

References (42)
  • 1
    • 0034969766 scopus 로고    scopus 로고
    • Development of a sensitive and rapid method for measurement of total microbial activity using fluorescein diacetate (FDA) in a range of soils
    • Adam G., and Duncan H. Development of a sensitive and rapid method for measurement of total microbial activity using fluorescein diacetate (FDA) in a range of soils. Soil Biology & Biochemistry 33 (2001) 943-951
    • (2001) Soil Biology & Biochemistry , vol.33 , pp. 943-951
    • Adam, G.1    Duncan, H.2
  • 2
    • 0032936017 scopus 로고    scopus 로고
    • Seasonal changes in soil microbial communities along a fertility gradient of temperate grasslands
    • Bardgett R.D., Lovell R.D., Hobbs P.J., and Jarvis S.C. Seasonal changes in soil microbial communities along a fertility gradient of temperate grasslands. Soil Biology & Biochemistry 31 (1999) 1021-1030
    • (1999) Soil Biology & Biochemistry , vol.31 , pp. 1021-1030
    • Bardgett, R.D.1    Lovell, R.D.2    Hobbs, P.J.3    Jarvis, S.C.4
  • 3
    • 0036078096 scopus 로고    scopus 로고
    • Surface and subsurface microbial biomass, community structure and metabolic activity as a function of soil depth and season
    • Blume E., Bischoff M., Reichert J.M., Moorman T., Konopka A., and Turco R.F. Surface and subsurface microbial biomass, community structure and metabolic activity as a function of soil depth and season. Applied Soil Ecology 20 (2002) 171-181
    • (2002) Applied Soil Ecology , vol.20 , pp. 171-181
    • Blume, E.1    Bischoff, M.2    Reichert, J.M.3    Moorman, T.4    Konopka, A.5    Turco, R.F.6
  • 4
    • 0031947934 scopus 로고    scopus 로고
    • Impacts of carbon and flooding on soil microbial communities: phospholipid fatty acid profiles and substrate utilization patterns
    • Bossio D.A., and Scow K.M. Impacts of carbon and flooding on soil microbial communities: phospholipid fatty acid profiles and substrate utilization patterns. Microbial Ecology 35 (1998) 265-278
    • (1998) Microbial Ecology , vol.35 , pp. 265-278
    • Bossio, D.A.1    Scow, K.M.2
  • 5
    • 0031864898 scopus 로고    scopus 로고
    • Determinants of soil microbial communities: effects of agricultural management, season, and soil type on phospholipid fatty acid profiles
    • Bossio D.A., Scow K.M., Gunapala N., and Graham K.J. Determinants of soil microbial communities: effects of agricultural management, season, and soil type on phospholipid fatty acid profiles. Microbial Ecology 36 (1998) 1-12
    • (1998) Microbial Ecology , vol.36 , pp. 1-12
    • Bossio, D.A.1    Scow, K.M.2    Gunapala, N.3    Graham, K.J.4
  • 7
    • 0033826792 scopus 로고    scopus 로고
    • Microbial responses to simulated tillage and in cultivated and uncultivated soils
    • Calderón F.J., Jackson L.E., Scow K.M., and Rolston D.E. Microbial responses to simulated tillage and in cultivated and uncultivated soils. Soil Biology & Biochemistry 32 (2000) 1547-1559
    • (2000) Soil Biology & Biochemistry , vol.32 , pp. 1547-1559
    • Calderón, F.J.1    Jackson, L.E.2    Scow, K.M.3    Rolston, D.E.4
  • 8
    • 0029474334 scopus 로고
    • Fatty acid methyl ester (FAME) profiles as measures of soil microbial community structure
    • Cavigelli M.A., Robertson G.P., and Klug M.K. Fatty acid methyl ester (FAME) profiles as measures of soil microbial community structure. Plant and Soil 170 (1995) 99-113
    • (1995) Plant and Soil , vol.170 , pp. 99-113
    • Cavigelli, M.A.1    Robertson, G.P.2    Klug, M.K.3
  • 9
    • 0037290306 scopus 로고    scopus 로고
    • Effect of selected environmental and physico-chemical factors on bacterial cytoplasmic membranes
    • Denich T.J., Beaudette L.A., Lee H., and Trevors J.T. Effect of selected environmental and physico-chemical factors on bacterial cytoplasmic membranes. Journal of Microbiological Methods 52 (2003) 149-182
    • (2003) Journal of Microbiological Methods , vol.52 , pp. 149-182
    • Denich, T.J.1    Beaudette, L.A.2    Lee, H.3    Trevors, J.T.4
  • 11
    • 0036860653 scopus 로고    scopus 로고
    • Influence of soil sample sizes on the assessment of bacterial community structure
    • Ellingsøe P., and Johnsen K. Influence of soil sample sizes on the assessment of bacterial community structure. Soil Biology & Biochemistry 34 (2002) 1701-1707
    • (2002) Soil Biology & Biochemistry , vol.34 , pp. 1701-1707
    • Ellingsøe, P.1    Johnsen, K.2
  • 12
    • 0009029138 scopus 로고
    • Ecology and control of violet root rot caused by Helicobasidium mompa Tanaka in dwarf apple trees
    • (in Japanese with English summary)
    • Fujita K. Ecology and control of violet root rot caused by Helicobasidium mompa Tanaka in dwarf apple trees. Bulletin of Aomori Field Crops and Horticulture Experimental Station 7 (1992) 1-36 (in Japanese with English summary)
    • (1992) Bulletin of Aomori Field Crops and Horticulture Experimental Station , vol.7 , pp. 1-36
    • Fujita, K.1
  • 13
    • 0025919424 scopus 로고
    • Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization
    • Garland J.L., and Mills A.L. Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization. Applied and Environmental Microbiology 57 (1991) 2351-2359
    • (1991) Applied and Environmental Microbiology , vol.57 , pp. 2351-2359
    • Garland, J.L.1    Mills, A.L.2
  • 14
    • 0032033755 scopus 로고    scopus 로고
    • Selecting influence of plant species on microbial diversity in the rhizosphere
    • Grayston J., Wang S., Campbell C.D., and Edwards A.C. Selecting influence of plant species on microbial diversity in the rhizosphere. Soil Biology & Biochemistry 30 (1998) 369-378
    • (1998) Soil Biology & Biochemistry , vol.30 , pp. 369-378
    • Grayston, J.1    Wang, S.2    Campbell, C.D.3    Edwards, A.C.4
  • 16
    • 25844436935 scopus 로고    scopus 로고
    • Microbial response to heavy metal-polluted soils. Community analysis from phospholipid-linked fatty acids and ester-linked fatty acids extracts
    • Hinojosa M.B., Carreira J.A., García-Ruíz R., and Dick R.P. Microbial response to heavy metal-polluted soils. Community analysis from phospholipid-linked fatty acids and ester-linked fatty acids extracts. Journal of Environmental Quality 34 (2005) 1789-1800
    • (2005) Journal of Environmental Quality , vol.34 , pp. 1789-1800
    • Hinojosa, M.B.1    Carreira, J.A.2    García-Ruíz, R.3    Dick, R.P.4
  • 17
    • 0032444949 scopus 로고    scopus 로고
    • Fatty acid methyl ester (FAME) profiles as a tool to investigate community structure of two agricultural soils
    • Ibekwe A.M., and Kennedy A.C. Fatty acid methyl ester (FAME) profiles as a tool to investigate community structure of two agricultural soils. Plant and Soil 206 (1999) 151-161
    • (1999) Plant and Soil , vol.206 , pp. 151-161
    • Ibekwe, A.M.1    Kennedy, A.C.2
  • 20
    • 0032419655 scopus 로고    scopus 로고
    • Organic acids in the rhizosphere-a critical review
    • Jones D.L. Organic acids in the rhizosphere-a critical review. Plant and Soil 205 (1998) 25-44
    • (1998) Plant and Soil , vol.205 , pp. 25-44
    • Jones, D.L.1
  • 21
    • 0031452588 scopus 로고    scopus 로고
    • Field adjacent vegetation and the effects of agrochemical drift: botanical change caused by low levels of herbicide and fertilizer
    • Kleijn D., and Snoeijing G.I.J. Field adjacent vegetation and the effects of agrochemical drift: botanical change caused by low levels of herbicide and fertilizer. Journal of Applied Ecology 34 (1997) 1413-1425
    • (1997) Journal of Applied Ecology , vol.34 , pp. 1413-1425
    • Kleijn, D.1    Snoeijing, G.I.J.2
  • 23
    • 0141452099 scopus 로고    scopus 로고
    • Characterization of soil microbial communities under different potato cropping systems by microbial population dynamics, substrate utilization, and fatty acid profiles
    • Larkin R.P. Characterization of soil microbial communities under different potato cropping systems by microbial population dynamics, substrate utilization, and fatty acid profiles. Soil Biology & Biochemistry 35 (2003) 1451-1466
    • (2003) Soil Biology & Biochemistry , vol.35 , pp. 1451-1466
    • Larkin, R.P.1
  • 24
    • 0034851136 scopus 로고    scopus 로고
    • Soil and plant specific effects on bacterial community composition in the rhizosphere
    • Marschner P., Yang C.-H., Lieberei R., and Crowley D.E. Soil and plant specific effects on bacterial community composition in the rhizosphere. Soil Biology & Biochemistry 33 (2001) 1437-1445
    • (2001) Soil Biology & Biochemistry , vol.33 , pp. 1437-1445
    • Marschner, P.1    Yang, C.-H.2    Lieberei, R.3    Crowley, D.E.4
  • 25
    • 32144433333 scopus 로고    scopus 로고
    • Impacts of an agri-environment field margin prescription on the flora and fauna of arable farmland in different landscapes
    • Marshall E.J.P., West T.M., and Kleijn D. Impacts of an agri-environment field margin prescription on the flora and fauna of arable farmland in different landscapes. Agriculture, Ecosystems and Environment 113 (2006) 36-44
    • (2006) Agriculture, Ecosystems and Environment , vol.113 , pp. 36-44
    • Marshall, E.J.P.1    West, T.M.2    Kleijn, D.3
  • 26
    • 0033984114 scopus 로고    scopus 로고
    • Impact of wheat cultivation on microbial communities from replant soils and apple growth in greenhouse trials
    • Mazzola M., and Gu Y.-H. Impact of wheat cultivation on microbial communities from replant soils and apple growth in greenhouse trials. Phytopathology 90 (2000) 114-119
    • (2000) Phytopathology , vol.90 , pp. 114-119
    • Mazzola, M.1    Gu, Y.-H.2
  • 27
    • 0033818198 scopus 로고    scopus 로고
    • Variation of microbial rhizosphere communities in response to crop species, soil origin, and inoculation with Sinorhizobium meliloti L33
    • Miethling R., Wieland G., Backhaus H., and Tebbe C.C. Variation of microbial rhizosphere communities in response to crop species, soil origin, and inoculation with Sinorhizobium meliloti L33. Microbial Ecology 41 (2000) 43-56
    • (2000) Microbial Ecology , vol.41 , pp. 43-56
    • Miethling, R.1    Wieland, G.2    Backhaus, H.3    Tebbe, C.C.4
  • 28
    • 0035018373 scopus 로고    scopus 로고
    • Extraction and purification of DNA in rhizosphere soil samples for PCR-DGGE analysis of bacterial consortia
    • Niemi R.M., Heiskanen I., Wallenius K., and Lindstron K. Extraction and purification of DNA in rhizosphere soil samples for PCR-DGGE analysis of bacterial consortia. Journal of Microbiological Methods 45 (2001) 155-165
    • (2001) Journal of Microbiological Methods , vol.45 , pp. 155-165
    • Niemi, R.M.1    Heiskanen, I.2    Wallenius, K.3    Lindstron, K.4
  • 29
    • 77951996707 scopus 로고
    • Total phosphorus
    • Page A.L., Miller R.H., and Keeney D.R. (Eds), American Society of Agronomy, Inc., Madison, WI
    • Olsen S.R., and Sommers L.E. Total phosphorus. In: Page A.L., Miller R.H., and Keeney D.R. (Eds). Methods of Soil Analysis Part 2 (1982), American Society of Agronomy, Inc., Madison, WI 404-407
    • (1982) Methods of Soil Analysis Part 2 , pp. 404-407
    • Olsen, S.R.1    Sommers, L.E.2
  • 31
    • 0035487320 scopus 로고    scopus 로고
    • Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed
    • Smalla K., Wieland G., Buchner A., Zock A., Parzy J., Kaiser S., Roskot N., Heuer H., and Berg G. Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed. Applied and Environmental Microbiology 67 (2001) 4742-4751
    • (2001) Applied and Environmental Microbiology , vol.67 , pp. 4742-4751
    • Smalla, K.1    Wieland, G.2    Buchner, A.3    Zock, A.4    Parzy, J.5    Kaiser, S.6    Roskot, N.7    Heuer, H.8    Berg, G.9
  • 32
    • 0035344248 scopus 로고    scopus 로고
    • Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods
    • Smit E., Leeflang P., Gommans S., van den Broek J., van Mil S., and Wernars K. Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods. Applied and Environmental Microbiology 67 (2001) 2284-2291
    • (2001) Applied and Environmental Microbiology , vol.67 , pp. 2284-2291
    • Smit, E.1    Leeflang, P.2    Gommans, S.3    van den Broek, J.4    van Mil, S.5    Wernars, K.6
  • 34
    • 0008977950 scopus 로고
    • Studies on the violet root rot of sweet potatoes caused by Helicobasidium mompa Tanaka. I. The disease invasion under field conditions
    • Suzuki N., Kasai K., Araki. T., and Takenashi T. Studies on the violet root rot of sweet potatoes caused by Helicobasidium mompa Tanaka. I. The disease invasion under field conditions. Bulletin of the National Institute of Agricultural Sciences Series C-8 (1957) 1-28
    • (1957) Bulletin of the National Institute of Agricultural Sciences , vol.Series C-8 , pp. 1-28
    • Suzuki, N.1    Kasai, K.2    Araki., T.3    Takenashi, T.4
  • 35
    • 0025366456 scopus 로고
    • 16s rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward D.M., Weller R., and Bateson M.M. 16s rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345 (1990) 63-65
    • (1990) Nature , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 37
    • 0034975660 scopus 로고    scopus 로고
    • Assessing soil biological characteristics: a comparison of bulk soil community DNA-, PLFA-, and Biolog-analyses
    • Widmer F., Fließbach A., Laczkó E., Schulze-Aurich J., and Zeyer J. Assessing soil biological characteristics: a comparison of bulk soil community DNA-, PLFA-, and Biolog-analyses. Soil Biology & Biochemistry 33 (2001) 1029-1036
    • (2001) Soil Biology & Biochemistry , vol.33 , pp. 1029-1036
    • Widmer, F.1    Fließbach, A.2    Laczkó, E.3    Schulze-Aurich, J.4    Zeyer, J.5
  • 38
    • 0036023978 scopus 로고    scopus 로고
    • Effects of agronomical measures on the microbial diversity of soils as related to the suppression of soil-borne plant pathogens
    • van Elsas J.D., Garbeva1 P., and Salles1 J. Effects of agronomical measures on the microbial diversity of soils as related to the suppression of soil-borne plant pathogens. Biodegradation 13 (2002) 29-40
    • (2002) Biodegradation , vol.13 , pp. 29-40
    • van Elsas, J.D.1    Garbeva1, P.2    Salles1, J.3
  • 39
    • 0035075371 scopus 로고    scopus 로고
    • 16S rDNA fingerprinting of rhizosphere bacterial communities associated with healthy and Phytophthora infected avocado roots
    • Yang C.-H., Crowley D.E., and Menge J.A. 16S rDNA fingerprinting of rhizosphere bacterial communities associated with healthy and Phytophthora infected avocado roots. FEMS Microbiology Ecology 35 (2001) 129-136
    • (2001) FEMS Microbiology Ecology , vol.35 , pp. 129-136
    • Yang, C.-H.1    Crowley, D.E.2    Menge, J.A.3
  • 40
    • 0029666843 scopus 로고    scopus 로고
    • Litter as a regulator of N and C dynamics in macrophytic patches in Negev desert soils
    • Zaady E., Groffman P.M., and Shachak M. Litter as a regulator of N and C dynamics in macrophytic patches in Negev desert soils. Soil Biology & Biochemistry 28 (1996) 39-46
    • (1996) Soil Biology & Biochemistry , vol.28 , pp. 39-46
    • Zaady, E.1    Groffman, P.M.2    Shachak, M.3
  • 42
    • 0001682047 scopus 로고
    • Determination of phospholipid- and lipopolysaccharide-derived fatty acids as an estimate of microbial biomass and community structures in soils
    • Zelles L., Bai Q.Y., Rackwitz R., Chadwick D., and Beese F. Determination of phospholipid- and lipopolysaccharide-derived fatty acids as an estimate of microbial biomass and community structures in soils. Biology and Fertility of Soils 19 (1995) 115-123
    • (1995) Biology and Fertility of Soils , vol.19 , pp. 115-123
    • Zelles, L.1    Bai, Q.Y.2    Rackwitz, R.3    Chadwick, D.4    Beese, F.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.