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Volumn 52, Issue 9, 2008, Pages 4380-4394

A new genetic algorithm in proteomics: Feature selection for SELDI-TOF data

Author keywords

[No Author keywords available]

Indexed keywords

BIOMARKERS; CLASSIFICATION (OF INFORMATION); DECISION TREES; FEATURE EXTRACTION; MASS SPECTROMETRY; PROTEINS;

EID: 42749090969     PISSN: 01679473     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.csda.2008.02.025     Document Type: Article
Times cited : (13)

References (31)
  • 3
    • 0141855279 scopus 로고    scopus 로고
    • A comprehensive approach to the analysis of matrix-assisted laser desorption/ionization-time of flight proteomics spectra from serum samples
    • Baggerly K.A., Morris J.S., Wang J., Gold D., Xiao L.-C., and Coombes K.R. A comprehensive approach to the analysis of matrix-assisted laser desorption/ionization-time of flight proteomics spectra from serum samples. Proteomics 3 9 (2003) 1667-1672
    • (2003) Proteomics , vol.3 , Issue.9 , pp. 1667-1672
    • Baggerly, K.A.1    Morris, J.S.2    Wang, J.3    Gold, D.4    Xiao, L.-C.5    Coombes, K.R.6
  • 7
    • 34548247344 scopus 로고    scopus 로고
    • Wavelet-based procedures for proteomic mass spectrometry data processing
    • Chen S., Hong D., and Shyr Y. Wavelet-based procedures for proteomic mass spectrometry data processing. Computational Statistics and Data Analysis 52 (2007) 211-220
    • (2007) Computational Statistics and Data Analysis , vol.52 , pp. 211-220
    • Chen, S.1    Hong, D.2    Shyr, Y.3
  • 8
    • 0141615786 scopus 로고    scopus 로고
    • Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization
    • Coombes K.R., Fritsche H.A., Clarke C., Chen J.-N., Baggerly K.A., Morris J.S., Xiao L.-C., Hung M.-C., and Kuerer H.M. Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization. Clinical Chemistry 49 10 (2003) 1615-1623
    • (2003) Clinical Chemistry , vol.49 , Issue.10 , pp. 1615-1623
    • Coombes, K.R.1    Fritsche, H.A.2    Clarke, C.3    Chen, J.-N.4    Baggerly, K.A.5    Morris, J.S.6    Xiao, L.-C.7    Hung, M.-C.8    Kuerer, H.M.9
  • 9
    • 0010045457 scopus 로고    scopus 로고
    • Bayesian curve-fitting with free-knot splines
    • DiMatteo I., Genovese C.R., and Kass R.E. Bayesian curve-fitting with free-knot splines. Biometrika Trust 88 (2001) 1055-1071
    • (2001) Biometrika Trust , vol.88 , pp. 1055-1071
    • DiMatteo, I.1    Genovese, C.R.2    Kass, R.E.3
  • 12
    • 77956889087 scopus 로고
    • Reversible jump Markov Chain Monte Carlo computation and bayesian model determination
    • Green P.J. Reversible jump Markov Chain Monte Carlo computation and bayesian model determination. Biometrika 82 (1995) 711-732
    • (1995) Biometrika , vol.82 , pp. 711-732
    • Green, P.J.1
  • 14
    • 13244277613 scopus 로고    scopus 로고
    • Performance of a genetic algorithm for mass spectrometry proteomics
    • Jeffries N.O. Performance of a genetic algorithm for mass spectrometry proteomics. BMC Bioinformatics 5 180 (2004)
    • (2004) BMC Bioinformatics , vol.5 , Issue.180
    • Jeffries, N.O.1
  • 16
    • 34548229095 scopus 로고    scopus 로고
    • Variable selection in regression models using nonstandard optimisation of information criteria
    • Kapetanios G. Variable selection in regression models using nonstandard optimisation of information criteria. Computational Statistics and Data Analysis 52 (2007) 4-15
    • (2007) Computational Statistics and Data Analysis , vol.52 , pp. 4-15
    • Kapetanios, G.1
  • 17
    • 0038021028 scopus 로고    scopus 로고
    • A comparative study on feature selection and classification methods using gene expression profiles and proteomic patterns
    • Liu H., Li J., and Wong L. A comparative study on feature selection and classification methods using gene expression profiles and proteomic patterns. Genome Informatics 13 (2002) 51-60
    • (2002) Genome Informatics , vol.13 , pp. 51-60
    • Liu, H.1    Li, J.2    Wong, L.3
  • 18
    • 42749087926 scopus 로고    scopus 로고
    • ©, version 7.0.0.19920. 2004. The MathWorks, Inc
    • ©, version 7.0.0.19920. 2004. The MathWorks, Inc
  • 20
    • 3543058847 scopus 로고    scopus 로고
    • Mining mass spectra for diagnosis and biomarker discovery of cerebral accidents
    • Prados J., Kalousis A., Sanchez J.-C., Allard L., Carrette O., and Hilario M. Mining mass spectra for diagnosis and biomarker discovery of cerebral accidents. Proteomics 4 8 (2004) 2320-2332
    • (2004) Proteomics , vol.4 , Issue.8 , pp. 2320-2332
    • Prados, J.1    Kalousis, A.2    Sanchez, J.-C.3    Allard, L.4    Carrette, O.5    Hilario, M.6
  • 21
    • 0036791428 scopus 로고    scopus 로고
    • Boosted decision tree analysis of surface-enhanced laser desorption/ionization mass spectral serum profiles discriminates prostate cancer from noncancer patients
    • Qu Y., Adam B.-L., Yasui Y., Ward M.D., Xazares L.H., Schellhammer P.F., Feng Z., Semmes O.J., and Wright G.L. Boosted decision tree analysis of surface-enhanced laser desorption/ionization mass spectral serum profiles discriminates prostate cancer from noncancer patients. Clinical Chemistry 48 10 (2002) 1835-1843
    • (2002) Clinical Chemistry , vol.48 , Issue.10 , pp. 1835-1843
    • Qu, Y.1    Adam, B.-L.2    Yasui, Y.3    Ward, M.D.4    Xazares, L.H.5    Schellhammer, P.F.6    Feng, Z.7    Semmes, O.J.8    Wright, G.L.9
  • 23
    • 42749092497 scopus 로고    scopus 로고
    • R Development Core Team. 2004. R: A language and environment for statistical computing. In: R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0. URL http://www.R-project.org
    • R Development Core Team. 2004. R: A language and environment for statistical computing. In: R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0. URL http://www.R-project.org
  • 24
    • 42749087616 scopus 로고    scopus 로고
    • Reynès, C., Roche, S., Tiers, L., Sabatier, R., Jouin, P., Molinari, M., Lehmann, S., 2007. Comparison between surface and bead based MALDI profiling technologies using a single bioinformatics algorithm. Clinical Proteomics (in press)
    • Reynès, C., Roche, S., Tiers, L., Sabatier, R., Jouin, P., Molinari, M., Lehmann, S., 2007. Comparison between surface and bead based MALDI profiling technologies using a single bioinformatics algorithm. Clinical Proteomics (in press)
  • 25
    • 84864982142 scopus 로고    scopus 로고
    • The influence of different coding schemes on the computational complexity of genetic algorithms in function optimisation
    • Springer-verlag, Berlin
    • Salomon R. The influence of different coding schemes on the computational complexity of genetic algorithms in function optimisation. Proceedings of the Fourth International Conference on Parallel Problem Solving from Nature (1996), Springer-verlag, Berlin 227-235
    • (1996) Proceedings of the Fourth International Conference on Parallel Problem Solving from Nature , pp. 227-235
    • Salomon, R.1
  • 26
    • 0347181849 scopus 로고    scopus 로고
    • A data review and re-assessment of ovarian cancer serum proteomic profiling
    • Sorace J.M., and Zhan M. A data review and re-assessment of ovarian cancer serum proteomic profiling. BMC Bioinformatics 4 24 (2003)
    • (2003) BMC Bioinformatics , vol.4 , Issue.24
    • Sorace, J.M.1    Zhan, M.2
  • 27
    • 10244279272 scopus 로고    scopus 로고
    • Sample classification from protein mass spectrometry, by peak probability contrasts
    • Tibshirani R., Hastie T., Narasimhan B., Soltys S., Shi G., Koong A., and Le Q.-T. Sample classification from protein mass spectrometry, by peak probability contrasts. Bioinformatics 20 17 (2004) 3034-3044
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3034-3044
    • Tibshirani, R.1    Hastie, T.2    Narasimhan, B.3    Soltys, S.4    Shi, G.5    Koong, A.6    Le, Q.-T.7
  • 28
    • 0141631754 scopus 로고    scopus 로고
    • Protocols for disease classification from mass spectrometry data
    • Wagner M., Naik D., and Pothen A. Protocols for disease classification from mass spectrometry data. Proteomics 3 (2003) 1692-1698
    • (2003) Proteomics , vol.3 , pp. 1692-1698
    • Wagner, M.1    Naik, D.2    Pothen, A.3
  • 29
    • 51349159085 scopus 로고    scopus 로고
    • Probability estimates for multi-class classification by pairwise coupling
    • Wu T.-F., Lin C.-J., and Weng R.C. Probability estimates for multi-class classification by pairwise coupling. Journal of Machine Learning Research 5 (2004) 975-1005
    • (2004) Journal of Machine Learning Research , vol.5 , pp. 975-1005
    • Wu, T.-F.1    Lin, C.-J.2    Weng, R.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.