Fluorescence correlation spectroscopy and quantitative cell biology

Differentiation

Volumn 72, Issue 1, 2004, Pages 1-10

  Levin, Mikhail K ^a   Carson, John H ^a  

^a UNIVERSITY OF CONNECTICUT HEALTH CENTER   (United States)

Author keywords

Avalanche photodiode; Fluorescence correlation spectroscopy; Green fluorescent protein; Photon count histogram

Indexed keywords

FLUORESCENT DYE; PROTEIN;

CELL FUNCTION; CYTOLOGY; DIFFUSION COEFFICIENT; FLUORESCENCE CORRELATION SPECTROSCOPY; HISTOGRAM; IN VIVO STUDY; KINETICS; MOLECULAR INTERACTION; OLIGOMERIZATION; PHOTON; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REVIEW; ANIMAL; INSTRUMENTATION; METABOLISM; METHODOLOGY; MOLECULAR BIOLOGY; SPECTROFLUOROMETRY; STATISTICS;

ANIMALS; MOLECULAR BIOLOGY; PHOTONS; PROTEINS; SPECTROMETRY, FLUORESCENCE; STATISTICS;

EID: 4344570761     PISSN: 03014681     EISSN: 14320436     Source Type: Journal    
DOI: 10.1111/j.1432-0436.2004.07201002.x     Document Type: Review

References (27)

1. Bacia, K. and Schwille, P. (2003) A dynamic view of cellular processes by in vivo fluorescence auto- and cross-correlation spectroscopy. Methods 29:74-85.
2. Beechem, J.M. (1992) Global analysis of biochemical and biophysical data. Methods Enzymol 210:37-53.
3. Berland, K.M., So, P.T.C. and Gratton, E. (1995) Two-photon fluorescence correlation spectroscopy: method and application to the intracellular environment. Biophys J 68:694-701.
4. Chen, Y., Muller, J.D., Berland, K.M. and Gratton, E. (1999) Fluorescence fluctuation spectroscopy. Methods 19:234-252.
5. Chen, Y., Muller, J.D., Ruan, Q. and Gratton, E. (2002) Molecular brightness characterization of EGFP in vivo by fluorescence fluctuation spectroscopy. Biophys J 82:133-144.
6. Di Cera, E. (1992) Use of weighting functions in data fitting. Methods Enzymol 210:68-86.
7. Draper, N.R. and Smith, H. (1998) Applied regression analysis. 3rd ed. John Wiley & Sons, New York.
8. Fradin, C., Abu-Arish, A., Granek, R. and Elbaum, M. (2003) Fluorescence correlation spectroscopy close to a fluctuating membrane. Biophys J 84:2005-2020.
9. Haupts, U., Maiti, S., Schwille, P. and Webb, W.W. (1998) Dynamics of fluorescence fluctuations in green fluorescent protein observed by fluorescence correlation spectroscopy. Proc Natl Acad Sci USA 95:13573-13578.
10. Hess, S.T., Huang, S., Heikal, A.A. and Webb, W.W. (2002) Biological and chemical applications of fluorescence correlation spectroscopy: a review. Biochemistry 41:697-705.
11. Johnson, M.L. and Faunt, L.M. (1992) Parameter estimation by least-squares methods. Methods Enzymol 210:1-37.
12. Kask, P., Palo, K., Ullmann, D. and Gall, K. (1999) Fluorescence- intensity distribution analysis and its application in biomolecular detection technology. Proc Natl Acad Sci USA 96:13756-13761.
13. Kohler, R.H., Schwille, P., Webb, W.W. and Hanson, M.R. (2000) Active protein transport through plastid tubules: velocity quantified by fluorescence correlation spectroscopy. J Cell Sci 113:3921-3930.
14. Krichevsky, O. and Bonnet, G. (2002) Fluorescence correlation spectroscopy: the technique and its applications. Rep Prog Phys 65:251-297.
15. Larson, D.R., Ma, Y.M., Vogt, V.M. and Webb, W.W. (2003) Direct measurement of Gag-Gag interaction during retrovirus assembly with FRET and fluorescence correlation spectroscopy. J Cell Biol 162:1233-1244.
16. Luby-Phelps, K. (2000) Cytoarchitecture and physical properties of cytoplasm: volume, viscosity, diffusion, intracellular surface area. Int Rev Cytol 192:189-221.
17. Magde, D., Elson, E. and Webb, W.W. (1972) Thermodynamic fluctuations in a reacting system: measurement by fluorescence correlation spectroscopy. Phys Rev Lett 29:705-708.
18. Motulsky, H.J. and Christopoulos, A. (2003) Fitting models to biological data using linear and nonlinear regression. A practical guide to curve fitting. Graph Pad Software Inc., San Diego, http://www.graphpad.com, accessed January 5, 2004.
19. Palo, K., Mets, G., Jäger, S., Kask, P. and Gall, K. (2000) Fluorescence intensity multiple distributions analysis: concurrent determination of diffusion times and molecular brightness. Biophys J 79:2858-2866.
20. Rigler, R. and Elson, E.L. (eds.) (2001) Fluorescence correlation spectroscopy: theory and applications. Springer, Berlin.
21. Rigler, R., Mets, U., Widengren, J. and Kask, P. (1993) Fluorescence correlation spectroscopy with high count rates and low back-ground: analysis of translational diffusion. Eur J Biophys 22:169-175.
22. Saffarian, S. and Elson, E.L. (2003) Statistical analysis of fluorescence correlation spectroscopy: the standard deviation and bias. Biophys J 84:2030-2042.
23. Schwille, P., Meyer-Almes, F.-J. and Rigler, R. (1997) Dual-color fluorescence cross-correlation spectroscopy for multicomponent diffusional analysis in solution. Biophys J 72:1878-1886.
24. Schwille, P., Kummer, S., Heikal, A.A., Moerner, W.E. and Webb, W.W. (2000) Fluorescence correlation spectroscopy reveals fast optical excitation-driven intramolecular dynamics of yellow fluorescent proteins. Proc Natl Acad Sci USA 97:151-156.
25. Seksek, O., Biwersi, J. and Verkman, A.S. (1997) Translational diffusion of macromolecule-sized solutes in cytoplasm and nucleus. J Cell Biol 138:131-142.
26. Terada, S., Kinjo, M. and Hirokawa, N. (2000) Oligomeric tubulin in large transporting complex is transported via kinesin in squid giant axons. Cell 103:141-155.
27. Wohland, T., Rigler, R. and Vogel, H. (2001) The standard deviation in fluorescence correlation spectroscopy. Biophys J 80:2987-2999.