Vibrational and photoionization spectroscopy of biomolecules: Aliphatic amino acid structures

Journal of Chemical Physics

Volumn 128, Issue 16, 2008, Pages

  Hu, Yongjun ^a,b   Bernstein, Elliot R ^a  

^a Department of Environmental and Radiological Health Sciences   (United States)

^b SOUTH CHINA NORMAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; HYDROGEN BONDS; INFRARED SPECTROSCOPY; MOLECULAR STRUCTURE; MOLECULAR VIBRATIONS; PHOTOIONIZATION;

ALIPHATIC AMINO ACID STRUCTURES; FLIGHT MASS SPECTROSCOPY; PHOTOIONIZATION SPECTROSCOPY;

BIOMOLECULES;

AMINO ACID; BIOPOLYMER;

ARTICLE; CHEMICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; ISOMERISM; METHODOLOGY; PHOTON; RADIATION EXPOSURE; SPECTROSCOPY; VIBRATION;

AMINO ACIDS; BIOPOLYMERS; COMPUTER SIMULATION; ISOMERISM; MODELS, CHEMICAL; MODELS, MOLECULAR; PHOTONS; SPECTRUM ANALYSIS; VIBRATION;

EID: 42949171424     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.2902980     Document Type: Article

References (31)

1. P. Çaŗabal, I. Hunig, D. P. Gamblin, B. Liu, R. A. Jockusch, R. T. Kroemer, L. C. Snoek, A. J. Fairbanks, B. G. Davis, and J. P. Simons, J. Am. Chem. Soc. 0002-7863 10.1021/ja055891v 128, 1976 (2006); L. C. Snoek, E. G. Robertson, R. T. Kroemer, and J. P. Simons, Chem. Phys. Lett. 0009-2614 10.1016/S0009-2614(00)00320-1 321, 49 (2000); S. G. Stepanian, I. D. Reva, E. D. Radchenko, and L. Adamowicz, J. Phys. Chem. A 1089-5639 10.1021/jp984457v 103, 4404 (1999); S. G. Stephanian, I. D. Reva, E. D. Radchenko, M. T. S. Rosado, M. L. Duarte, R. Fausto, and L. Adamowicz, J. Phys. Chem. 0022-3654 102, 1041 (1998); S. G. Stephanian, I. D. Reva, E. D. Radchenko, and L. Adamowicz, J. Phys. Chem. A 1089-5639 10.1021/jp011708i 105, 10664 (2001); S. G. Stephanian, I. D. Reva, E. D. Radchenko, and L. Adamowicz, J. Phys. Chem. A 102, 4623 (1998).
2. W. L. Ryan, D. J. Gordon, and D. H. Levy, J. Am. Chem. Soc. 124, 6194 (2002).
3. M. E. Sanz, A. Lesarri, M. I. Pena, V. Vaquero, V. Cortijo, J. C. Lopez, and J. L. Alonso, J. Am. Chem. Soc. 128, 3812 (2006).
4. M. S. de Vries and P. Hobza, Annu. Rev. Phys. Chem. 0066-426X 10.1146/annurev.physchem.57.032905.104722 58, 585 (2007); H. Q. Ai, Y. X. Bu, P. Li, and Z. Q. Li, J. Chem. Phys. 120, 11600 (2004); A. Bhattacharya and E. R. Bernstein (unpublished).
5. A. Abo-Riziq, B. O. Crews, M. P. Callahan, L. Grace, and M. S. de Vries, Angew. Chem., Int. Ed. 45, 5166 (2006).
6. (a) T. S. Zwier, J. Phys. Chem. A 1089-5639 10.1021/jp056390z 110, 4133 (2006); (b) B. C. Dian, A. Longarte, and T. S. Zwier, Science 296, 2369 (2002).
7. S. Sun and E. R. Bernstein, J. Am. Chem. Soc. 118, 5086 (1996).
8. W. L. Ryan and D. H. Levy, J. Am. Chem. Soc. 123, 961 (2001).
9. P. Kulhanek, E. W. Schlag, and J. Koca, J. Am. Chem. Soc. 125, 13678 (2003).
10. P. D. Godfrey and R. D. Brown, J. Am. Chem. Soc. 117, 2019 (1995).
11. S. Blanco, A. Lesarri, J. C. Lopez, and J. L. Alonso, J. Am. Chem. Soc. 126, 11675 (2004).
12. V. Kozich, J. Dreyer, S. Ashihara, W. Werncke, and T. Elsaesser, J. Chem. Phys. 125, 074504 (2006).
13. M. F. Bush, J. S. Prell, R. J. Saykally, and E. R. Williams, J. Am. Chem. Soc. 129, 13544 (2007) and references therein.
14. E. T. J. Nibbering, J. Dreyer, O. Kuehn, J. Bredenbeck, P. Hamm, and T. Elsaesser, in Analysis and Control of Ultrafast Photoinduced Reactions, edited by, L. Woeste, and, O. Kuehn, (Springer, Heidelberg, 2007), p. 597.
15. W. Chin, J.-P. Dognon, F. Piuzzi, B. Tardivel, I. Dimicoli, and M. Mons, J. Am. Chem. Soc. 0002-7863 10.1021/ja045251c 127, 707 (2005); W. Chin, F. Piuzzi, J.-P. Dognon, I. Dimicoli, and M. Mons, J. Chem. Phys. 0021-9606 10.1063/1.2006672 123, 084301 (2005); W. Chin, F. Piuzzi, J.-P. Dognon, I. Dimicoli, B. Tardivel, and M. Mons, J. Am. Chem. Soc. 0002-7863 10.1021/ja052894z 127, 11900 (2005); W. Chin, F. Piuzzi, I. Dimicoli, and M. Mons, Phys. Chem. Chem. Phys. 8, 1033 (2006).
16. (a) I. Hunig and K. Kleinermanns, Phys. Chem. Chem. Phys. 1463-9076 10.1039/b316295h 6, 2650 (2004); (b) R. Linder, M. Nispel, T. Haber, and K. Kleinermanns, Chem. Phys. Lett. 0009-2614 10.1016/j.cplett.2005.04.109 409, 260 (2005); (c) T. Haber, K. Seefeld, and K. Kleinermanns, J. Phys. Chem. A 111, 3038 (2007).
17. A. Abo-Riziq, B.-O. Crews, M.-P. Callahan, L. Grace, and M.-S. de Vries, Chem. Phys. Lett. 431, 227 (2006).
18. K. T. Lee, J. L. Sung, K. J. Lee, Y. D. Park, and S. K. Kim, Angew. Chem., Int. Ed. 41, 4114 (2002).
19. C. Unterberg, A. Gerlach, T. Schrader, and M. Gerhards, J. Chem. Phys. 118, 8296 (2003).
20. R. A. Jockusch, R. T. Kroemer, F. O. Talbot, L. C. Snoek, P. J. Carcabal, P. Simons, M. Havenith, J. M. Bakker, I. Compagnon, G. Meijer, and G. von Helden, J. Am. Chem. Soc. 0002-7863 10.1021/ja031679k 126, 5709 (2004); P. aŗabal, R. T. Kroemer, L. C. Snoek, J. P. Simons, J. M. Bakker, I. Compagnon, G. von Helden, and G. Meijer, Phys. Chem. Chem. Phys. 6, 4546 (2004).
21. P. D. Godfrey and R. D. Brown, J. Am. Chem. Soc. 120, 10724 (1998).
22. S. Chervenkov, P. Q. Wang, J. E. Braun, and H. J. Neusser, J. Chem. Phys. 121, 7169 (2004).
23. M. Meuwley, A. Mueller, and S. Leutwyler, Phys. Chem. Chem. Phys. 5, 2663 (2003).
24. (a) O. Plekan, V. Feyer, R. Richter, M. Coreno, M. de Simone, and K. C. Prince, Chem. Phys. 0301-0104 10.1016/j.chemphys.2007.02.013 334, 53 (2007); (b) L. H. Coutinho, M. G. P. Homem, R. L. Cavasso, R. R. T. Marinho, A. F. Lago, G. G. B. de Souza, and A. Naves de Brito, Braz. J. Phys. 0103-9733 10.1590/S0103-97332005000600005 35, 940 (2005); (c) H. W. Jochims, M. Schwell, J. L. Chotin, M. Clemino, F. Dulieu, H. Baumgärtel, and S. Leach, Chem. Phys. 0301-0104 10.1016/j.chemphys.2003.11.035 298, 279 (2004); (d) A. F. Lago, L. H. Coutinho, R. R. T. Marinho, A. Naves de Brito, and G. G. B. de Souza, Chem. Phys. 0301-0104 10.1016/j.chemphys.2004.06.052 307, 9 (2004); (e) R. R. T. Marinho, A. F. Lago, M. G. P. Homem, L. H. Coutinho, G. G. B. de Souza, and A. Naves de Brito, Chem. Phys. 0301-0104 10.1016/j.chemphys.2005.10.038 324, 420 (2006); (f) S. X. Tian and J. L. Yang, J. Chem. Phys. 0021-9606 10.1063/1.2721528 126, 141103 (2007); (g) H. J. Svec and D. D. Clyde, J. Chem. Eng. Data 0021-9568 10.1021/je60025a024 10, 151 (1965); (h) G. Junk and H. J. Svec, J. Am. Chem. Soc. 0002-7863 10.1021/ja00890a001 85, 839 (1963); (i) H. Svec and G. Junk, J. Am. Chem. Soc. 0002-7863 10.1021/ja00980a010 89, 790 (1967); (j) M. Schwell, H. W. Jochims, H. Baumgärtel, F. Dulieu, and S. Leach, Planet. Space Sci. 0032-0633 10.1016/j.pss.2006.05.017 54, 1073 (2006); (k) P. Tarabek, M. Bonifacic, and D. Beckert, J. Phys. Chem. A 1089-5639 10.1021/jp037779u 108, 3467 (2004); (l) A. G. Harrison and A. B. Young, J. Mass Spectrom. 40, 1173 (2005); (m) J. O'M. Bockris and S. U. M. Khan, Quantum Electrochemistry (Plenum, New York, 1979); (n) V. May and O. Khan, Charge and Energy Transfer Dynamics in Molecular Systems (Wiley-VCH, Berlin, 2000).
25. (a) M. F. Hineman, G. A. Bruker, D. F. Kelley, and E. R. Bernstein, J. Chem. Phys. 0021-9606 10.1063/1.462971 97, 3341 (1992); (b) M. F. Hineman, D. F. Kelley, and E. R. Bernstein, J. Chem. Phys. 0021-9606 10.1063/1.466053 99, 4533 (1993); (c) F. Dong, S. Heinbuch, J. J. Rocca, and E. R. Bernstein, J. Chem. Phys. 0021-9606 10.1063/1.2202314 124, 224319 (2006); (d) S. Heinbuch, F. Dong, J. J. Rocca, and E. R. Bernstein, J. Chem. Phys. 0021-9606 10.1063/1.2746036 126, 244301 (2007); (e) Y. J. Hu, H. B. Fu, and E. R. Bernstein, J. Chem. Phys. 0021-9606 10.1063/1.2378626 125, 184308 (2006); (f) Y. J. Hu, H. B. Fu, and E. R. Bernstein, J. Chem. Phys. 0021-9606 10.1063/1.2378628 125, 184309 (2006); (g) Y. J. Hu, H. B. Fu, and E. R. Bernstein, J. Chem. Phys. 0021-9606 10.1063/1.2357953 125, 154306 (2006); (h) H. B. Fu, Y. J. Hu, and E. R. Bernstein, J. Chem. Phys. 0021-9606 10.1063/1.2141951 124, 024302 (2006); (i) Y. J. Hu, H. B. Fu, and E. R. Bernstein, J. Chem. Phys. 125, 154305 (2006).
26. X. L. Cao and G. Fischer, Chem. Phys. 0301-0104 10.1016/S0301-0104(00) 00082-3 255, 195 (2000); S. G. Stepanian, I. D. Reva, E. D. Radchenko, and L. Adamowicz, J. Phys. Chem. A 1089-5639 10.1021/jp011708i 105, 10664 (2001); A. Kaczor, I. D. Reva, L. M. Proniewicz, and R. Fausto, J. Phys. Chem. A 110, 2360 (2006).
27. M. Y. Choi and R. E. Miller, J. Phys. Chem. A 1089-5639 10.1021/jp0674625 111, 2475 (2007); M. Y. Choi and R. E. Miller, J. Am. Chem. Soc. 0002-7863 10.1021/ja060741l 128, 7320 (2006); N. Portner, A. F. Vilesov, and M. Havenith, Chem. Phys. Lett. 0009-2614 10.1016/S0009-2614(01)00648-0 343, 281 (2001); A. Lindinger, E. Lugovoj, J. P. Toennies, and A. F. Vilesov, Z. Phys. Chem. 0942-9352 10.1524/zpch.2001.215.3.401 215, 401 (2001); A. Lindinger, J. P. Toennies, and A. F. Vilesov, J. Chem. Phys. 0021-9606 10.1063/1.478018 110, 1429 (1999); J. P. Toennis and A. F. Vilesov, Annu. Rev. Phys. Chem. 49, 1 (1998).
28. D. N. Shin, Y. Matsuda, and E. R. Bernstein, J. Chem. Phys. 120, 4157 (2004).
29. (a) D. F. Kelley and E. R. Bernstein, J. Phys. Chem. 0022-3654 10.1021/j100412a054 90, 5164 (1986); (b) M. R. Nimlos, D. F. Kelley, and E. R. Bernstein, J. Phys. Chem. 0022-3654 10.1021/j100339a030 93, 643 (1989); (c) M. R. Nimlos, M. A. Young, E. R. Bernstein, and D. F. Kelley, J. Phys. Chem. 0022-3654 10.1063/1.457572 91, 5268 (1989); (d) M. F. Hineman, S. K. Kim, E. R. Bernstein, and D. F. Kelley, J. Chem. Phys. 0021-9606 10.1063/1.462780 96, 4904 (1992); (e) M. Hineman, E. R. Bernstein, and D. F. Kelley, J. Chem. Phys. 0021-9606 10.1063/1.464187 98, 2516 (1993); (f) M. Hineman, E. R. Bernstein, and D. F. Kelley, J. Chem. Phys. 0021-9606 10.1063/1.468088 101, 850 (1994); (g) E. R. Bernstein, Annu. Rev. Phys. Chem. 46, 197 (1995).
30. J. R. Dwyer, J. E. Dreyer, T. J. Nibbering, and T. Elsaesser, Chem. Phys. Lett. 0009-2614 10.1016/j.cplett.2006.10.084 432, 146 (2006); T. Elsaesser, N. Huse, J. Dreyer, J. R. Dwyer, K. Heyne, and T. J. Nibbering, Chem. Phys. 0301-0104 10.1016/j.chemphys.2007.06.036 341, 175 (2007); F. O. Koller, M. Huber, T. E. Schrader, W. J. Schreier, and W. Zinth, Chem. Phys. 341, 200 (2007).
31. C. J. Chapo, J. B. Paul, R. A. Provencal, K. Roth, and R. J. Saykally, J. Am. Chem. Soc. 120, 12956 (1998).