-
1
-
-
0026320866
-
The energy landscapes and motions of proteins
-
Frauenfelder H., Sligar S.G., and Wolynes P.G. The energy landscapes and motions of proteins. Science 254 (1991) 1598-1603
-
(1991)
Science
, vol.254
, pp. 1598-1603
-
-
Frauenfelder, H.1
Sligar, S.G.2
Wolynes, P.G.3
-
2
-
-
0036680063
-
Protein flexibility and drug design: how to hit a moving target
-
Carlson H. Protein flexibility and drug design: how to hit a moving target. Curr. Opin. Chem. Biol. 6 (2002) 447-452
-
(2002)
Curr. Opin. Chem. Biol.
, vol.6
, pp. 447-452
-
-
Carlson, H.1
-
3
-
-
0036285985
-
Molecular dynamics simulations of biomolecules
-
Karplus M. Molecular dynamics simulations of biomolecules. Acc. Chem. Res. 35 (2002) 321-323
-
(2002)
Acc. Chem. Res.
, vol.35
, pp. 321-323
-
-
Karplus, M.1
-
4
-
-
0035427398
-
Protein flexibility predictions using graph theory
-
Jacobs D., Rader A., Kuhn L., and Thorpe M. Protein flexibility predictions using graph theory. Proteins: Struct., Funct., Genet. 44 (2001) 150-165
-
(2001)
Proteins: Struct., Funct., Genet.
, vol.44
, pp. 150-165
-
-
Jacobs, D.1
Rader, A.2
Kuhn, L.3
Thorpe, M.4
-
5
-
-
0034663710
-
namics of proteins predicted by molecular dynamics simulations and analytical approaches: application to α-amylase inhibitor
-
Doruker P., Atilgan A.R., and Bahar I. namics of proteins predicted by molecular dynamics simulations and analytical approaches: application to α-amylase inhibitor. Proteins: Struct., Funct., Genet. 40 (2000) 512-524
-
(2000)
Proteins: Struct., Funct., Genet.
, vol.40
, pp. 512-524
-
-
Doruker, P.1
Atilgan, A.R.2
Bahar, I.3
-
6
-
-
0037022347
-
Flexibility and packing in proteins
-
Halle B. Flexibility and packing in proteins. Proc. Natl. Acad. Sci. USA 99 (2002) 1274-1279
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 1274-1279
-
-
Halle, B.1
-
7
-
-
24344503079
-
Protein flexibility and rigidity predicted from sequence
-
Schlessinger A., and Rost B. Protein flexibility and rigidity predicted from sequence. Proteins 61 (2005) 115-126
-
(2005)
Proteins
, vol.61
, pp. 115-126
-
-
Schlessinger, A.1
Rost, B.2
-
8
-
-
0034984208
-
NMR probes of molecular dynamics: overview and comparison with other techniques
-
Palmer A.G. NMR probes of molecular dynamics: overview and comparison with other techniques. Annu. Rev. Biophys. Biomol. Struct. 30 (2001) 129-155
-
(2001)
Annu. Rev. Biophys. Biomol. Struct.
, vol.30
, pp. 129-155
-
-
Palmer, A.G.1
-
9
-
-
0034919305
-
NMR methods for quantifying microsecond-to-millisecond motions in biological macromolecules
-
Palmer A.G., Kroenke C.D., and Loria J.P. NMR methods for quantifying microsecond-to-millisecond motions in biological macromolecules. Methods Enzymol. 339 (2001) 204-238
-
(2001)
Methods Enzymol.
, vol.339
, pp. 204-238
-
-
Palmer, A.G.1
Kroenke, C.D.2
Loria, J.P.3
-
10
-
-
0034723132
-
Relationships between protein structure and dynamics from a database of NMR-derived backbone order parameters
-
Goodman J.L., Pagel M.D., and Stone M.J. Relationships between protein structure and dynamics from a database of NMR-derived backbone order parameters. J. Mol. Biol. 295 (2000) 963-978
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 963-978
-
-
Goodman, J.L.1
Pagel, M.D.2
Stone, M.J.3
-
12
-
-
0028282555
-
15 N NMR relaxation
-
15 N NMR relaxation. Biochemistry 33 (1994) 5984-6003
-
(1994)
Biochemistry
, vol.33
, pp. 5984-6003
-
-
Farrow, N.A.1
Muhandiram, R.2
Singer, A.U.3
Pascal, S.M.4
Kay, C.M.5
Gish, G.6
Shoelson, S.E.7
Pawson, T.8
Forman-Kay, J.D.9
Kay, L.E.10
-
13
-
-
0024449503
-
Backbone dynamics of proteins as studied by nitrogen-15 inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease
-
Kay L.E., Torchia D.A., and Bax A. Backbone dynamics of proteins as studied by nitrogen-15 inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease. Biochemistry 28 (1989) 8972-8979
-
(1989)
Biochemistry
, vol.28
, pp. 8972-8979
-
-
Kay, L.E.1
Torchia, D.A.2
Bax, A.3
-
16
-
-
33646719091
-
Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules
-
Lipari G., and Szabo A. Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. J. Am. Chem. Soc. 104 (1982) 4546-4570
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 4546-4570
-
-
Lipari, G.1
Szabo, A.2
-
17
-
-
35748939712
-
An overview of recent developments in the interpretation and prediction of fast internal protein dynamics
-
Nodet G., and Abergel D. An overview of recent developments in the interpretation and prediction of fast internal protein dynamics. Eur. Biophys. J. 36 (2007) 985-993
-
(2007)
Eur. Biophys. J.
, vol.36
, pp. 985-993
-
-
Nodet, G.1
Abergel, D.2
-
18
-
-
0000721667
-
Relationships between the precision of high-resolution protein NMR structures, solution-order parameters and crystallographic B factors
-
Powers R., Clore G.M., Garrett D.S., and Gronenborn A.M. Relationships between the precision of high-resolution protein NMR structures, solution-order parameters and crystallographic B factors. J. Magn. Reson. B 101 (1993) 325-327
-
(1993)
J. Magn. Reson. B
, vol.101
, pp. 325-327
-
-
Powers, R.1
Clore, G.M.2
Garrett, D.S.3
Gronenborn, A.M.4
-
19
-
-
0034677658
-
Structure-fluorescence correlations in a single tryptophan mutant of carp parvalbumin: solution structure, backbone and side-chain dynamics
-
Moncrieffe M.C., Juranic N., Kemple M.D., Potter J.D., Macura S., and Prendergast F.G. Structure-fluorescence correlations in a single tryptophan mutant of carp parvalbumin: solution structure, backbone and side-chain dynamics. J. Mol. Biol. 297 (2000) 147-163
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 147-163
-
-
Moncrieffe, M.C.1
Juranic, N.2
Kemple, M.D.3
Potter, J.D.4
Macura, S.5
Prendergast, F.G.6
-
21
-
-
0030877076
-
Accuracy and precision of NMR relaxation experiments and MD simulations for characterizing protein dynamics
-
Philippopoulos M., Mandel A.M., Palmer A.G., and Lim C. Accuracy and precision of NMR relaxation experiments and MD simulations for characterizing protein dynamics. Proteins: Struct., Funct., Genet. 28 (1997) 481-493
-
(1997)
Proteins: Struct., Funct., Genet.
, vol.28
, pp. 481-493
-
-
Philippopoulos, M.1
Mandel, A.M.2
Palmer, A.G.3
Lim, C.4
-
23
-
-
0036174712
-
Continuum secondary structure captures protein flexibility
-
Anderson C., Palmer A., Brunak S., and Rost B. Continuum secondary structure captures protein flexibility. Structure 10 (2002) 175-184
-
(2002)
Structure
, vol.10
, pp. 175-184
-
-
Anderson, C.1
Palmer, A.2
Brunak, S.3
Rost, B.4
-
24
-
-
0041866668
-
2 H NMR side-chain order parameters and sequence conservation in globular proteins
-
2 H NMR side-chain order parameters and sequence conservation in globular proteins. J. Am. Chem. Soc. 125 (2003) 9004-9005
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 9004-9005
-
-
Mittermaier, A.1
Davidson, A.R.2
Kay, L.E.3
-
25
-
-
28344437280
-
Predicting internal protein dynamics from structures using coupled networks of hindered rotators
-
Abergel D., and Bodenhausen G. Predicting internal protein dynamics from structures using coupled networks of hindered rotators. J. Chem. Phys. 123 (2005) 204901
-
(2005)
J. Chem. Phys.
, vol.123
, pp. 204901
-
-
Abergel, D.1
Bodenhausen, G.2
-
26
-
-
0037202183
-
Contact model for the prediction of NMR N-H order parameters in globular proteins
-
Zhang F., and Brüschweiler R. Contact model for the prediction of NMR N-H order parameters in globular proteins. J. Am. Chem. Soc. 124 (2002) 12654-12655
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 12654-12655
-
-
Zhang, F.1
Brüschweiler, R.2
-
27
-
-
3042763969
-
Prediction of methyl-side chain dynamics in proteins
-
Ming D., and Brüschweiler R. Prediction of methyl-side chain dynamics in proteins. J. Biomol. NMR 29 (2004) 363368
-
(2004)
J. Biomol. NMR
, vol.29
, pp. 363368
-
-
Ming, D.1
Brüschweiler, R.2
-
28
-
-
33646198535
-
Reorientational contact-weighted elastic network model for the prediction of protein dynamics: comparison with NMR relaxation
-
Ming D., and Brüschweiler R. Reorientational contact-weighted elastic network model for the prediction of protein dynamics: comparison with NMR relaxation. Biophys. J. 90 (2006) 3382-3388
-
(2006)
Biophys. J.
, vol.90
, pp. 3382-3388
-
-
Ming, D.1
Brüschweiler, R.2
-
29
-
-
0033954256
-
The protein data bank
-
Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., and Bourne P.E. The protein data bank. Nucleic Acids Res. 28 (2000) 235-242
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
31
-
-
0021097529
-
How good are predictions of protein secondary structure?
-
Kabsch W., and Sander C. How good are predictions of protein secondary structure?. FEBS Lett. 155 (1983) 179-182
-
(1983)
FEBS Lett.
, vol.155
, pp. 179-182
-
-
Kabsch, W.1
Sander, C.2
-
32
-
-
0000873069
-
A method for the solution of certain non-linear problems in least squares
-
Levenberg K. A method for the solution of certain non-linear problems in least squares. Quart. J. Appl. Math. 2 (1944) 164-168
-
(1944)
Quart. J. Appl. Math.
, vol.2
, pp. 164-168
-
-
Levenberg, K.1
-
33
-
-
0028543366
-
Training feedforward networks with the Marquardt algorithm
-
Hagan M.T., and Menhaj M. Training feedforward networks with the Marquardt algorithm. IEEE Trans. Neural Networks 5 (1994) 989-993
-
(1994)
IEEE Trans. Neural Networks
, vol.5
, pp. 989-993
-
-
Hagan, M.T.1
Menhaj, M.2
-
34
-
-
33745362452
-
15 N relaxation measurements at several fields. implications for backbone order parameters
-
15 N relaxation measurements at several fields. implications for backbone order parameters. J. Am. Chem. Soc. 128 (2006) 7855-7870
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 7855-7870
-
-
Hall, J.B.1
Fushman, D.2
-
35
-
-
29444454319
-
Characterizing a partially folded intermediate of the villin headpiece domain under non-denaturing conditions: contribution of his41 to the pH-dependent stability of the N-terminal subdomain
-
Grey M.J., Tang Y., Alexov E., McKnight C.J., Raleigh D.P., and Palmer A.G. Characterizing a partially folded intermediate of the villin headpiece domain under non-denaturing conditions: contribution of his41 to the pH-dependent stability of the N-terminal subdomain. J. Mol. Biol. 355 (2006) 1078-1094
-
(2006)
J. Mol. Biol.
, vol.355
, pp. 1078-1094
-
-
Grey, M.J.1
Tang, Y.2
Alexov, E.3
McKnight, C.J.4
Raleigh, D.P.5
Palmer, A.G.6
-
36
-
-
0037472114
-
Solution structure and backbone dynamics of the holo form of the frenolicin acyl carrier protein
-
Li Q., Khosla C., Puglisi J.D., and Liu C.W. Solution structure and backbone dynamics of the holo form of the frenolicin acyl carrier protein. Biochemistry 42 (2003) 4648-4657
-
(2003)
Biochemistry
, vol.42
, pp. 4648-4657
-
-
Li, Q.1
Khosla, C.2
Puglisi, J.D.3
Liu, C.W.4
-
37
-
-
0029031765
-
15 N-NMR relaxation analysis and molecular dynamics simulation: examination of dynamic models
-
15 N-NMR relaxation analysis and molecular dynamics simulation: examination of dynamic models. Biochemistry 34 (1995) 6587-6601
-
(1995)
Biochemistry
, vol.34
, pp. 6587-6601
-
-
Yamasaki, K.1
Saito, M.2
Oobatake, M.3
Kanaya, S.4
-
38
-
-
0028941877
-
Backbone dynamics of Escherichia coli ribonuclease H: correlations with structure and function of an active enzyme
-
Mandel A.M., Akke M., and Palmer A.G. Backbone dynamics of Escherichia coli ribonuclease H: correlations with structure and function of an active enzyme. J. Mol. Biol. 246 (1995) 144-163
-
(1995)
J. Mol. Biol.
, vol.246
, pp. 144-163
-
-
Mandel, A.M.1
Akke, M.2
Palmer, A.G.3
-
39
-
-
0030445011
-
Dynamics of ribonuclease H: temperature dependence of motion on multiple time scales
-
Mandel A.M., Akke M., and Palmer A.G. Dynamics of ribonuclease H: temperature dependence of motion on multiple time scales. Biochemistry 35 (1996) 16009-16023
-
(1996)
Biochemistry
, vol.35
, pp. 16009-16023
-
-
Mandel, A.M.1
Akke, M.2
Palmer, A.G.3
-
40
-
-
0033520723
-
15 N chemical shift anisotropy in Escherichia coli ribonuclease H in solution
-
15 N chemical shift anisotropy in Escherichia coli ribonuclease H in solution. J. Am. Chem. Soc. 121 (1999) 10119-10125
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 10119-10125
-
-
Kroenke, C.D.1
Rance, M.2
Palmer, A.G.3
-
41
-
-
34848905895
-
Conformational dynamics in loop swap mutants of homologous fibronectin type III domains
-
Siggers K., Soto C., and Palmer A.G. Conformational dynamics in loop swap mutants of homologous fibronectin type III domains. Biophys. J. 93 (2007) 2447-2456
-
(2007)
Biophys. J.
, vol.93
, pp. 2447-2456
-
-
Siggers, K.1
Soto, C.2
Palmer, A.G.3
-
42
-
-
0034681284
-
Solution structure and dynamics of the DNA-binding domain of the adipocyte-transcription factor FREAC-11
-
van Dongen M.J.P., Cederberg A., Carlsson P., Enerbck S., and Wikstrm M. Solution structure and dynamics of the DNA-binding domain of the adipocyte-transcription factor FREAC-11. J. Mol. Biol. 296 (2000) 351-359
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 351-359
-
-
van Dongen, M.J.P.1
Cederberg, A.2
Carlsson, P.3
Enerbck, S.4
Wikstrm, M.5
|