Phylogeographical insights into the origins of the Squalius alburnoides complex via multiple hybridization events

Molecular Ecology

Volumn 13, Issue 9, 2004, Pages 2807-2817

  Cunha, C ^a,b,c   Coelho, M M ^b   Carmona, J A ^a   Doadrio, I ^a  

^a MUSEO NACIONAL DE CIENCIAS NATURALES   (Spain)

^b UNIVERSITY OF LISBON   (Portugal)

^c UNIVERSITY OF LISBON   (Portugal)

Author keywords

Asexual; Bayesian inference; Hybridization events; Maternal ancestor; Polyphyletic origin

Indexed keywords

FRESH WATER; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; CLUSTER ANALYSIS; COMPARATIVE STUDY; CYPRINIFORMES; DNA SEQUENCE; GENETICS; GEOGRAPHY; HYBRIDIZATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PORTUGAL; SPAIN; SPECIES DIFFERENCE; STATISTICAL MODEL;

ANIMALS; BASE SEQUENCE; BAYES THEOREM; CLUSTER ANALYSIS; CYPRINIDAE; DNA, MITOCHONDRIAL; FRESH WATER; GEOGRAPHY; HYBRIDIZATION, GENETIC; LIKELIHOOD FUNCTIONS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; PORTUGAL; SEQUENCE ANALYSIS, DNA; SPAIN; SPECIES SPECIFICITY;

ALBURNOIDES; ANIMALIA; CYPRINIFORMES; RUTILUS ALBURNOIDES; SQUALIUS; VERTEBRATA;

EID: 4344639340     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2004.02283.x     Document Type: Article

References (49)

1. Alves MJ, Coelho MM, Collares-Pereira MJ (1997a) The Rutilus alburnoides complex (cyprinidae): evidence for hybrid origin. Journal of Zoological Systematics and Evolutionary Research, 35, 1-10.
2. Alves MJ, Coelho MM, Collares-Pereira MJ (1998) Diversity in the reproductive modes of females of the Rutilus alburnoides complex (Teleostei, Cyprinidae): a way to avoid the genetic constraints of uniparentalism. Molecular Biology and Evolution, 15, 1233-1242.
3. Alves MJ, Coelho MM, Collares-Pereira MJ (2001) Evolution in action through hybridization and polyploidy in an Iberian fresh water fish: a genetic review. Genetica, 111, 375-385.
4. Alves MJ, Coelho MM, Collares-Pereira MM, Dowling TE (1997b) Maternal ancestry of the Rutilus alburnoides complex (Teleostei, Cyprinidae) as determined by analysis of cytochrome b sequences. Evolution, 51, 1584-1592.
5. Alves MJ, Coelho MM, Próspero MI, Collares-Pereira MJ (1999) Production of fertile unreduced sperm by hybrids males of the Rutilus alburnoides complex (Teleostei, Cyprinidae): an alternative route to genome tetraploidization in unisexuals. Genetics, 151, 277-283.
6. Alves MJ, Collares-Pereira MJ, Dowling TE, Coelho MM (2002) The genetics of maintenance of an all-male lineage in the Squalius alburnoides complex. Journal of Fish Biology, 60, 649-662.
7. Avise JC (1995) Introduction: the scope of conservation genetics. In: Conservation Genetics: Case Histories from Nature (eds Avise JC, Hamrick JL), pp. 1-9. Chapman & Hall, New York.
8. Avise JC (2000) PhyloGeography: the History and Formation of Species. Harvard University Press, Cambridge.
9. Avise JC, Quattro JM, Vrijenhoek RC (1992) Molecular clones within organismal clones: mitochondrial DNA phylogenies and the evolutionary histories of unisexual vertebrates. In: Evolutionary Biology, vol. 26 (eds Hecht MK, Wallace B, Maclntyre RJ), pp. 225-246. Plenum Press, New York.
10. Barbosa BP, Reis RP (1989) Litoestratigrafia e modelo deposicional dos sedimentos aluviais do Neogénico superior da Bacia do Tejo (Tomar-Lavre), Portugal. Comunicações Dos Serviços Geológicos de Portugal, 75, 89-97.
11. Brito M, Briolay J, Galtier N, Bouvet Y, Coelho MM (1997) Phylogenetic relationships within the genus Leuciscus (Pisces, Cyprinidae) in Portuguese fresh waters, based on mitochondrial DNA cytochrome b sequences. Molecular Phylogenetics and Evolution, 8, 435-442.
12. Carmona JA, Olivero J, Doadrio I, Real R, Márquez AL, Vargas JM (2000) Testing for inter-drainage connections on the basis of the distribution pattern of endemic freshwater fishes. Archives of Hydrobiology, 150, 101-116.
13. Carmona JA, Sanjur OI, Doadrio I, Machordom A, Vrijenhoek RC (1997) Hybridogenetic reproduction and maternal ancestry of polyploid Iberian fish: the Tropidophoxinellus alburnoides complex. Genetics, 146, 983-993.
14. Cunha C, Pimentel N, Pereira I (2000) Assinatura tectonosedimentar do auge da compressão bética em Portugal: a descontinuidade sedimentar Valesiano terminal-Turoliano. Ciências Da Terra (UNL), 14, 61-72.
15. Dawley RM (1989) An introduction to unisexual vertebrates. In: Evolution and Ecology of Unisexual Vertebrates (eds Dawley RM, Bogart JP), pp. 1-18. New York State Museum, New York.
16. De la Peña (1995) Los peces terciarios de las cuencas continentales ibéricas: marco histórico y registo fósil conocido. Coloquios de Paleontología, 47, 25-46.
17. Doadrio I, Carmona JA (2003) Testing freshwater Lago Mare dispersal theory on the phylogeny relationships of Iberian cyprinids genera Chondrostoma and Squalius (Cypriniformes, Cyprinidae). Graellsia, 59, 457-473.
18. Doadrio I, Carmona JA (2004) Phylogenetic relationship of genus Chondrostoma (Cyprinidae) using cytochrome b sequences. Molecular Phylogenetics and Evolution, in press.
19. Dowling TE, Secor CL (1997) The role of hybridization and introgression in the diversification of animals. Annual Reviews of Ecology and Systematics, 28, 593-619.
20. Dowling TE, Tobbets CA, Minckley WL, Smith GR (2002) Evolutionary relationships of the Plagopterins (Teleostei: Cyprinidae) from cytochrome b sequences. Copeia, 2002, 665-678.
21. Felsentein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791.
22. Gu X, Fu YX, Li WH (1995) Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites. Molecular Biology and Evolution, 12, 546-557.
23. Hedges SB, Bogart JP, Maxson LR (1992) Ancestry of unisexual salamanders. Nature, 356, 708-710.
24. Huelsenbeck JP, Ronquist FR (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755.
25. Janko K, Kotlík P, Ráb P (2003) Evolutionary history of asexual hybrid loaches (Cobitis: Teleostei) inferred frm phylogenetic analysis of mitochondrial DNA variation. Journal of Evolutionary Biology, 16, 1280-1287.
26. López-Martínez N (1989) Tendencias en paleobiogeografía el futuro de la biogeografía del pasado. In: Paleontología (ed. Aguirre E), pp. 271-299. CSIC, Madrid.
27. Palumbi SR (1996) Nucleic acids II: the polymerase chain reaction. In: Molecular Systematics (eds Hillis DM, Moritz C, Mable BK), 2nd edn. Sinauer Associates, Inc., Sunderland, MA.
28. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
29. Quattro JM, Avise JC, Vrijenhoek RC (1991) Molecular evidence for multiple origins of hybridogenetic fish clones (Poeciliidae: Poeciliopsis). Genetics, 127, 391-398.
30. Quattro JM, Avise JC, Vrijenhoek RC (1992) An ancient clonal lineage in the fish genus Poeciliopsis (Atheriniformes: Poeciliidae). Proceedings of the National Academy of Sciences USA, 89, 348-352.
31. Robinson M, Gouy M, Gautier C, Mouchiroud D (1998) Sensitivity of the relative-rate test to taxonomic sampling. Molecular Biology and Evolution, 15, 1091-1098.
32. Robison-Rechavi M, Huchon D (2000) RRTREE: relative-rate tests between groups of sequences on a phylogenetic tree. Bioinformatics, 16, 296-297.
33. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, New York.
34. Sanjur OI, Carmona JA, Doadrio I (2003) Evolutionary and biogeographical patterns within Iberian populations of the genus Squalius inferred from molecular data. Molecular Phylogenetics and Evolution, 29, 20-30.
35. Sarich VM, Wilson AC (1973) Generation time and genomic evolution in primates. Science, 179, 1144-1147.
36. Schartl M, Nanda I, Schlupp I, Wilde B, Epplen JT, Schmid M, Parzefall J (1995) Incorporation of subgenomic amounts of DNA as compensation for mutational load in a gynogenetic fish. Nature, 373, 68-71.
37. Schmidt TR, Gold JR (1993) Complete sequence of the mitochondrial cytochrome b gene in the Cherryfin Shiner, Lythrurus roseipinnis (Teleostei: Cyprinidae). Copeia, 1993, 880-883.
38. Schultz RJ (1969) Hybridization, unisexuality and polyploidy in the teleost Poeciliopsis (Poeciliidae) and other vertebrates. American Naturalist, 103, 605-619.
39. Schultz RJ (1977) Evolution and ecology of unisexual fishes. Evolutionary Biology, 10, 277-331.
40. Schultz RJ (1980) The role of polyploidy in the evolution of fishes. In: Polyploidy: Biology Relevance (ed. Lewis WH), pp. 313-339. Plenum Press, New York.
41. Shimodaira H, Hasegawa M (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution, 16, 1114-1116.
42. Spolsky CM, Phillips CA, Uzzell T (1992) Antiquity of clonal salamander lineages revealed by mitochondrial DNA. Nature, 356, 706-708.
43. Spolsky CM, Uzzell T (1986) Evolutionary history of the hybrido-genetic hybrid frog Rana esculenta as deduced from mtDNA analyses. Molecular Biology and Evolution, 3, 44-56.
44. Strimmer K, Von-Haeseler A (1996) Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Molecular Biology and Evolution, 13, 964-969.
45. Swofford DL (2001) PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods), version 4. Sinauer Associates, Inc, Sunderland, MA.
46. Vrijenhoek RC (1979) Factors affecting clonal diversity and coexistence. American Zoologist, 19, 787-797.
47. Vrijenhoek RC (1984) Ecological differentiation among clones: the frozen niche variation model. In: Population Biology and Evolution (eds Wöhrmann K, Loeschcke V), pp. 217-231. Springer-Verlag, Berlin.
48. Vrijenhoek RC (1998) Clonal organisms and the benefits of sex. In: Molecular Ecology (ed. Carvalho GR), pp. 151-172. IOS Press, Amsterdam.
49. Wu CI, Li WH (1985) Evidence for higher rates of nucleotide substitution in rodents than in man. Proceedings of the National Academy of Sciences USA, 85, 1741-1745.