-
1
-
-
0141707604
-
-
eds Craig NL, Craigie R, Gellert M, Lambowitz AM American Society for Microbiology, Washington, DC, pp
-
Kidwell MG, Lisch DR (2002) in Mobile DNA II, eds Craig NL, Craigie R, Gellert M, Lambowitz AM (American Society for Microbiology, Washington, DC), pp 59-89.
-
(2002)
Mobile DNA II
, pp. 59-89
-
-
Kidwell, M.G.1
Lisch, D.R.2
-
3
-
-
37549029474
-
DNA transposons and the evolution of eukaryotic genomes
-
Feschotte C, Pritham EJ (2007) DNA transposons and the evolution of eukaryotic genomes. Annu Rev Genet 41:331-368.
-
(2007)
Annu Rev Genet
, vol.41
, pp. 331-368
-
-
Feschotte, C.1
Pritham, E.J.2
-
4
-
-
0032723359
-
Integrating DNA: Transposases and retroviral integrases
-
Haren L, Ton-Hoang B, Chandler M (1999) Integrating DNA: transposases and retroviral integrases. Annu Rev Microbiol 53:245-281.
-
(1999)
Annu Rev Microbiol
, vol.53
, pp. 245-281
-
-
Haren, L.1
Ton-Hoang, B.2
Chandler, M.3
-
5
-
-
0011665465
-
-
eds Craig NL, Craigie R, Gellert M, Lambowitz AM American Society for Microbiology, Washington, DC, pp
-
Rio DC (2002) in Mobile DNA II, eds Craig NL, Craigie R, Gellert M, Lambowitz AM (American Society for Microbiology, Washington, DC), pp 484-518.
-
(2002)
Mobile DNA II
, pp. 484-518
-
-
Rio, D.C.1
-
6
-
-
0031468628
-
Modern thoughts on an ancient marinere: Function, evolution, regulation
-
Hartl DL, Lohe AR, Lozovskaya ER (1997) Modern thoughts on an ancient marinere: Function, evolution, regulation. Annu Rev Genet 31:337-358.
-
(1997)
Annu Rev Genet
, vol.31
, pp. 337-358
-
-
Hartl, D.L.1
Lohe, A.R.2
Lozovskaya, E.R.3
-
7
-
-
0018869285
-
Eucaryotic transposable genetic elements with inverted terminal repeats
-
Potter S, Truett M, Phillips M, Maher A (1980) Eucaryotic transposable genetic elements with inverted terminal repeats. Cell 20:639-647.
-
(1980)
Cell
, vol.20
, pp. 639-647
-
-
Potter, S.1
Truett, M.2
Phillips, M.3
Maher, A.4
-
8
-
-
0019449798
-
Unusual structure of the FB family of transposable elements in Drosophila
-
Truett MA, Jones RS, Potter SS (1981) Unusual structure of the FB family of transposable elements in Drosophila. Cell 24:753-763.
-
(1981)
Cell
, vol.24
, pp. 753-763
-
-
Truett, M.A.1
Jones, R.S.2
Potter, S.S.3
-
9
-
-
0021057112
-
An unusual transposon with long terminal inverted repeats in the sea urchin Strongylocentrotus purpuratus
-
Liebermann D, et al. (1983) An unusual transposon with long terminal inverted repeats in the sea urchin Strongylocentrotus purpuratus. Nature 306:342-347.
-
(1983)
Nature
, vol.306
, pp. 342-347
-
-
Liebermann, D.1
-
10
-
-
0031194273
-
Foldback transposable elements in plants
-
Rebatchouk D, Narita JO (1997) Foldback transposable elements in plants. Plant Mol Biol 34:831-835.
-
(1997)
Plant Mol Biol
, vol.34
, pp. 831-835
-
-
Rebatchouk, D.1
Narita, J.O.2
-
11
-
-
0033199912
-
Hairpin elements, the first family of foldback transposons (FTs) in Arabidopsis thaliana
-
Ade J, Belzile FJ (1999) Hairpin elements, the first family of foldback transposons (FTs) in Arabidopsis thaliana. Plant J 19:591-597.
-
(1999)
Plant J
, vol.19
, pp. 591-597
-
-
Ade, J.1
Belzile, F.J.2
-
12
-
-
0033752908
-
Sequence analysis of transposable elements in the sea squirt, Ciona intestinalis
-
Simmen MW, Bird A (2000) Sequence analysis of transposable elements in the sea squirt, Ciona intestinalis. Mol Biol Evol 17:1685-1694.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1685-1694
-
-
Simmen, M.W.1
Bird, A.2
-
13
-
-
0034532479
-
FARE, a new family of foldback transposons in Arabidopsis
-
Windsor AJ, Waddell CS (2000) FARE, a new family of foldback transposons in Arabidopsis. Genetics 156:1983-1995.
-
(2000)
Genetics
, vol.156
, pp. 1983-1995
-
-
Windsor, A.J.1
Waddell, C.S.2
-
14
-
-
0024437996
-
Complete foldback transposable elements encode a novel protein found in Drosophila melanogaster
-
Templeton NS, Potter SS (1989) Complete foldback transposable elements encode a novel protein found in Drosophila melanogaster. EMBO J 8:1887-1894.
-
(1989)
EMBO J
, vol.8
, pp. 1887-1894
-
-
Templeton, N.S.1
Potter, S.S.2
-
15
-
-
0025054212
-
Characterization of the FB-NOF transposable element of Drosophila melanogaster
-
Harden N, Ashburner M (1990) Characterization of the FB-NOF transposable element of Drosophila melanogaster. Genetics 126:387-400.
-
(1990)
Genetics
, vol.126
, pp. 387-400
-
-
Harden, N.1
Ashburner, M.2
-
16
-
-
23944436677
-
Unexpected diversity and differential success of DNA transposons in four species of entamoeba protozoans
-
Pritham EJ, Feschotte C, Wessler SR (2005) Unexpected diversity and differential success of DNA transposons in four species of entamoeba protozoans. Mol Biol Evol 22:1751-1763.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1751-1763
-
-
Pritham, E.J.1
Feschotte, C.2
Wessler, S.R.3
-
17
-
-
0344417087
-
Generation of a widespread Drosophila inversion by a transposable element
-
Cáceres M, Ranz JM, Barbadilla A, Long M, Ruiz A (1999) Generation of a widespread Drosophila inversion by a transposable element. Science 285:415-418.
-
(1999)
Science
, vol.285
, pp. 415-418
-
-
Cáceres, M.1
Ranz, J.M.2
Barbadilla, A.3
Long, M.4
Ruiz, A.5
-
18
-
-
0034883761
-
Molecular characterization of two natural hotspots in the Drosophila buzzatii genome induced by transposon insertions
-
Cáceres M, Puig M, Ruiz A (2001) Molecular characterization of two natural hotspots in the Drosophila buzzatii genome induced by transposon insertions. Genome Res 11:1353-1364.
-
(2001)
Genome Res
, vol.11
, pp. 1353-1364
-
-
Cáceres, M.1
Puig, M.2
Ruiz, A.3
-
19
-
-
0038370942
-
The foldback-like transposon Galileo is involved in the generation of two different natural chromosomal inversions of Drosophila buzzatii
-
Casals F, Caceres M, Ruiz A (2003) The foldback-like transposon Galileo is involved in the generation of two different natural chromosomal inversions of Drosophila buzzatii. Mol Biol Evol 20:674-685.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 674-685
-
-
Casals, F.1
Caceres, M.2
Ruiz, A.3
-
20
-
-
12044257173
-
Gross chromosome rearrangements mediated by transposable elements in Drosophila melanogaster
-
Lim JK, Simmons MJ (1994) Gross chromosome rearrangements mediated by transposable elements in Drosophila melanogaster. BioEssays 16:269-275.
-
(1994)
BioEssays
, vol.16
, pp. 269-275
-
-
Lim, J.K.1
Simmons, M.J.2
-
21
-
-
18844453429
-
Molecular characterization and chromosomal distribution of Galileo, Kepler and Newton, three foldback transposable elements of the Drosophila buzzatii species complex
-
Casals F, Caceres M, Manfrin MH, Gonzalez J, Ruiz A (2005) Molecular characterization and chromosomal distribution of Galileo, Kepler and Newton, three foldback transposable elements of the Drosophila buzzatii species complex. Genetics 169:2047-2059.
-
(2005)
Genetics
, vol.169
, pp. 2047-2059
-
-
Casals, F.1
Caceres, M.2
Manfrin, M.H.3
Gonzalez, J.4
Ruiz, A.5
-
22
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
Adams MD, et al. (2000) The genome sequence of Drosophila melanogaster. Science 287:2185-2195.
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.D.1
-
23
-
-
19944434180
-
Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution
-
Richards S, et al. (2005) Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution. Genome Res 15:1-18.
-
(2005)
Genome Res
, vol.15
, pp. 1-18
-
-
Richards, S.1
-
24
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
Drosophila 12 Genomes Consortium
-
Drosophila 12 Genomes Consortium (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature 480:203-218.
-
(2007)
Nature
, vol.480
, pp. 203-218
-
-
-
25
-
-
0038025344
-
Hoppel, a P-like element without introns: A P-element ancestral structure or a retrotranscription derivative?
-
Reiss D, Quesneville H, Nouaud D, Andrieu O, Anxolabehere D (2003) Hoppel, a P-like element without introns: a P-element ancestral structure or a retrotranscription derivative? Mol Biol Evol 20:869-879.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 869-879
-
-
Reiss, D.1
Quesneville, H.2
Nouaud, D.3
Andrieu, O.4
Anxolabehere, D.5
-
26
-
-
0022549191
-
Tissue specificity of Drosophila P element transposition is regulated at the level of mRNA splicing
-
Laski FA, Rio DC, Rubin GM (1986) Tissue specificity of Drosophila P element transposition is regulated at the level of mRNA splicing. Cell 44:7-19.
-
(1986)
Cell
, vol.44
, pp. 7-19
-
-
Laski, F.A.1
Rio, D.C.2
Rubin, G.M.3
-
27
-
-
0032528302
-
DNA binding by the KP repressor protein inhibits P-element transposase activity in vitro
-
Lee CC, Beall EL, Rio DC (1998) DNA binding by the KP repressor protein inhibits P-element transposase activity in vitro. EMBO J 17:4166-4174.
-
(1998)
EMBO J
, vol.17
, pp. 4166-4174
-
-
Lee, C.C.1
Beall, E.L.2
Rio, D.C.3
-
28
-
-
18744396089
-
The THAP domain of THAP1 is a large C2CH module with zinc-dependent sequence-specific DNA-binding activity
-
Clouaire T, et al. (2005) The THAP domain of THAP1 is a large C2CH module with zinc-dependent sequence-specific DNA-binding activity. Proc Natl Acad Sci USA 102:6907-6912.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 6907-6912
-
-
Clouaire, T.1
-
29
-
-
0037310275
-
The THAP domain: A novel protein motif with similarity to the DNA-binding domain of P element transposase
-
Roussigne M, et al. (2003) The THAP domain: A novel protein motif with similarity to the DNA-binding domain of P element transposase. Trends Biochem Sci 28:66-69.
-
(2003)
Trends Biochem Sci
, vol.28
, pp. 66-69
-
-
Roussigne, M.1
-
30
-
-
14544268717
-
Recurrent recruitment of the THAP DNA-binding domain and molecular domestication of the P-transposable element
-
Quesneville H, Nouaud D, Anxolabehere D (2005) Recurrent recruitment of the THAP DNA-binding domain and molecular domestication of the P-transposable element. Mol Biol Evol 22:741-746.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 741-746
-
-
Quesneville, H.1
Nouaud, D.2
Anxolabehere, D.3
-
31
-
-
0037975554
-
Molecular paleontology of transposable elements in the Drosophila melanogaster genome
-
Kapitonov VV, Jurka J (2003) Molecular paleontology of transposable elements in the Drosophila melanogaster genome. Proc Natl Acad Sci USA 100:6569-6574.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 6569-6574
-
-
Kapitonov, V.V.1
Jurka, J.2
-
32
-
-
0034809430
-
Drosophila P transposons in the human genome?
-
Hagemann S, Pinsker W (2001) Drosophila P transposons in the human genome? Mol Biol Evol 18:1979-1982.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1979-1982
-
-
Hagemann, S.1
Pinsker, W.2
-
33
-
-
0032535036
-
Double-strand break repair by interchromosomal recombination: Suppression of chromosomal translocations
-
Richardson C, Moynahan ME, Jasin M (1998) Double-strand break repair by interchromosomal recombination: suppression of chromosomal translocations. Genes Dev 12:3831-3842.
-
(1998)
Genes Dev
, vol.12
, pp. 3831-3842
-
-
Richardson, C.1
Moynahan, M.E.2
Jasin, M.3
-
34
-
-
33645227457
-
Self-synthesizing DNA transposons in eukaryotes
-
Kapitonov VV, Jurka J (2006) Self-synthesizing DNA transposons in eukaryotes. Proc Natl Acad Sci USA 103:4540-4545.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 4540-4545
-
-
Kapitonov, V.V.1
Jurka, J.2
-
35
-
-
0031949028
-
Trees within trees: Phylogeny and historical associations
-
Page RD, Charleston MA (1998) Trees within trees: Phylogeny and historical associations. Trends Ecol Evol 13:356-359.
-
(1998)
Trends Ecol Evol
, vol.13
, pp. 356-359
-
-
Page, R.D.1
Charleston, M.A.2
-
36
-
-
0344876091
-
Factors that affect the horizontal transfer of transposable elements
-
Silva JC, Loreto EL, Clark JB (2004) Factors that affect the horizontal transfer of transposable elements. Curr Issues Mol Biol 6:57-71.
-
(2004)
Curr Issues Mol Biol
, vol.6
, pp. 57-71
-
-
Silva, J.C.1
Loreto, E.L.2
Clark, J.B.3
-
37
-
-
0030851812
-
A phylogenetic perspective on P transposable element evolution in Drosophila
-
Clark JB, Kidwell MG (1997) A phylogenetic perspective on P transposable element evolution in Drosophila. Proc Natl Acad Sci USA 94:11428-11433.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 11428-11433
-
-
Clark, J.B.1
Kidwell, M.G.2
-
38
-
-
0033804947
-
Horizontal transfer and selection in the evolution of P elements
-
Silva JC, Kidwell MG (2000) Horizontal transfer and selection in the evolution of P elements. Mol Biol Evol 17:1542-1557.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1542-1557
-
-
Silva, J.C.1
Kidwell, M.G.2
-
39
-
-
34250359507
-
Principles of genome evolution in the Drosophila melanogaster species group
-
Ranz JM, et al. (2007) Principles of genome evolution in the Drosophila melanogaster species group. PLoS Biol 5:e152.
-
(2007)
PLoS Biol
, vol.5
-
-
Ranz, J.M.1
-
40
-
-
0000321861
-
-
eds Ashburner M, Carson HL, Thompson JNJ Academic, London, pp
-
Sperlich D, Pfriem P (1986) in The Genetics and Biology of Drosophila, eds Ashburner M, Carson HL, Thompson JNJ (Academic, London), pp 257-309.
-
(1986)
The Genetics and Biology of Drosophila
, pp. 257-309
-
-
Sperlich, D.1
Pfriem, P.2
-
41
-
-
0025331854
-
Evolution of the mojavensis cluster of cactophilic Drosophila with descriptions of two new species
-
Ruiz A, Heed WB, Wasserman M (1990) Evolution of the mojavensis cluster of cactophilic Drosophila with descriptions of two new species. J Hered 81:30-42.
-
(1990)
J Hered
, vol.81
, pp. 30-42
-
-
Ruiz, A.1
Heed, W.B.2
Wasserman, M.3
-
42
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
43
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
44
-
-
0034117358
-
Dotlet: Diagonal plots in a web browser
-
Junier T, Pagni M (2000) Dotlet: Diagonal plots in a web browser. Bioinformatics 16:178-179.
-
(2000)
Bioinformatics
, vol.16
, pp. 178-179
-
-
Junier, T.1
Pagni, M.2
-
45
-
-
44249090819
-
-
Hall TA (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98.
-
Hall TA (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98.
-
-
-
-
46
-
-
0034800374
-
InterProScan-an integration platform for the signature-recognition methods in InterPro
-
Zdobnov EM, Apweiler R (2001) InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17:847-848.
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
47
-
-
13444262384
-
CDD: A Conserved Domain Database for protein classification
-
Marchler-Bauer A, et al. (2005) CDD: A Conserved Domain Database for protein classification. Nucleic Acids Res 33:D192-D196.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Marchler-Bauer, A.1
-
48
-
-
0026356891
-
Predicting coiled coils from protein sequences
-
Lupas A, Van Dyke M, Stock J (1991) Predicting coiled coils from protein sequences. Science 252:1162-1164.
-
(1991)
Science
, vol.252
, pp. 1162-1164
-
-
Lupas, A.1
Van Dyke, M.2
Stock, J.3
-
49
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-552.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
50
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar S, Tamura K, Nei M (2004) MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163.
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
|