Structures of d(Gm5CGm5CGCGC) and d(GCGCGm 5CGm5C): Effects of methylation on alternating DNA octamers

Acta Crystallographica Section D: Biological Crystallography

Volumn 60, Issue 1, 2004, Pages 61-65

  Shi, Ke ^a   Pan, Baocheng ^a   Tippin, Douglas ^a   Sundaralingam, Muttaiya ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; OLIGONUCLEOTIDE;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; DNA METHYLATION; X RAY CRYSTALLOGRAPHY;

CRYSTALLOGRAPHY, X-RAY; DNA; DNA METHYLATION; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; OLIGONUCLEOTIDES;

EID: 4344595148     PISSN: 09074449     EISSN: None     Source Type: Journal    
DOI: 10.1107/S0907444903021899     Document Type: Article

References (27)

1. Antequera, F. & Bird, A. (1993). DNA Methylation: Molecular Biology and Biological Significance, edited by J. P. Jost & H. P. Saluz, pp. 169-185. Boston: Birkhauser Verlag.
2. Ban, C., Ramakrishnan, R. & Sundaralingam, M. (1996). Biophys. J. 71, 1215-1221.
3. Behe, M. & Felsenfeld, G. (1981). Proc. Natl Acad. Sci. USA, 78, 1619-1623.
4. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998). Acta Cryst. D54, 905-921.
5. Chen, X., Ramakrishnan, B., Rao, S. T. & Sundaralingam, M. (1994). Nature Struct. Biol. 1, 169-175.
6. Chen, X., Ramakrishnan, B. & Sundaralingam, M. (1997). J. Mol. Biol. 267, 1157-1170.
7. Drew, H., Takano, T., Itakura, K. & Dickerson, R. E. (1980). Nature (London), 286, 567-573.
8. Eisenstein, M. & Shakked, Z. (1995). J. Mol. Biol. 248, 662-678.
9. Frederick, C. A., Saal, D., van der Marel, G. A., van Boom, J. H., Wang, A. H.-J. & Rich, A. (1987). Biopolymers, 26, S145-S160.
10. Fujii, S., Wang, A. H.-J., Quigley, G. J., Westerink, H., van der Marel, G. A., van Boom, J. H. & Rich, A. (1985). Biopolymers, 24, 243-250.
11. Fujii, S., Wang, A. H.-J., van der Marel, G., van Boom, J. H. & Rich, A. (1982). Nucleic Acids Res. 10, 7879-7892.
12. Jain, S. C., Zon, G. & Sundaralingam, M. (1987). J. Mol. Biol. 197, 141-145.
13. Jain, S. C., Zon, G. & Sundaralingam, M. (1989). Biochemistry, 28, 2360-2364.
14. Lavery, R. & Sklenar, H. (1989) J. Biomol. Struct. Dyn. 4, 655-667.
15. Mitra, S. N., Wahl, M. C. & Sundaralingam, M. (1999). Acta Cryst. D55, 602-609.
16. Mooers, B. H., Schroth, G. P., Baxter, W. W. & Ho, P. S. (1995). J. Mol. Biol. 249, 772-784.
17. Quadrifoglio, F., Manzini, G. & Yathindra, N. (1984). J. Mol. Biol. 175, 419-423.
18. Sack, J. & Quiocho, F. A. (1992). CHAIN: Crystallographic Modeling Program. Baylor College of Medicine, Houston, TX, USA.
19. Sasaki, H., Allen, N. D. & Surani, M. A. (1993). DNA Methylation: Molecular Biology and Biological Significance, edited by J. P. Jost & H. P. Saluz, pp. 469-186. Boston: Birkhauser Verlag.
20. Schroth, G. P., Kagawa, T. F. & Ho, P. S. (1993). Biochemistry, 32, 13381-13392.
21. Singer-Sam, J. & Riggs, A. D. (1993). DNA Methylation: Molecular Biology and Biological Significance, edited by J. P. Jost & H. P. Saluz, pp. 358-384. Boston: Birkhauser Verlag.
22. Tippin, D. B., Ramakrishnan, B. & Sundaralingam, M. (1997). J. Mol. Biol. 270, 247-258.
23. Vargason, J. M., Eichman, B. F. & Ho, P. S. (2000). Nature Struct. Biol. 7, 758-761.
24. Vargason, J. M., Henderson, K. & Ho, P. S. (2001). Proc. Natl Acad. Sci. USA, 98, 7265-7270.
25. Wahl, M. C. & Sundaralingam, M. (1997). Biopolymers, 44, 45-63.
26. Wang, A. H.-J., Hakoshima, T., van der Marel, G. A., van Boom, J. H. & Rich, A. (1984). Cell, 37, 321-331.
27. Wang, A. H.-J., Quigley, G. J., Kolpak, F. J., Crawford, J. L., van Boom, J. H., van der Marel, G. A. & Rich, A. (1979). Nature (London), 282, 680-686.