-
1
-
-
0019978703
-
Replication of animal mitochondria
-
D.A. Clayton Replication of animal mitochondria Cell 28 1982 693 705
-
(1982)
Cell
, vol.28
, pp. 693-705
-
-
Clayton, D.A.1
-
2
-
-
0033646639
-
Transcription and replication of mitochondrial DNA
-
D.A. Clayton Transcription and replication of mitochondrial DNA Hum. Reprod. 15 2000 11 17
-
(2000)
Hum. Reprod.
, vol.15
, pp. 11-17
-
-
Clayton, D.A.1
-
4
-
-
0034598918
-
Coupled leading- and lagging-strand synthesis of mammalian mitochondrial DNA
-
I.J. Holt H.E. Lorimer H.T. Jacobs Coupled leading- and lagging-strand synthesis of mammalian mitochondrial DNA Cell 105 2000 515 524
-
(2000)
Cell
, vol.105
, pp. 515-524
-
-
Holt, I.J.1
Lorimer, H.E.2
Jacobs, H.T.3
-
5
-
-
33646406327
-
Genesis and wanderings — Origins and migrations in asymmetrically replicating mitochondrial DNA
-
T.A. Brown D.A. Clayton Genesis and wanderings — Origins and migrations in asymmetrically replicating mitochondrial DNA Cell Cycles 5 2006 917 921
-
(2006)
Cell Cycles
, vol.5
, pp. 917-921
-
-
Brown, T.A.1
Clayton, D.A.2
-
6
-
-
42749087973
-
Replication of mammalian mitochondrial DNA occurs by strand displacement with alternative light-strand origins
-
D.A. Clayton T.A. Brown Replication of mammalian mitochondrial DNA occurs by strand displacement with alternative light-strand origins FASEB J. 20 2006 A453
-
(2006)
FASEB J.
, vol.20
, pp. A453
-
-
Clayton, D.A.1
Brown, T.A.2
-
7
-
-
33845629364
-
Alterations to the expression level of mitochondrial transcription factor A, TFAM, modify the mode of mitochondrial DNA replication in cultured human cells
-
J.L. Pohjoismäki S. Wanrooij A.K. Hyvärinen S. Goffart I.J. Holt J.N. Spelbrink H.T. Jacobs Alterations to the expression level of mitochondrial transcription factor A, TFAM, modify the mode of mitochondrial DNA replication in cultured human cells Nucleic Acids Res. 34 2006 5815 5828
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 5815-5828
-
-
Pohjoismäki, J.L.1
Wanrooij, S.2
Hyvärinen, A.K.3
Goffart, S.4
Holt, I.J.5
Spelbrink, J.N.6
Jacobs, H.T.7
-
8
-
-
33745746528
-
Possible multiple origins of replication in primate mitochondria: Alternative role of tRNA sequences
-
H. Seligmann N.M. Krishnan B.J. Rao Possible multiple origins of replication in primate mitochondria: Alternative role of tRNA sequences J. Theor. Biol. 241 2006 321 332
-
(2006)
J. Theor. Biol.
, vol.241
, pp. 321-332
-
-
Seligmann, H.1
Krishnan, N.M.2
Rao, B.J.3
-
9
-
-
33750462751
-
Mitochondrial tRNA sequences as unusual replication origins: Pathogenic implications for Homo sapiens
-
H. Seligmann N.M. Krishnan B.J. Rao Mitochondrial tRNA sequences as unusual replication origins: Pathogenic implications for Homo sapiens J. Theor. Biol. 243 2006 375 385
-
(2006)
J. Theor. Biol.
, vol.243
, pp. 375-385
-
-
Seligmann, H.1
Krishnan, N.M.2
Rao, B.J.3
-
10
-
-
33749253884
-
Mitochondrial replication origin stability and propensity of adjacent tRNA genes to form putative replication origins increase developmental stability in lizards
-
H. Seligmann N.M. Krishnan Mitochondrial replication origin stability and propensity of adjacent tRNA genes to form putative replication origins increase developmental stability in lizards J. Expt. Zool. B 306 2006 433 439
-
(2006)
J. Expt. Zool. B
, vol.306
, pp. 433-439
-
-
Seligmann, H.1
Krishnan, N.M.2
-
11
-
-
0027966917
-
Strand asymmetry in human mitochondrial mutations
-
M. Tanaka T. Ozawa Strand asymmetry in human mitochondrial mutations Genomics 22 1994 327 335
-
(1994)
Genomics
, vol.22
, pp. 327-335
-
-
Tanaka, M.1
Ozawa, T.2
-
12
-
-
0025344222
-
A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy
-
A. Frederico T.A. Kunkel B.R. Shaw A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy Biochemistry 29 1990 2532 2537
-
(1990)
Biochemistry
, vol.29
, pp. 2532-2537
-
-
Frederico, A.1
Kunkel, T.A.2
Shaw, B.R.3
-
13
-
-
33746901531
-
Kinetic costs of accuracy in translation
-
M. Ehrenberg C.G. Kurland C. Blomberg Kinetic costs of accuracy in translation T.B.L. Kirkwood R.F. Rosenberger D.J. Galas Accuracy in Molecular Processes 1986 Chapman and Hall New York 329 379
-
(1986)
, pp. 329-379
-
-
Ehrenberg, M.1
Kurland, C.G.2
Blomberg, C.3
-
14
-
-
16644398041
-
Detecting gradients of asymmetry in site-specific substitutions in mitochondrial genomes
-
N.M. Krishnan H. Seligmann S.Z. Raina D.D. Pollock Detecting gradients of asymmetry in site-specific substitutions in mitochondrial genomes DNA Cell Biol. 23 2004 707 714
-
(2004)
DNA Cell Biol.
, vol.23
, pp. 707-714
-
-
Krishnan, N.M.1
Seligmann, H.2
Raina, S.Z.3
Pollock, D.D.4
-
16
-
-
85120279635
-
-
Gibson, A. P. (2005). Comparative Analysis of Vertebrate Mitochondrial Genomes. PhD thesis, University of Manchester, UK.
-
-
-
-
17
-
-
0024615583
-
Characterization of mutant mitochondrial plasmids of Neurospora spp. that have incorporated tRNAs by reverse transcription
-
R.A. Akins R.L. Kelley A.M. Lambowitz Characterization of mutant mitochondrial plasmids of Neurospora spp. that have incorporated tRNAs by reverse transcription Mol. Cell. Biol. 9 1989 678 691
-
(1989)
Mol. Cell. Biol.
, vol.9
, pp. 678-691
-
-
Akins, R.A.1
Kelley, R.L.2
Lambowitz, A.M.3
-
18
-
-
0025343497
-
Sequence and gene organization of the chicken mitochondrial genome — a novel gene order in higher vertebrates
-
P. Desjardins R. Morais Sequence and gene organization of the chicken mitochondrial genome — a novel gene order in higher vertebrates J. Mol. Biol. 212 1990 599 634
-
(1990)
J. Mol. Biol.
, vol.212
, pp. 599-634
-
-
Desjardins, P.1
Morais, R.2
-
20
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
M. Zuker Mfold web server for nucleic acid folding and hybridization prediction Nucleic Acids Res. 31 2003 3406 3415
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
21
-
-
37049243726
-
RNA competition in RNA-DNA hybridization systems
-
J.S. Roth RNA competition in RNA-DNA hybridization systems Science 162 1968 699
-
(1968)
Science
, vol.162
, pp. 699
-
-
Roth, J.S.1
-
22
-
-
0016810733
-
Theory of RNA-DNA hybridization. 1. stoichiometry at equilibrium
-
J.M. Reiner Theory of RNA-DNA hybridization. 1. stoichiometry at equilibrium Bull. Math. Biol. 37 1975 255 268
-
(1975)
Bull. Math. Biol.
, vol.37
, pp. 255-268
-
-
Reiner, J.M.1
-
23
-
-
0026779338
-
RNA-DNA hybridization promoted by Escherichia coli Reca protein
-
D.P. Kirkpatrick B.J. Rao C.M. Radding RNA-DNA hybridization promoted by Escherichia coli Reca protein Nucleic Acids Res. 20 1995 4339 4346
-
(1995)
Nucleic Acids Res.
, vol.20
, pp. 4339-4346
-
-
Kirkpatrick, D.P.1
Rao, B.J.2
Radding, C.M.3
-
25
-
-
33646362778
-
Discovery of the hybrid helix and the first DNA-RNA hybridization
-
A. Rich Discovery of the hybrid helix and the first DNA-RNA hybridization J. Biol. Chem. 281 2006 7693 7696
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 7693-7696
-
-
Rich, A.1
-
26
-
-
0026459429
-
Stress response in Drosophila pseudobscura — DNA-RNA hybrids and transcriptional activity
-
M. Arbona J.B. Cuenca R. Defrutos Stress response in Drosophila pseudobscura — DNA-RNA hybrids and transcriptional activity Biol. Cell 75 1995 187 195
-
(1995)
Biol. Cell
, vol.75
, pp. 187-195
-
-
Arbona, M.1
Cuenca, J.B.2
Defrutos, R.3
-
27
-
-
0028209084
-
D-loops and R-loops — alternative mechanisms for the initiation of chromosome-replication in Escherichia coli
-
T. Asai T. Kogoma D-loops and R-loops — alternative mechanisms for the initiation of chromosome-replication in Escherichia coli J. Bacteriol. 17 1994 1807 1812
-
(1994)
J. Bacteriol.
, vol.17
, pp. 1807-1812
-
-
Asai, T.1
Kogoma, T.2
-
28
-
-
31844441045
-
The mechanism of DNA replication primer synthesis by RNA polymerase
-
N. Zenkin T. Naryshkina K. Kuznedelov K. Severinov The mechanism of DNA replication primer synthesis by RNA polymerase Nature 439 2006 617 620
-
(2006)
Nature
, vol.439
, pp. 617-620
-
-
Zenkin, N.1
Naryshkina, T.2
Kuznedelov, K.3
Severinov, K.4
-
29
-
-
0030952327
-
RNase mitochondrial RNA processing correctly cleaves a novel R loop at the mitochondrial DNA leading-strand origin of replication
-
D.Y. Lee D.A. Clayton RNase mitochondrial RNA processing correctly cleaves a novel R loop at the mitochondrial DNA leading-strand origin of replication Genes Dev. 11 1997 582 592
-
(1997)
Genes Dev.
, vol.11
, pp. 582-592
-
-
Lee, D.Y.1
Clayton, D.A.2
-
30
-
-
0033525023
-
R-loop in the replication origin of human mitochondrial DNA is resolved by RecG, a Holliday junction-specific helicase
-
T. Ohsato T. Muta A. Fukuoh H. Shinagawa N. Hamasaki D.C. Kang R-loop in the replication origin of human mitochondrial DNA is resolved by RecG, a Holliday junction-specific helicase Biochem. Biophys. Res. Commun. 255 1999 1 5
-
(1999)
Biochem. Biophys. Res. Commun.
, vol.255
, pp. 1-5
-
-
Ohsato, T.1
Muta, T.2
Fukuoh, A.3
Shinagawa, H.4
Hamasaki, N.5
Kang, D.C.6
-
32
-
-
0029938513
-
RNA-DNA hybrid formation at the human mitochondrial heavy-strand origin ceases at replication start sites: An implication for RNA-DNA hybrids serving as primers
-
B.J. Xu D.A. Clayton RNA-DNA hybrid formation at the human mitochondrial heavy-strand origin ceases at replication start sites: An implication for RNA-DNA hybrids serving as primers EMBO J. 15 1996 3135 3143
-
(1996)
EMBO J.
, vol.15
, pp. 3135-3143
-
-
Xu, B.J.1
Clayton, D.A.2
-
33
-
-
0030920779
-
Mitochondrial DNA maintenance in vertebrates
-
G.S. Shadel D.A. Clayton Mitochondrial DNA maintenance in vertebrates Annu. Rev. Biochem. 66 1997 409 435
-
(1997)
Annu. Rev. Biochem.
, vol.66
, pp. 409-435
-
-
Shadel, G.S.1
Clayton, D.A.2
-
34
-
-
0029796960
-
Properties of a primer RNA-DNA hybrid at the mouse mitochondrial DNA leading-strand origin of replication
-
D.Y. Lee D.A. Clayton Properties of a primer RNA-DNA hybrid at the mouse mitochondrial DNA leading-strand origin of replication J. Biol. Chem. 271 1996 24262 24269
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 24262-24269
-
-
Lee, D.Y.1
Clayton, D.A.2
-
35
-
-
0032514892
-
Initiation of mitochondrial replication by transcription and R-Loop processing
-
D.Y. Lee D.A. Clayton Initiation of mitochondrial replication by transcription and R-Loop processing J. Biol. Chem. 273 1998 30614 30621
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 30614-30621
-
-
Lee, D.Y.1
Clayton, D.A.2
-
36
-
-
0037112343
-
Biased incorporation of ribonucleotides on the mitochondrial L-strand accounts for apparent strand-asymmetric DNA replication
-
M.Y. Yang M. Bowmaker A. Reyes L. Vergani P. Angeli E. Gringeri Biased incorporation of ribonucleotides on the mitochondrial L-strand accounts for apparent strand-asymmetric DNA replication Cell 111 2002 495 505
-
(2002)
Cell
, vol.111
, pp. 495-505
-
-
Yang, M.Y.1
Bowmaker, M.2
Reyes, A.3
Vergani, L.4
Angeli, P.5
Gringeri, E.6
-
37
-
-
0030854739
-
tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
T.M. Lowe S.R. Eddy tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence NucleicAcids Res. 25 1997 955 964
-
(1997)
NucleicAcids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
38
-
-
0036318088
-
Temperature dependence of thermodynamic properties for DNA/DNA and RNA/DNA duplex formation
-
P. Wu S. Nakano N. Sugimoto Temperature dependence of thermodynamic properties for DNA/DNA and RNA/DNA duplex formation Eur. J. Biochem. 269 2002 2821 2830
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 2821-2830
-
-
Wu, P.1
Nakano, S.2
Sugimoto, N.3
-
40
-
-
23144440350
-
DINAMelt web server for nucleic acid melting prediction
-
N.R. Markham M. Zuker DINAMelt web server for nucleic acid melting prediction Nucleic Acids Res. 33 2005 W577 W581
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. W577-W581
-
-
Markham, N.R.1
Zuker, M.2
-
41
-
-
0034824470
-
Data analysis in plant physiology: are we missing the reality?
-
G.N. Amzallag Data analysis in plant physiology: are we missing the reality? Plant Cell Environm 24 2001 881 890
-
(2001)
Plant Cell Environm
, vol.24
, pp. 881-890
-
-
Amzallag, G.N.1
-
42
-
-
0028272315
-
RNA sequence analysis using covariance-models
-
S.R. Eddy R. Durbin RNA sequence analysis using covariance-models Nucleic Acids Res. 22 1994 2079 2088
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2079-2088
-
-
Eddy, S.R.1
Durbin, R.2
-
45
-
-
16544384596
-
Mechanisms and convergence of compensatory evolution in mammalian mitochondrial tRNAs
-
A.D. Kern F.A. Kondrashov Mechanisms and convergence of compensatory evolution in mammalian mitochondrial tRNAs Nature Genet. 36 2004 1207 1212
-
(2004)
Nature Genet.
, vol.36
, pp. 1207-1212
-
-
Kern, A.D.1
Kondrashov, F.A.2
-
46
-
-
26444450722
-
Prediction of pathogenic mutations in mitochondrially encoded human tRNAs
-
F.A. Kondrashov Prediction of pathogenic mutations in mitochondrially encoded human tRNAs Hum. Mol. Genet. 14 2005 2415 2419
-
(2005)
Hum. Mol. Genet.
, vol.14
, pp. 2415-2419
-
-
Kondrashov, F.A.1
-
47
-
-
1942469358
-
Aminoacylation properties of pathology-related human mitochondrial tRNA(Lys) variants
-
M. Sissler M. Helm M. Frugier R. Giege C. Florentz Aminoacylation properties of pathology-related human mitochondrial tRNA(Lys) variants RNA 10 2004 841 853
-
(2004)
RNA
, vol.10
, pp. 841-853
-
-
Sissler, M.1
Helm, M.2
Frugier, M.3
Giege, R.4
Florentz, C.5
-
48
-
-
85120259147
-
Reduced efficiency of 3′ end cleavage and CCA addition with mutant human mitochondrial tRNAs could contribute to pathogenesis
-
L. Levinger M. Morl C. Florentz Reduced efficiency of 3′ end cleavage and CCA addition with mutant human mitochondrial tRNAs could contribute to pathogenesis Biochim. Biophys. Acta-Bioenerg. 1657 2004 53
-
(2004)
Biochim. Biophys. Acta-Bioenerg.
, vol.1657
, pp. 53
-
-
Levinger, L.1
Morl, M.2
Florentz, C.3
-
49
-
-
33845214633
-
Asymptotically increasing compliance of genomes with Chargaff's second parity rules through inversions and inverted transpositions
-
G. Albrecht-Buehler Asymptotically increasing compliance of genomes with Chargaff's second parity rules through inversions and inverted transpositions Proc. Natl Acad. Sci. USA 103 2006 17828 17833
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 17828-17833
-
-
Albrecht-Buehler, G.1
-
50
-
-
1942454211
-
Mitochondrial DNA repeats constrain the life span of mammals
-
D.C. Samuels Mitochondrial DNA repeats constrain the life span of mammals TRIGS 20 2004 226 229
-
(2004)
TRIGS
, vol.20
, pp. 226-229
-
-
Samuels, D.C.1
-
51
-
-
4143081492
-
Two direct repeats cause most human mtDNA deletions
-
D.C. Samuels E.A. Schon P.F. Chinnery Two direct repeats cause most human mtDNA deletions Trends Genet. 20 2004 393 398
-
(2004)
Trends Genet.
, vol.20
, pp. 393-398
-
-
Samuels, D.C.1
Schon, E.A.2
Chinnery, P.F.3
-
52
-
-
24344443277
-
Life span is related to the free energy of mitochondrial DNA
-
D.C. Samuels Life span is related to the free energy of mitochondrial DNA Mech. Ageing Dev. 126 2005 1123 1129
-
(2005)
Mech. Ageing Dev.
, vol.126
, pp. 1123-1129
-
-
Samuels, D.C.1
-
53
-
-
33748557531
-
Direct repeats in mitochondrial DNA and mammalian lifespan
-
M. Khaidakov E.R. Siegel R.J.S. Reis Direct repeats in mitochondrial DNA and mammalian lifespan Mech. Ageing Dev. 127 2006 808 812
-
(2006)
Mech. Ageing Dev.
, vol.127
, pp. 808-812
-
-
Khaidakov, M.1
Siegel, E.R.2
Reis, R.J.S.3
-
54
-
-
0030620317
-
Developmental stability and fitness: a review
-
A.P. Moller Developmental stability and fitness: a review Am. Nat. 149 1997 916 932
-
(1997)
Am. Nat.
, vol.149
, pp. 916-932
-
-
Moller, A.P.1
-
55
-
-
0033063786
-
Developmental stability is related to fitness
-
A.P. Moller Developmental stability is related to fitness Am. Nat. 153 1999 556 560
-
(1999)
Am. Nat.
, vol.153
, pp. 556-560
-
-
Moller, A.P.1
-
56
-
-
85120257687
-
Natural selection on cloverleaf forming capacity fine-tunes the population frequency of human mitochondrial tRNA variants
-
N.M. Krishnan H. Seligmann B.J. Rao Natural selection on cloverleaf forming capacity fine-tunes the population frequency of human mitochondrial tRNA variants D. Chatterji S. Das V. Nagaraja C. Durga Rao U. Vijayraghavan 21st International tRNA Workshop, Bangalore, India December 2005 2005 22
-
(2005)
, pp. 22
-
-
Krishnan, N.M.1
Seligmann, H.2
Rao, B.J.3
-
57
-
-
0019444843
-
tRNA punctuation model of RNA processing in human mitochondria
-
D. Ojala J. Montoya G. Attardi tRNA punctuation model of RNA processing in human mitochondria Nature 290 1981 470 474
-
(1981)
Nature
, vol.290
, pp. 470-474
-
-
Ojala, D.1
Montoya, J.2
Attardi, G.3
-
58
-
-
0033025011
-
Gene contents and organization of a mitochondrial DNA segment of the squid, Loligo bleekeri
-
J. Sasuga S. Yokobori M. Kaifu T. Ueda K. Nishikawa K. Watanabe Gene contents and organization of a mitochondrial DNA segment of the squid, Loligo bleekeri J. Mol. Evol. 48 1999 692 702
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 692-702
-
-
Sasuga, J.1
Yokobori, S.2
Kaifu, M.3
Ueda, T.4
Nishikawa, K.5
Watanabe, K.6
-
59
-
-
26944500840
-
Replication of mitochondrial DNA occurs by strand displacement with alternative light-strand origins, not via a strand-coupled mechanism
-
T.A. Brown C. Cecconi A.N. Tkachuk C. Bustamante D.A. Clayton Replication of mitochondrial DNA occurs by strand displacement with alternative light-strand origins, not via a strand-coupled mechanism Genes Dev. 19 2005 2466 2476
-
(2005)
Genes Dev.
, vol.19
, pp. 2466-2476
-
-
Brown, T.A.1
Cecconi, C.2
Tkachuk, A.N.3
Bustamante, C.4
Clayton, D.A.5
|