The extended and eccentric E-DNA structure induced by cytosine methylation or bromination

Nature Structural Biology

Volumn 7, Issue 9, 2000, Pages 758-761

  Vargason, Jeffrey M ^a   Eichman, Brandt F ^a   Ho, P Shing ^a  

^a OREGON STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DNA;

ARTICLE; BROMINATION; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; DNA DETERMINATION; DNA METHYLATION; DNA STRUCTURE; NONHUMAN; PRIORITY JOURNAL; STRUCTURE ANALYSIS;

BASE SEQUENCE; BROMINE; CPG ISLANDS; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; CYTOSINE; DNA; DNA METHYLATION; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; SOLVENTS; WATER;

EID: 0033818701     PISSN: 10728368     EISSN: None     Source Type: Journal    
DOI: 10.1038/78985     Document Type: Article

References (30)

1. Noyer-Weidner, M. & Trautner, T.A. In DNA methylation: molecular biology and biological significance. (eds, Jost, J.P. & Saluz, H.P.), 39-108 (Birkhäuser Verlag, Boston; 1993).
2. Singer-Sam, J. & Riggs, A.D. In DNA methylation: molecular biology and biological significance. (eds, Jost, J.P. & Saluz, H.P.) 358-384 (Birkhäuser Verlag, Boston; 1993).
3. Sasaki, H., Allen, N.D. & Surani, M. A. In DNA Methylation: Molecular Biology and Biological Significance. (eds Jost, J.P. & Saluz, H.P.) 469-486 (Birkhäuser Verlag, Boston, 1993).
4. Antequera, F. & Bird, A. In DNA methylation: molecular biology and biological significance. (eds, Jost, J.P. & Saluz, H.P.), 169-185 (Birkhäuser Verlag, Boston; 1993).
5. Mooers, B.H.M., Schroth, G.P., Baxter, W.W. & Ho, P.S. J. Mol. Biol. 249, 772-784 (1995).
6. Frederick, C.A. et al. Biopolymers 26, S145-S160 (1987).
7. Behe, M. & Felsenfeld, G. Proc. Natl Acad. Sci. USA 78, 1619-1623 (1981).
8. Fujii, S., Wang, A.H.-J., van der Marel, G., van Boom, J.H. & Rich, A. Nucleic Acids Res. 10, 7879-7892 (1982).
9. Timsit, Y. & Moras, D. Methods Enzymol. 211, 409-429 (1992).
10. Xu, Q., Shoemaker, R.K. & Braunlin, W.H. Biophys. J. 65, 1039-1049 (1993).
11. Takahara, P.M., Rosenzweig, A.C., Frederick, C.A. & Lippard, S.J. Nature 377, 649-652 (1995).
12. Arnott, S., Chandrasekaran, R., Millane, R.P. & Park, H.-S. J. Mol. Biol. 188, 631-640 (1986).
13. Doucet, J., Benoit, J.-P., Cruse, W.B.T., Prange, T. & Kennard, O. Nature 337, 190-192 (1989).
14. Mayer-Jung, C., Moras, D. & Timsit, Y. EMBO J. 17, 2709-2718 (1998).
15. Timsit, Y. & Moras, D. EMBO J. 13, 2737-2746 (1994).
16. Wang, A.H.-J., Fujii, S., van Boom, J.H. and Rich, A. Proc. Natl. Acad. Sci. USA 79, 3968-3972 (1982).
17. Ng, H.-L., Kopka, M.L., & Dickerson, R.E. Proc. Natl. Acad. Sci. USA 97, 2035-2039 (2000).
18. Zhang, X. & Mathews, C.K. J. Biol. Chem. 269, 7066-7069 (1994).
19. Brünger, A.T. X-PLOR version 3.1: a system for X-ray crystallography and NMR. (Yale University Press, New Haven, Connecticut; 1992).
20. Dickerson, R.E. Methods Enzymol. 211, 67-111 (1992).
21. Navaza, J. Acta Crystallogr. A 50, 157-163 (1994).
22. Lavery, R. & Sklenar, H. J. Biomol. Struct. Dyn. 6, 655-667 (1989).
23. Merritt, E.A. & Bacon, D.J. Methods Enzymol. 277, 505-524 (1997).
24. Carter, C.W., Jr. Biochimie 77, 92-98 (1995).
25. Weiner, S.J. et al. J. Am. Chem. Soc. 106, 765-784 (1984).
26. Otwinowski, Z. & Minor, W. Methods Enzymol. 276, 307-326 (1997).
27. Pflugrath, J.W. Acta Crystallogr. D 55, 1718-1725 (1999).
28. Parkinson, G., Vojtechovsky, J., Clowney, L., Brünger, A.T. & Berman, H.M. Acta Crystallogr. D 52, 57-64 (1996).
29. Brünger, A.T. et al. Acta Crystallogr D 54, 905-921 (1998).
30. Brünger, A.T. Nature 355, 472-475 (1992).