Development of a multiplex real-time polymerase chain reaction for the detection of influenza virus type A including H5 and H9 subtypes

Diagnostic Microbiology and Infectious Disease

Volumn 61, Issue 2, 2008, Pages 192-197

  Li, Pei qiong ^a   Zhang, Jun ^a   Muller, Claude P ^b   Chen, Jing xian ^c   Yang, Zi feng ^c   Zhang, Ren ^d   Li, Juan ^a   He, Yun shao ^a  

^a SUN YAT SEN UNIVERSITY   (China)

^b National Public Health Laboratory   (Luxembourg)

^c GUANGZHOU MEDICAL UNIVERSITY   (China)

^d GUANGZHOU UNIVERSITY OF CHINESE MEDICINE   (China)

Author keywords

Avian influenza virus; Diagnose method; Multiplex real time polymerase chain reaction

Indexed keywords

VIRUS RNA;

ARTICLE; CHEMICAL LABELING; FLUORESCENCE ANALYSIS; INFLUENZA VIRUS A; INFLUENZA VIRUS A H5; INFLUENZA VIRUS A H9; MOLECULAR PROBE; MULTIPLEX POLYMERASE CHAIN REACTION; NONHUMAN; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA ANALYSIS; SENSITIVITY AND SPECIFICITY; VIRUS DETECTION; VIRUS GENE;

ANIMALS; BIRDS; DNA PRIMERS; FLUORESCENCE; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; INFLUENZA A VIRUS; INFLUENZA IN BIRDS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; VIRAL MATRIX PROTEINS;

EID: 43549101692     PISSN: 07328893     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.diagmicrobio.2008.01.007     Document Type: Article

References (26)

1. Boivin G., Hardy I., and Kress A. Evaluation of a rapid optical immunoassay for influenza viruses (FLU OIA test) in comparison with cell culture and reverse transcription-PCR. J. Clin. Microbiol. 39 (2001) 730-732
2. Choi Y.K., Goyal S.M., Kang S.W., Farnham M.W., and Joo H.S. Detection and subtyping of swine influenza H1N1, H1N2 and H3N2 viruses in clinical samples using two multiplex RT-PCR assays. J. Virol. Methods 102 (2002) 53-59
3. Daum L.T., Canas L.C., Schadler C.A., Ujimori V.A., Huff W.B., Barnes W.J., and Lohman K.L. A rapid, single-step multiplex reverse transcription-PCR assay for the detection of human H1N1, H3N2, and B influenza viruses. J. Clin. Virol. 25 (2002) 345-350
4. Di Trani L., Bedini B., Donatelli I., Campitelli L., Chiappini B., De Marco M.A., Delogu M., Buonavoglia C., and Vaccari G. A sensitive one-step real-time PCR for detection of avian influenza viruses using a MGB probe and an internal positive control. BMC Infect. Dis. 6 (2006) 87
5. Fouchier R.A., Munster V., Wallensten A., Bestebroer T.M., Herfst S., Smith D., Rimmelzwaan G.F., Olsen B., and Osterhaus A.D. Characterization of a novel influenza A virus hemagglutinin subtype (H16) obtained from black-headed gulls. J. Virol. 79 (2005) 2814-2822
6. Herrmann B., Larsson C., and Zweygberg B.W. Simultaneous detection and typing of influenza viruses A and B by a nested reverse transcription-PCR: comparison to virus isolation and antigen detection by immunofluorescence and optical immunoassay (FLU OIA). J. Clin. Microbiol. 39 (2001) 134-138
7. Johnston S.L., and Bloy H. Evaluation of a rapid enzyme immunoassay for detection of influenza A virus. J. Clin. Microbiol. 31 (1993) 142-143
8. Kaiser L., Briones M.S., and Hayden F.G. Performance of virus isolation and Directigen Flu A to detect influenza A virus in experimental human infection. J. Clin. Virol. 14 (1999) 191-197
9. Lee C.W., and Suarez D.L. Application of real-time RT-PCR for the quantitation and competitive replication study of H5 and H7 subtype avian influenza virus. J. Virol. Methods 119 (2004) 151-158
10. Lee M.S., Chang P.C., Shien J.H., Cheng M.C., and Shieh H.K. Identification and subtyping of avian influenza viruses by reverse transcription-PCR. J. Virol. Methods 97 (2001) 13-22
11. Leonardi G.P., Leib H., Birkhead G.S., Smith C., Costello P., and Conron W. Comparison of rapid detection methods for influenza A virus and their value in health-care management of institutionalized geriatric patients. J. Clin. Microbiol. 32 (1994) 70-74
12. Munch M., Nielsen L.P., Handberg K.J., and Jorgensen P.H. Detection and subtyping (H5 and H7) of avian type A influenza virus by reverse transcription-PCR and PCR-ELISA. Arch. Virol. 146 (2001) 87-97
13. Ng L.F., Barr I., Nguyen T., Noor S.M., Tan R.S., Agathe L.V., Gupta S., Khalil H., To T.L., Hassan S.S., and Ren E.C. Specific detection of H5N1 avian influenza A virus in field specimens by a one-step RT-PCR assay. BMC Infect. Dis. 6 (2006) 40
14. Payungporn S., Phakdeewirot P., Chutinimitkul S., Theamboonlers A., Keawcharoen J., Oraveerakul K., Amonsin A., and Poovorawan Y. Single-step multiplex reverse transcription-polymerase chain reaction (RT-PCR) for influenza A virus subtype H5N1 detection. Viral Immunol. 17 (2004) 588-593
15. Payungporn S., Chutinimitkul S., Chaisingh A., Damrongwantanapokin S., Buranathai C., Amonsin A., Theamboonlers A., and Poovorawan Y. Single step multiplex real-time RT-PCR for H5N1 influenza A virus detection. J. Virol. Methods 131 (2006) 143-147
16. Perdue M.L., and Swayne D.E. Public health risk from avian influenza viruses. Avian Dis. 49 (2005) 317-327
17. Poddar S.K. Influenza virus types and subtypes detection by single step single tube multiplex reverse transcription-polymerase chain reaction (RT-PCR) and agarose gel electrophoresis. J. Virol. Methods 99 (2002) 63-70
18. Poddar S.K., Espina R., and Schnurr D.P. Evaluation of a single-step multiplex RT-PCR for influenza virus type and subtype detection in respiratory samples. J. Clin. Lab. Anal. 16 (2002) 163-166
19. Rohm C., Zhou N., Suss J., Mackenzie J., and Webster R.G. Characterization of a novel influenza hemagglutinin, H15: criteria for determination of influenza A subtypes. Virology 217 (1996) 508-516
20. Schweiger B., Zadow I., Heckler R., Timm H., and Pauli G. Application of a fluorogenic PCR assay for typing and subtyping of influenza viruses in respiratory samples. J. Clin. Microbiol. 38 (2000) 1552-1558
21. Spackman E., Senne D.A., Myers T.J., Bulaga L.L., Garber L.P., Perdue M.L., Lohman K., Daum L.T., and Suarez D.L. Development of a real-time reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes. J. Clin. Microbiol. 40 (2002) 3256-3260
22. Starick E., Römer-Oberdörfer A., and Werner O. Type- and subtype-specific RT-PCR assays for avian influenza A viruses (AIV). J. Vet. Med. B. Infect. Dis. Vet. Public Health 47 (2000) 295-301
23. Stockton J., Ellis J.S., Saville M., Clewley J.P., and Zambon M.C. Multiplex PCR for typing and subtyping influenza and respiratory syncytial viruses. J. Clin. Microbiol. 36 (1998) 2990-2995
24. Stone B., Burrows J., Schepetiuk S., Higgins G., Hampson A., Shaw R., and Kok T. Rapid detection and simultaneous subtype differentiation of influenza A viruses by real time PCR. J. Virol. Methods 117 (2004) 103-112
25. Trampuz A., Prabhu R.M., Smith T.F., and Baddour L.M. Avian influenza: a new pandemic threat?. Mayo. Clin. Proc. 79 (2004) 523-530 [quiz 530]
26. Webster R.G., Bean W.J., Gorman O.T., Chambers T.M., and Kawaoka Y. Evolution and ecology of influenza A viruses. Microbiol. Rev. 56 (1992) 152-179