Chlorocatechol catabolic enzymes from Achromobacter xylosoxidans A8

International Biodeterioration and Biodegradation

Volumn 54, Issue 2-3, 2004, Pages 175-181

  Jencova, Vera ^a   Strnad, Hynek ^a,b   Chodora, Zdenek ^a   Ulbrich, Pavel ^a   Hickey, W J ^c   Paces, Vaclav ^a,b  

^a INSTITUTE OF CHEMICAL TECHNOLOGY   (Czech Republic)

^b INSTITUTE OF MOLECULAR GENETICS   (Czech Republic)

^c UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

Achromobacter xylosoxidans; Biodegradation; Chlorocatechol; Large plasmid; Modified ortho cleavage pathway

Indexed keywords

DEGRADATION; ESCHERICHIA COLI; GENES; POLYCHLORINATED BIPHENYLS; SOILS; SUBSTRATES;

CATABOLIC ENZYMES; PLASMIDS;

ENZYMES;

GENETIC ANALYSIS; MICROBIOLOGY; PCB;

ACHROMOBACTER; ACHROMOBACTER XYLOSOXIDANS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; PSEUDOMONAS; PSEUDOMONAS CHLORORAPHIS; PSEUDOMONAS SP.; RALSTONIA; WAUTERSIA; WAUTERSIA EUTROPHA;

EID: 4344568784     PISSN: 09648305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibiod.2004.03.007     Document Type: Conference Paper

References (22)

1. Dorn E., Knackmuss E.M. Chemical structure and biodegradability of halogenated aromatic compounds. Biochemical Journal. 174:1978;85-94
2. Eulberg D., Kourbatova E.M., Golovleva L.A., Schlomann M. Evolutionary relationship between chlorocatechol catabolic enzymes from Rhodococcus opacus 1CP and their counterparts in proteobacteria: sequence divergence and functional convergence. Journal of Bacteriology. 180:1998;1082-1094
3. Frantz B., Chakrabarty A.M. Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation. Proceedings of the National Academy of Science USA. 84:1987;4460-4464
4. Fulthorpe R.R., Rhodes A.N., Tiedje J.M. High levels of endemicity of 3-chlorobenzoate-degrading soil. Bacteria. Applied and Environmental Microbiology. 64:1998;1620-1627
5. Hickey W.J., Sabat G., Yuroff A.S., Arment A.R., Perez-Lesher J. Cloning, nucleotide sequencing and functional analysis of a novel, mobile cluster of biodegradation genes from the Pseudomonas aeruginosa strain JB2. Applied and Environmental Microbiology. 67:2001;4603-4609
6. Kim S.I., Leem S.H., Choi J.S., Ha K.S. Organization and transcriptional characterization of the cat1 gene cluster in Acinetobacter lwoffi K24. Biochemical and Biophysical Research Communications. 243:1998;289-294
7. Leveau J., van der Meer J.R. The tfdR gene product can successfully take over the role of the insertion element-inactivated TfdT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP124(pJP4). Journal of Bacteriology. 178:1996;6824-6832
8. Leveau J.H., van der Meer J.R. Genetics characterization of insertion sequence ISJP4 on plasmid pJP4 from Ralstonia eutropha JMP134(pJP4). Journal of Bacteriology. 180:1997;2237-2243
9. Liu S., Ogawa N., Miyashita K. The chlorocatechol degradative genes, tfdT-CDEF, of Burkholderia sp. strain NK8 are involved in chlorobenzoate degradation and induced by chlorobenzoates and chlorocatechols. Gene. 268:2001;207-214
10. Murakami S., Takashima A., Takemoto J., Takenaka S., Shinke R., Aoki K. Cloning and sequence analysis of two catechol-degrading gene clusters from the aniline-assimilating bacterium Frateuria species ANA-18. Gene. 226:1999;189-198
11. Ogawa N., Miyashita K. Recombination of a 3-chlorobenzoate catabolic plasmid from Alcaligenes eutrophus NH9 mediated by direct repeat elements. Applied and Environmental Microbiology. 61:1995;3788-3795
12. Ogawa N., Miyashita K. The chlorocatechol catabolic transpozon Tn5707 of Alcaligenes eutrophus NH9, Carrying a gene cluster highly homologous to that in the 1,2,4-trichlorobenzene-degrading bacterium Pseudomonas sp. strain P51, confers the ability to grow on 3-chlorobenzoate. Applied and Environmental Microbiology. 65:1999;724-731
13. Pavlu L., Vosahlova J., Klinerova H., Prouza M., Demnerova K., Brenner V. Characterisation of chlorobenzoate degraders isolated from polychlorinated biphenyl-contaminated soil and sediment in the Czech Republic. Journal of Applied Microbiology. 87:1999;381-386
14. II gene modules in catabolism of 3-chlorobenzoate by Ralstonia eutropha JMP134(pJP4) Applied and Environmental Microbiology. 66:2000;1602-1608
15. Perkins E.J., Gordon M.P., Caceres O., Lurquin P.F. Organization and sequence analysis of the 2,4-dichlorophenol hydroxylase and dichlorocatechol oxidative operons of plasmid pJP4. Journal of Bacteriology. 172:1990;2351-2359
16. Poh R.P.C., Xia X., Bruce I.J., Smith A.R.W. 2,4-Dichlorophenoxyacetate/ alpha-ketoglutarate dioxygenases from Burkholderia cepacia NK8 and Ralstonia eutropha JMP134. Microbios. 105:2001;43-63
17. Potrawfke T., Armengaud J., Wittich R.M. Chlorocatechols substituted at positions 4 and 5 are substrates of the broad-spectrum chlorocatechol 1,2-dioxygenase of Pseudomonas chlororaphis RW71. Journal of Bacteriology. 183:2001;997-1011
18. Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning: A Laboratory Manual. 2nd Edition:1989;Cold Spring Harbor Laboratory Press, ColdSpring Harbor, New York
19. Staden R., Beal K.F., Bonfield J.K. The Staden Package. Computer Methods in Molecular Biology. 132:1998;115-130
20. Van der Meer J.R., Eggen R.I.L., Zehnder A.J.B. Sequence analysis of the P. sp. P51 tcb gene cluster, which encodes metabolism of chlorinated catechols. Journal of Bacteriology. 173:1991;2425-2434
21. Van der Meer J.R., de Vos W.M., Harayama S. Molecular mechanisms of genetic adaptation of xenobiotic compounds. Microbiological Reviews. 56:1992;677-694
22. Vedler E., Koiv V., Heinaru A. TfdR, the LysR-type transcriptional activator, is responsible for the activation of the tfdCB operon of Pseudomonas putida 2,4-dichlorophenoxyacetic acid degradative plasmid pEST4011. Gene. 245:2000;161-168