Recent advances in gut microbiology and their possible contribution to animal health and production - A review

Asian-Australasian Journal of Animal Sciences

Volumn 17, Issue 6, 2004, Pages 877-884

  Kobayashi, Yasuo ^a   Koike, Satoshi ^a   Taguchi, Hidenori ^a,b   Itabashi, Hisao ^a,c   Kam, Dong K ^a,d   Ha, Jong K ^a,d  

^a HOKKAIDO UNIVERSITY   (Japan)

^b MIE UNIVERSITY   (Japan)

^c TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

^d Seoul National University   (South Korea)

Author keywords

Animal Production; Ecology; Gut Microbes; Molecular Analysis; Recombinant

Indexed keywords

ANIMALIA; BACTERIA (MICROORGANISMS); BUTYRIVIBRIO; BUTYRIVIBRIO FIBRISOLVENS; FIBROBACTER; OVIS ARIES; RUMINOCOCCUS;

EID: 4344684794     PISSN: 10112367     EISSN: None     Source Type: Journal    
DOI: 10.5713/ajas.2004.877     Document Type: Review

References (51)

1. Allison, M. J., A. C. Hammond and R. J. Jones. 1990. Detection of ruminal bacteria that degrade toxic dehydroxypyridine compounds produced from mimosine. Appl. Environ. Microbiol. 56:590-594.
2. Attwood, G T., R. A. Lockington, G. P. Xue and J. D. Brooker. 1988. Use of a unique gene sequence as a probe to enumerate a strain of Bacteroides ruminicola introduced into the rumen. Appl. Environ. Microbiol. 54:534-539.
3. Cappa, F., B. Riboli, F. Rossi, M. L. Callegari and P. S. Cocconelli. 1997. Construction of novel Ruminococcus albus strains with improved cellulase activity by cloning of Streptomyces rochei endoglucanase gene. Biotechnol. Lett. 19:1151-1155.
4. Daly, K., C. S. Stewart, H. J. Flint and S. P. Shirazi-Beechey. 2001. Bacterial diversity within the equine large intestine as revealed by molecular analysis of cloned 16S rRNA genes. FEMS Microbiol. Ecol. 38:141-151.
5. Daniel, A. S., J. Martin, I. Vanat, T. R. Whitehead and H. J. Flint. 1995. Expression of a cloned cellulase/xylanase gene from Prevotella ruminicola in Bacteroides vulgatus, Bacteroides uniformis and Prevotella ruminicola. J. Appl. Bacteriol. 79:417-424.
6. Devillard, E., C. J. Newbold, K. P. Scott, E. Forano, R. J. Wallace, J. P. Jouany and H. J. Flint. 1999. A xylanase produced by the rumen anaerobic protozoan Polyplastron multivesiculatum shows close sequence family to family 11 xylanases from gram-positive bacteria. FEMS Microbiol. Lett. 191:145-152.
7. Forano, E. and H. J. Flint. 2000. Genetically modified organisms: consequences for ruminant health and nutrition. Ann. Zootech. 49:255-271.
8. Forsberg, C. W., K. J. Cheng and B. A. White. 1997. Polysaccharide degradation in the rumen and large intestine. In: Gastrointestinal Microbiology Vol. 1. (Ed R. I. Mackie and B. A. White). pp. 319-379. International Thomson Publishing, New York.
9. Gregg, K., C. L. Cooper, D. J. Schaefer, H. Sharpe, C. E. Beard, G. Allen and J. Xu. 1994. Detoxification of the plant toxin fluoroacetate by a genetically modified rumen bacterium. Bio/Technol. 12:1361-1365.
10. Gregg, K., G. Allen and C. E. Beard. 1996. Genetic manipulation of rumen bacteria: from potential to reality. Aust. J. Agric. Res. 47:247-256.
11. Gregg, K., B. Hamdolf, K. Henderson, J. Kopecny and C. Wong. 1998. Genetically modified ruminal bacteria protect sheep from fluoroacetate poisoning. Appl. Environ. Microbiol. 64:3496-3498.
12. Ha, J. K., D. K. Kam and H. S. Jeon. 2000. Role of xylan degrading enzymes in fiber digestion in ruminants. Asian-Aust. J. Anim. Sci. 13:149-157.
13. Jun Hyun, S., J. K. Ha, L. M. Malburg, A. M. V. Gibbins and C. W. Forsberg. 2003. Characteristics of a cluster of xylanases in F. succinogenes S85. Can. J. Microbiol. 49:171-180.
14. Kam, D. K. 2000. Cloning of xylanase gene from Piromyces communis and vector construction for transformation to anaerobic bacteria. Seoul Natl. Univ. MS thesis.
15. Karita, S., K. Sakka and K. Ohmiya. 1997. Cellulosomes, cellulase complexes, of anaerobic microbes: their structure models and functions. In: Rumen Microbes and Digestive Physiology in Ruminants (Ed. H. Itabashi, R. Onodera, Y. Sasaki, K. Ushida and H. Yano). pp. 47-57, Japan Sci. Soc. Press, Tokyo/S. Kargel, Basel.
16. Kim, M. S. 2004. cPCR assay for the measurement of ruminal bacteria count and microbial attachment. Seoul Natl. Univ. MS thesis.
17. Kobayashi, Y., M. Wakita, R. Sakauchi and S. Hoshino. 1990. Effects of ionophores on rumen microbes and host animal nutrition. In: The Rumen Ecosystem-The Microbial Metabolism and Its Regulation (Ed. S. Hoshino, R. Onodera, H. Minato and H. Itabashi). pp. 179-186, Japan Sci. Soc. Press/Springer-Verlag, Tokyo/Berlin.
18. Kobayashi, Y., N. Okuda, M. Matsumoto, K. Inoue, M. Wakita and S. Hoshino. 1998. Constitutive expression of a heterologous Eubacterium ruminantium xylanase gene (xynA) in Butyrivibrio fibrisolvens. FEMS Microbiol. Lett. 163:11-17.
19. Kobayashi, Y. and R. Onodera. 1999. Application of molecular biology to rumen microbes - Review-. Asian-Aust. J. Anim. Sci. 12:77-83.
20. Kobayashi, Y., R. J. Forster and R. M. Teather. 2000. Development of a competitive polymerase chain reaction assay for the ruminal bacterium Butyrivibrio fibrisolvens OB156 and its use for tracking an OB156-derived recombinant. FEMS Microbiol. Lett. 188:185-190.
21. Kobayashi, Y., M. Yamada and M. Yamamoto. 2001. Survival of a recombinant rumen bacterium in the rumen of sheep. Anim. Sci. J., 72:344-346.
22. Kobayashi, Y. and M. Yamamoto. 2002. Factors that limit maintenance of recombinant rumen bacterium in sheep rumen. Anim. Sci. J. 73:131-136.
23. Kobayashi, Y., H. Taguchi, T. N. Goto, S. Koike and K. Ohmiya. 2003. Expression and export of a Ruminococcus albus cellulase in Butyrivibrio fibrisolvens through the use of an alternative gene promoter and signal sequence. Can. J. Microbiol. 49:375-382.
24. Kobayashi, Y. 2003. Recombinant rumen bacteria: problems and opportunities. Nutr. Abst. Rev. (Series B), 73:51-59.
25. Koike, S., Y. Shingu, H. Inaba, M. Kawai, Y Kobayashi, H. Hata, K. Tanaka and M. Okubo. 2000. Fecal bacteria of Hokkaido native horses as characterized by microscopic enumeration and competitive PCR assays. J. Equine Sci. 11:45-50.
26. Koike, S. and Y. Kobayashi. 2001. Development and use of competitive PCR assays for the ruminal cellulolytic bacteria: Fibrobacter succinogenes, Ruminococcus albus and Ruminococcus flavefaciens. FEMS Microbiology Letters, 204:361-366, 2001
27. Koike, S., J. Pan, Y Kobayashi and K. Tanaka. 2003a. Kinetics of in sacco fiber-attachment of representative ruminal cellulolytic bacteria monitored by competitive PCR. J. Dairy Sci. 86:1429-1435.
28. Koike, S., S. Yoshitani, Y. Kobayashi, K. Tanaka. 2003b. Phylogenetic analysis of fiber-associated rumen bacterial community and PCR detection of uncultured bacteria. FEMS Microbiol. Lett. 229:23-30.
29. Krause, D. O., R. J. Bunch, N. D. Dalrymple, K. S. Gobius, W. J. Smith, X. P. Xue and C. S. McSweeney. 2001. Expression of a modified Neocallimastix patriciarum xylanase in Butyrivibrio fibrisolvens digests more fibre but can not effectively compete with highly fibrolytic bacteria in the rumen. J. Appl. Microbiol. 90:388-396.
30. Lin, C. and D. A. Stahl. 1995. Taxon-specific probes for the cellulolytic genus Fibrobacter reveal abundant and novel equine-associated populations. Appl. Environ. Microbiol. 61:1348-1351.
31. McSweeney, C. S., B. P. Dalrymple, K. S. Gobius, P. M. Kennedy, D. O. Krause, R. I. Mackie and G. P. Xue. 1999. The application of rumen biotechnology to improve the nutritive value of fibrous feedstuffs: pre- and post-ingestion. Livestock Prod. Sci. 59:265-283.
32. McSweeney, C. S., B. Parmer, D. M. McNeil and D. O. Krause. 2001. Microbial interactions with tannins: nutritional consequences for ruminants. Anim. Feed Sci. Technol. 91:83-93.
33. Minato, H., E. Miyagawa and T. Suto. 1990. Techniques for analysis of rumen microbial ecosystems. In: The Rumen Microbial Ecosystem- The Microbial Metabolism and Its Regulation (Ed. S. Hoshino, R. Onodera, H. Minato and H. Itabashi). pp. 3-12. Japan Sci. Soc. Press/Springer-Verlag, Tokyo/Berlin.
34. 14. J. Bacteriol. 185:2219-2226.
35. Osawa, R. 1990. Formation of a clear zone on tannin-treated brain heart infusion agar by a Streptococcus sp. isolated from feces of koalas. Appl. Environ. Microbiol. 56:829-831.
36. Reilly, K. and G T. Attwood. 1998. Detection of Clostridium proteoclasticum and closely related strains in the rumen by competitive PCR. Appl. Environ. Microbiol. 64:907-913.
37. Rasmussen, M. A., B. A. White and R. B. Hespell. 1989. Improved assay for quantitating adherence of ruminal bacteria to cellulose. Appl. Environ. Microbiol. 55:2089-2091.
38. Santra, A. and S. A. Karim. 2003. Rumen manipulation to improve animal productivity. Asian-Aust. J. Anim. Sci. 16:748-763.
39. Singh, B., T. J. Bhat and B. Singh. 2001. Exploiting gastrointestinal microbes for livestock and industrial development -Review-. Asian-Aust. J. Anim. Sci. 14:567-586.
40. Tajima, K., R. I. Aminov, T. Nagamine, K. Ogata, M. Nakamura, H. Matsui and Y. Benno. 1999. Rumen bacterial diversity as determined by sequence analysis of 16S rDNA libraries. FEMS Micribiol. Ecol. 29:159-169.
41. Tajima, K., S. Arai, K. Ogata, T. Nagamine, H. Matsui, M. Nakamura, R. I. Aminov and Y. Benno. 2000. Rumen bacterial community transition during adaptation to high-grain diet. Anaerobe, 6:273-284.
42. Tajima, K., R. I. Aminov, T. Nagamine, H. Matsui, M. Nakamura and Y. Benno. 2001. Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR. Appl. Environ. Microbiol. 67:2766-2774.
43. Takenaka, A., C. G. D Silva, H. Kudo, H. Itabashi and K. J. Cheng. 1999. Molecular cloning, expression and characterization of an endo-β1,4- glucanase cDNA from Epidinium caudatum. J. Gen. Appl. Microbiol. 45:57-61.
44. Teather, R. M., M. A. Hefford and R. J. Forster. 1997. Genetics of Rumen bacteria. In: The Rumen Microbial Ecosystem (2nd ed.) (Ed. P. N. Hobson and C. S. Stewart). pp. 427-466. Blackie Academic & Professional, London, UK.
45. Teather, R. M. and R. J. Forster. 1998. Manipulating the rumen microflora with bacteriocins to improve ruminant production. Can. J. Anim. Sci. 78:57-69.
46. Varel, V. H., J. T. Yen and K. K. Kreikmeiser. 1995. Addition of cellulolytic clostridia to the bovine rumen and pig intestinal tract. Appl. Environ. Mivrobiol. 61:1116-1119.
47. Wallace, R. J. 1992. Rumen microbiology, biotechnology and ruminant nutrition: the application of research findings to a complex microbial ecosystem. FEMS Microbiol. Lett. 100:529-534.
48. Weimer, P. J., G. C. Waghorn, C. L. Odt and D. R. Mertens. 1999. Effect of diet on populations of three species of ruminal cellulolytic bacteria in lactating dairy cows. J. Dairy Sci. 82:122-134.
49. White, B. A. and M. Morrison. 2001. Genomic and proteomic analysis of microbial function in the gastrointestinal tract of ruminants -Review-. Asian-Aust. J. Anim. Sci. 14:880-884.
50. Whitford, M. F., R. J. Forster, C. E. Beard, J. Gong and R. M. Teather. 1998. Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes. Anaerobe, 4:153-163.
51. Whitehead, T. R. and H. J. Flint. 1995. Heterologous expression of an endoglucanase gene (endA) from the ruminal anaerobe Ruminococcus flavefaciens 17 in Streptococcus bovis and Streptococcus sanguis.