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Volumn 2, Issue 3, 2008, Pages 391-398

DGGE and 16S rDNA analysis reveals a highly diverse and rapidly colonising bacterial community on different substrates in the rumen of goats

Author keywords

16S rDNA analysis; DGGE; Goats; Substrate associated bacterial community

Indexed keywords

BACTERIA (MICROORGANISMS); CAPRA HIRCUS; LOLIUM; LOLIUM MULTIFLORUM;

EID: 43049086339     PISSN: 17517311     EISSN: 1751732X     Source Type: Journal    
DOI: 10.1017/S1751731107001231     Document Type: Article
Times cited : (24)

References (37)
  • 1
    • 0018848792 scopus 로고
    • Evaluation by electron microscopy and anaerobic culture of types of rumen bacteria associated with digestion of forage cell walls
    • Akin DE 1980. Evaluation by electron microscopy and anaerobic culture of types of rumen bacteria associated with digestion of forage cell walls. Applied and Environmental Microbiology 39, 242-252.
    • (1980) Applied and Environmental Microbiology , vol.39 , pp. 242-252
    • Akin, D.E.1
  • 3
    • 43049140976 scopus 로고    scopus 로고
    • Cheng KJ and McAllister TA 1997. Compartmentation in the rumen. In The rumen microbial ecosystem, 2nd edition (ed. PN Hobson and CS Stewart), pp. 492-522. Blackie Academic and Professional, London.
    • Cheng KJ and McAllister TA 1997. Compartmentation in the rumen. In The rumen microbial ecosystem, 2nd edition (ed. PN Hobson and CS Stewart), pp. 492-522. Blackie Academic and Professional, London.
  • 6
    • 0023173758 scopus 로고
    • Quantitation of microorganisms associated with the particulate phase of ruminal ingesta
    • Craig WM, Broderick GA and Ricker DB 1987. Quantitation of microorganisms associated with the particulate phase of ruminal ingesta. Journal of Nutrition 117, 56-62.
    • (1987) Journal of Nutrition , vol.117 , pp. 56-62
    • Craig, W.M.1    Broderick, G.A.2    Ricker, D.B.3
  • 7
    • 43049126988 scopus 로고    scopus 로고
    • Dehority BA and Orpin CG 1997. Development of, and natural fluctuations in, rumen microbial populations. In The rumen microbial ecosystem, 2nd edition (ed. PN Hobson and CS Stewart), pp. 196-245. Blackie Academic and Professional, London.
    • Dehority BA and Orpin CG 1997. Development of, and natural fluctuations in, rumen microbial populations. In The rumen microbial ecosystem, 2nd edition (ed. PN Hobson and CS Stewart), pp. 196-245. Blackie Academic and Professional, London.
  • 9
    • 0030519249 scopus 로고    scopus 로고
    • Microbial colonisation and degradation of some fibrous crop residues in the rumen of goats
    • Ho YW, Abdullah N and Jalaludin S 1996. Microbial colonisation and degradation of some fibrous crop residues in the rumen of goats. Asian-Australian Journal of Animal Science 9, 519-524.
    • (1996) Asian-Australian Journal of Animal Science , vol.9 , pp. 519-524
    • Ho, Y.W.1    Abdullah, N.2    Jalaludin, S.3
  • 10
    • 0031768998 scopus 로고    scopus 로고
    • Changes in bacterial species composition in enrichment cultures with various dilutions of inoculum as monitored by denaturing gradient gel electrophoresis
    • Jackson CR, Roden EE and Perry F 1998. Changes in bacterial species composition in enrichment cultures with various dilutions of inoculum as monitored by denaturing gradient gel electrophoresis. Applied and Environmental Microbiology 64, 5046-5048.
    • (1998) Applied and Environmental Microbiology , vol.64 , pp. 5046-5048
    • Jackson, C.R.1    Roden, E.E.2    Perry, F.3
  • 11
    • 0034803204 scopus 로고    scopus 로고
    • Analysis of the rumen bacterial diversity under two different diet conditions using denaturing gradient gel electrophoresis, random sequencing, and statistical ecology approaches
    • Kocherginskaya SA, Aminov RI and White BA 2001. Analysis of the rumen bacterial diversity under two different diet conditions using denaturing gradient gel electrophoresis, random sequencing, and statistical ecology approaches. Anaerobe 7, 119-134.
    • (2001) Anaerobe , vol.7 , pp. 119-134
    • Kocherginskaya, S.A.1    Aminov, R.I.2    White, B.A.3
  • 12
    • 0035856590 scopus 로고    scopus 로고
    • Development and use of competitive PCR assays for the rumen cellulolytic bacteria: Fibrobacter succinogenes, Ruminococcus albus and Ruminococcus flavefaciens
    • Koike S and Kobayashi Y 2001. Development and use of competitive PCR assays for the rumen cellulolytic bacteria: Fibrobacter succinogenes, Ruminococcus albus and Ruminococcus flavefaciens. FEMS Microbiology Letters 204, 361-366.
    • (2001) FEMS Microbiology Letters , vol.204 , pp. 361-366
    • Koike, S.1    Kobayashi, Y.2
  • 13
    • 0038749347 scopus 로고    scopus 로고
    • Kinetics of in sacco fiber-attachment of representative ruminal cellulolytic bacteria monitored by competitive PCR
    • Koike S, Pan J, Kobayashi Y and Tanaka K 2003a. Kinetics of in sacco fiber-attachment of representative ruminal cellulolytic bacteria monitored by competitive PCR. Journal of Dairy Science 86, 1429-1435.
    • (2003) Journal of Dairy Science , vol.86 , pp. 1429-1435
    • Koike, S.1    Pan, J.2    Kobayashi, Y.3    Tanaka, K.4
  • 14
    • 0344307653 scopus 로고    scopus 로고
    • Phylogenetic analysis of fibre-associated rumen bacterial community and PCR detection of uncultured bacteria
    • Koike S, Yoshitani S, Kobayashi Y and Yanaka K 2003b. Phylogenetic analysis of fibre-associated rumen bacterial community and PCR detection of uncultured bacteria. FEMS Microbiology Letters 229, 23-30.
    • (2003) FEMS Microbiology Letters , vol.229 , pp. 23-30
    • Koike, S.1    Yoshitani, S.2    Kobayashi, Y.3    Yanaka, K.4
  • 15
    • 0037445311 scopus 로고    scopus 로고
    • Effect of fermentable carbohydrates on piglet faecal bacterial communities as revealed by denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA
    • Konstantinov SR, Zhu WY, Williams BA, Tamminga S, de Vos WM and Akkermans ADL 2003. Effect of fermentable carbohydrates on piglet faecal bacterial communities as revealed by denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA. FEMS Microbiology Ecology 43, 225-235.
    • (2003) FEMS Microbiology Ecology , vol.43 , pp. 225-235
    • Konstantinov, S.R.1    Zhu, W.Y.2    Williams, B.A.3    Tamminga, S.4    de Vos, W.M.5    Akkermans, A.D.L.6
  • 16
    • 0022619118 scopus 로고
    • 2 or formate to degrade gallate, pyrogallol, phloroglucinol and quercitin
    • 2 or formate to degrade gallate, pyrogallol, phloroglucinol and quercitin. Archives of Microbiology 144, 8-14.
    • (1986) Archives of Microbiology , vol.144 , pp. 8-14
    • Krumholz, L.R.1    Bryant, M.P.2
  • 17
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • ed. E Stackebrandt and M Goodfellow, pp, John Wiley and Sons, Chichester, UK
    • Lane DJ 1991. 16S/23S rRNA sequencing. In Nucleic acids techniques in bacterial systematics (ed. E Stackebrandt and M Goodfellow), pp. 115-175. John Wiley and Sons, Chichester, UK.
    • (1991) Nucleic acids techniques in bacterial systematics , pp. 115-175
    • Lane, D.J.1
  • 19
    • 0000028423 scopus 로고
    • A quantitative approach to a problem in classification
    • Michener CD and Sokal RR 1957. A quantitative approach to a problem in classification. Evolution 11, 130-162.
    • (1957) Evolution , vol.11 , pp. 130-162
    • Michener, C.D.1    Sokal, R.R.2
  • 20
    • 84998517426 scopus 로고
    • Ecological treatise on the rumen fermentation. II. The amylolytic and cellulolytic activities of the fractionated bacterial portions attached to the rumen solids
    • Minato H, Endo A, Ootomo Y and Uemura T 1966. Ecological treatise on the rumen fermentation. II. The amylolytic and cellulolytic activities of the fractionated bacterial portions attached to the rumen solids. Journal of General and Applied Microbiology 12, 53-69.
    • (1966) Journal of General and Applied Microbiology , vol.12 , pp. 53-69
    • Minato, H.1    Endo, A.2    Ootomo, Y.3    Uemura, T.4
  • 21
    • 0030986266 scopus 로고    scopus 로고
    • Competition between ruminal cellulolytic bacteria for adhesion to cellulose
    • Mosoni P, Fonty G and Gouet P 1997. Competition between ruminal cellulolytic bacteria for adhesion to cellulose. Current microbiology 35, 44-47.
    • (1997) Current microbiology , vol.35 , pp. 44-47
    • Mosoni, P.1    Fonty, G.2    Gouet, P.3
  • 22
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, de Waal EC and Uitterlinden AG 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology 59, 695-700.
    • (1993) Applied and Environmental Microbiology , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 23
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymixa detected by temperature gradient gel electrophoresis
    • Nübel U, Engelen B, Felske A, Snaidr J, Wieshuber A, Amann RI, Ludwig W and Backhaus H 1996. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymixa detected by temperature gradient gel electrophoresis. Journal of Bacteriology 178, 5636-5643.
    • (1996) Journal of Bacteriology , vol.178 , pp. 5636-5643
    • Nübel, U.1    Engelen, B.2    Felske, A.3    Snaidr, J.4    Wieshuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8
  • 24
    • 0028146779 scopus 로고
    • The use of 16S rRNA-targeted oligonucleotide probes to study competition between ruminal fibrolytic bacteria: Pure-culture studies with cellulose and alkaline peroxide-treated wheat straw
    • Odenyo AA, Mackie RI, Stahl DA and White BA 1994. The use of 16S rRNA-targeted oligonucleotide probes to study competition between ruminal fibrolytic bacteria: pure-culture studies with cellulose and alkaline peroxide-treated wheat straw. Applied and Environmental Microbiology 60, 3697-3703.
    • (1994) Applied and Environmental Microbiology , vol.60 , pp. 3697-3703
    • Odenyo, A.A.1    Mackie, R.I.2    Stahl, D.A.3    White, B.A.4
  • 25
    • 0033134723 scopus 로고    scopus 로고
    • Analysis of bacterial communities on historical glass by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA
    • Rölleke S, Gurtner C, Drewello U, Drewello R, Lubitz W and Weissmann R 1999. Analysis of bacterial communities on historical glass by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Journal of Microbiological Methods 36, 107-114.
    • (1999) Journal of Microbiological Methods , vol.36 , pp. 107-114
    • Rölleke, S.1    Gurtner, C.2    Drewello, U.3    Drewello, R.4    Lubitz, W.5    Weissmann, R.6
  • 26
    • 0028116158 scopus 로고
    • Rapid silver staining and recovery of PCR products separated on polyacrylamide gels
    • Sanguinetti CJ, Dias Neto E and Simpson AJG 1994. Rapid silver staining and recovery of PCR products separated on polyacrylamide gels. Biotechniques 17, 914-921.
    • (1994) Biotechniques , vol.17 , pp. 914-921
    • Sanguinetti, C.J.1    Dias Neto, E.2    Simpson, A.J.G.3
  • 27
    • 0034857157 scopus 로고    scopus 로고
    • A single band does not always represent single bacterial strains in denaturing gradient gel electrophoresis analysis
    • Sekiguchi H, Tomioka N, Nakahara T and Uchiyama H 2001. A single band does not always represent single bacterial strains in denaturing gradient gel electrophoresis analysis. Biotechnology Letters 23, 1205-1208.
    • (2001) Biotechnology Letters , vol.23 , pp. 1205-1208
    • Sekiguchi, H.1    Tomioka, N.2    Nakahara, T.3    Uchiyama, H.4
  • 28
    • 0030980044 scopus 로고    scopus 로고
    • Competition for cellulose among three predominant ruminal cellulolytic bacteria under substrate-excess and substrate-limited conditions
    • Shi Y, Odt CL and Weimer PJ 1997. Competition for cellulose among three predominant ruminal cellulolytic bacteria under substrate-excess and substrate-limited conditions. Applied and Environmental Microbiology 63, 734-742.
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 734-742
    • Shi, Y.1    Odt, C.L.2    Weimer, P.J.3
  • 29
    • 0036724226 scopus 로고    scopus 로고
    • The impact of chlorothalonil application on soil bacterial and fungal populations as assessed by denaturing gradient gel electrophoresis
    • Sigler WV and Turco RF 2002. The impact of chlorothalonil application on soil bacterial and fungal populations as assessed by denaturing gradient gel electrophoresis. Applied Soil Ecology 21, 107-118.
    • (2002) Applied Soil Ecology , vol.21 , pp. 107-118
    • Sigler, W.V.1    Turco, R.F.2
  • 31
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt E and Goebel BM 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. International Journal of Systematic Bacteriology 44, 846-849.
    • (1994) International Journal of Systematic Bacteriology , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 32
    • 43049141329 scopus 로고    scopus 로고
    • Stewart CS, Flint HJ and Bryant MP 1997. The rumen bacteria. In The rumen microbial ecosystem, 2nd edition (ed. PN Hobson and CS Stewart), pp. 10-72. Blackie Academic and Professional, London.
    • Stewart CS, Flint HJ and Bryant MP 1997. The rumen bacteria. In The rumen microbial ecosystem, 2nd edition (ed. PN Hobson and CS Stewart), pp. 10-72. Blackie Academic and Professional, London.
  • 35
    • 0141453444 scopus 로고    scopus 로고
    • Analysis of 16S rRNA reveals bacterial shift during in vitro fermentation of fermentable carbohydrate using piglet faeces as inoculum
    • Zhu WY, Williams BA, Konstantinov SR, Tamminga S, De Vos WM and Akkermans ADL 2003. Analysis of 16S rRNA reveals bacterial shift during in vitro fermentation of fermentable carbohydrate using piglet faeces as inoculum. Anaerobe 9, 175-180.
    • (2003) Anaerobe , vol.9 , pp. 175-180
    • Zhu, W.Y.1    Williams, B.A.2    Konstantinov, S.R.3    Tamminga, S.4    De Vos, W.M.5    Akkermans, A.D.L.6
  • 36
    • 0031684010 scopus 로고    scopus 로고
    • Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria
    • Zoetendal EG, Akkermans ADL and De Vos WM 1998. Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria. Applied and Environmental Microbiology 64, 3854-3859.
    • (1998) Applied and Environmental Microbiology , vol.64 , pp. 3854-3859
    • Zoetendal, E.G.1    Akkermans, A.D.L.2    De Vos, W.M.3
  • 37
    • 4243657196 scopus 로고    scopus 로고
    • Molecular characterization of microbial communities based on 16S rRNA sequence diversity
    • ed. L Dijkshoorn, KJ Towner and M Struelens, pp, Elsevier Science, Amsterdam, The Netherlands
    • Zoetendal EG, Akkermans ADL and De Vos WM 2001. Molecular characterization of microbial communities based on 16S rRNA sequence diversity. In New approaches for the generation and analysis of microbial typing data (ed. L Dijkshoorn, KJ Towner and M Struelens), pp. 267-298. Elsevier Science, Amsterdam, The Netherlands.
    • (2001) New approaches for the generation and analysis of microbial typing data , pp. 267-298
    • Zoetendal, E.G.1    Akkermans, A.D.L.2    De Vos, W.M.3


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