Phylogenetic relationships in Abies (Pinaceae): Evidence from PCR-RFLP of the nuclear ribosomal DNA internal transcribed spacer region

Botanical Journal of the Linnean Society

Volumn 145, Issue 4, 2004, Pages 425-435

  Xiang, Qiao Ping ^a   Xiang, Qiu Yun ^b   Liston, Aaron ^c   Zhang, Xian Chun ^a  

^a INSTITUTE OF BOTANY   (China)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

^c OREGON STATE UNIVERSITY   (United States)

Author keywords

Infrageneric classification; Molecular phylogeny; nr DNA ITS

Indexed keywords

CLASSIFICATION; GENETIC ANALYSIS; PHYLOGENETICS; TAXONOMY;

ABIES; PINACEAE;

EID: 4344700254     PISSN: 00244074     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1095-8339.2004.00286.x     Document Type: Article

References (43)

1. Axelrod DI. 1976. Evolution of the Santa Lucia Fir (Abies bracteata) ecosystem. Annals of the Missouri Botanical Garden 63: 24-41.
2. Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Campbell CS, Donoghue MJ. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Annals of the Missouri Botanical Garden 82: 247-277.
3. Bobola MS, Smith DE, Klein AS. 1992. Five major nuclear ribosomal repeats represent a large and variable fraction of the genomic DNA of Picea rubens and P. mariana. Molecular Biology and Evolution 9: 125-137.
4. Cullings KW. 1992. Design and testing of a plant-specific PCR primer for ecological and evolutionary studies. Molecular Ecology 1: 233-240.
5. Engelmann G. 1878. A synopsis of the American firs (Abies Link). Transaction of the St. Louis Academic Sciences 3: 593-602.
6. Farjon A. 1990. Pinaceae: drawings and descriptions of the genera Abies, Cedrus, Pseudolarix, Keteleeria, Nothotsuga, Tsuga, Cathaya, Pseudotsuga, Larix and Picea (Regnum Vegetabile 121). Königstein: Koeltz Scientific Books, 9-109.
7. Farjon A. 2001. World checklist and bibliography of conifers, 2nd edn. London: The Royal Botanic Gardens, Kew, 109-134.
8. Farjon A, Rushforth KD. 1989. A classification of Abies Miller (Pinaceae). Notes of the Royal Botanic Garden Edinburgh 46: 59-79.
9. Franco JDA. 1950. Abetos. Lisboa: 1-252.
10. Gernandt DS, Liston A. 1999. Internal transcribed spacer region evolution in Larix and Pseudotsuga (Pinaceae). American Journal of Botany 86: 711-723.
11. Gordon G. 1858. The Pinetum, 2nd edn. London: Henry G. Bohn.
12. Grant V. 2003. Incongruence between cladistic and taxonomic systems. American Journal of Botany 90: 1263-1270.
13. Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/ NT. Nucleotide Acids Symposium Series 41: 95-98.
14. Hart JA. 1987. A cladistic analysis of conifers: preliminary results. Journal of the Arnold Arboretum 68: 269-307.
15. Hickel R. 1906-08. Notes pour servir à la dètermination pratique des Abietinées. Bulletin da la Société Dendrologique de France 2: 45-58, f., 1-7; 3: 5-18, f., 8-30; 4: 41-48, f., 31-46; 5: 82-86; 7: 5-10, f. A-1, 9: 179-185; 10: 201-208.
16. Hickel R. 1906-08. Notes pour servir à la dètermination pratique des Abietinées. Bulletin da la Société Dendrologique de France 2: 45-58, f., 1-7; 3: 5-18, f., 8-30; 4: 41-48, f., 31-46; 5: 82-86; 7: 5-10, f. A-1, 9: 179-185; 10: 201-208.
17. Hickel R. 1906-08. Notes pour servir à la dètermination pratique des Abietinées. Bulletin da la Société Dendrologique de France 2: 45-58, f., 1-7; 3: 5-18, f., 8-30; 4: 41-48, f., 31-46; 5: 82-86; 7: 5-10, f. A-1, 9: 179-185; 10: 201-208.
18. Hickel R. 1906-08. Notes pour servir à la dètermination pratique des Abietinées. Bulletin da la Société Dendrologique de France 2: 45-58, f., 1-7; 3: 5-18, f., 8-30; 4: 41-48, f., 31-46; 5: 82-86; 7: 5-10, f. A-1, 9: 179-185; 10: 201-208.
19. Hickel R. 1906-08. Notes pour servir à la dètermination pratique des Abietinées. Bulletin da la Société Dendrologique de France 2: 45-58, f., 1-7; 3: 5-18, f., 8-30; 4: 41-48, f., 31-46; 5: 82-86; 7: 5-10, f. A-1, 9: 179-185; 10: 201-208.
20. Hickel R. 1906-08. Notes pour servir à la dètermination pratique des Abietinées. Bulletin da la Société Dendrologique de France 2: 45-58, f., 1-7; 3: 5-18, f., 8-30; 4: 41-48, f., 31-46; 5: 82-86; 7: 5-10, f. A-1, 9: 179-185; 10: 201-208.
21. Hickel R. 1906-08. Notes pour servir à la dètermination pratique des Abietinées. Bulletin da la Société Dendrologique de France 2: 45-58, f., 1-7; 3: 5-18, f., 8-30; 4: 41-48, f., 31-46; 5: 82-86; 7: 5-10, f. A-1, 9: 179-185; 10: 201-208.
22. Kent AH. 1900. Veitch's manual of the Coniferae, 2nd edn. London: James Veitch & Sons Ltd, 486-545.
23. Kormutak A, Yang JC. 1998. The genetics and embryology of Taiwan Fir (Abies kawakamii) (Hayata) (Ito). Taiwan Journal of Forest Science 13: 1-71.
24. Landry P. 1984. Synopsis du genre Abies. Bulletin de la Société Dendrologique de France 131, Lettres Bot. 3: 223-229.
25. Liston A, Robinson WA, Oliphant JM, Alvarez-Buylla ER. 1996. Length variation in the nuclear ribosomal DNA internal transcribed spacer region of non-flowering seed plants. Systematic Botany 21: 109-120.
26. Liu TS. 1971. A monograph of the genus Abies. Taipei: The Department of Forestry College of Agriculture, National Taiwan University, 1-608.
27. Maggini F, Marrocco R, Gelati MT, Dominicis RID. 1998. Lengths and nucleotides sequences of the internal spacers of nuclear ribosomal DNA in gymnosperms and pteridophytes. Plant Systematics and Evolution 213: 199-205.
28. Marrocco R, Gelati MT, Maggini F. 1996. Nucleotide sequence of the internal transcribed spacers and 5.8s region of ribosomal DNA in Pinus pinea L. DNA Sequence 6: 175-177.
29. Matzenko AE. 1968. Conspectus generis Abies Mill. Novosti Sistematiki Vysshikh Rastenii 5: 9-12.
30. Mayr H. 1890. Monographie der Abietineen des Japanischen Reiches. Munchen: Gustav Himmer.
31. Messinger W, Hummer K, Liston A. 1999. Ribes (Grossulariaceae) phylogeny as indicated by restriction-site polymorphisms of PCR-amplified chloroplast DNA. Plant Systematics and Evolution 217: 185-195.
32. Nickrent DL, Schuette KP, Starr EM. 1994. A molecular phylogeny of Arceuthobium (Viscaceae) based on nuclear ribosomal DNA internal transcribed spacer sequences. American Journal of Botany 81: 1149-1160.
33. Parducci L, Szmidt AE. 1999. PCR-RFLP analysis of cpDNA in the genus Abies. Theoretical and Applied Genetics 98: 802-808.
34. Patschke W. 1913. Über die extratropischen ostasiatischen Konifen und ihre Bedeutung für die pflanzengeographische Gliederung Ostasiens. Botanische Jahrbücher für Systematik, Pflanzengeschichte und Pflanzengeographie 48: 626-776.
35. Spach E. 1842. Histoire Naturelle Des Végétaux - Phanérogames, Vol. 11. Paris: Librairie Encyclopédique de Roret.
36. Suyama Y, Yoshimaru H, Tsumura Y. 2000. Molecular phylogenetic position of Japanese Abies (Pinaceae) based on Chloroplast DNA sequences. Molecular Phylogenetics and Evolution 16 (2): 271-277.
37. Swofford DL. 2000. PAUP*: phylogenetic analysis using parsimony (*and other methods), Version 4. Sunderland, MA: Sinauer.
38. Tsumura Y, Suyama Y. 1998. Differentiation of mitochondrial DNA polymorphisms in populations of five Japanese Abies species. Evolution 52: 1031-1042.
39. Wang X-Q, Tank DC, Sang T. 2000. Phylogeny and divergence times in Pinaceae: evidence from three genomes. Molecular Biology and Evolution 17: 773-381.
40. Wendel JF, Albert VA. 1992. Phylogenetics of the cotton genus (Gossypium): character-state weighted parsimony analysis of chloroplast-DNA restriction site data and its systematic and biogeographic implications. Systematic Botany 17: 115-143.
41. Xiang Q-Y, Crawford DJ, Wolfe AD, Tang Y-C, Depamphilis CW. 1998. Origin and biogeography of Aesculus L. (Hippocastanaceae): a molecular phylogenetic perspective. Evolution 52: 988-997.
42. Xiang Q-P, Fu L-K. 1998. SEM observation on the structure of cuticles on leaf inner surface on Abies (Pinaceae) and its significance in systematics. Acta Phytotaxonomica Sinica 36: 441-448.
43. Xiang Q-P, Xiang Q-Y, Liston A, Fu L-K, Fu D-Z. 2000. Length variation of the nuclear ribosomal DNA internal transcribed spacer in the genus Abies, with reference to its systematic utility in Pinaceae. Acta Botanica Sinica 42:946-951.