Novel Reversible Biotinylated Probe for the Selective Enrichment of Phosphorylated Peptides from Complex Mixtures

Journal of the American Society for Mass Spectrometry

Volumn 19, Issue 5, 2008, Pages 741-750

  Jalili, Pegah R ^a   Ball, Haydn L ^a  

^a UNIVERSITY OF TEXAS AT DALLAS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONCENTRATION (PROCESS); ENZYME ACTIVITY; FUNCTIONAL GROUPS; MIXTURES; PHOSPHATES; PHOSPHORYLATION;

COMPLEX MIXTURES; PHOSPHORYLATED PEPTIDES; REVERSIBLE BIOTINYLATED PROBE;

PEPTIDES;

AVIDIN; BIOTIN; CARBONYL DERIVATIVE; CYSTEINE; PHOSPHATE; PHOSPHOPEPTIDE; THIOL DERIVATIVE;

AMINO ACID SEQUENCE; ARTICLE; BIOTINYLATION; CHEMICAL ENGINEERING; COVALENT BOND; DERIVATIZATION; DRUG MIXTURE; IONIZATION; MASS SPECTROMETRY; MICHAEL ADDITION; MOLECULAR PROBE; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN PHOSPHORYLATION; PROTEIN PURIFICATION; REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY;

BIOTINYLATION; COMPLEX MIXTURES; MOLECULAR PROBE TECHNIQUES; PEPTIDE MAPPING; PEPTIDES; PHOSPHORYLATION; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION;

EID: 42749086358     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jasms.2008.02.004     Document Type: Article

References (30)

1. Aebersold R., Watts J.D., Morrison H.D., and Bures E. Determination of the Site of Tyrosine Phosphorylation at the Low Picomole Level by Automated Solid-Phase Sequence Snalysis. Anal. Biochem. 199 (1991) 51-60
2. Girault J.A., Hemmings H.C.J., Williams K.R., Nairn A.C., and Greengard P. Phosphorylation of DARPP-32, a Dopamine- and cAMP-Regulated Phosphoprotein, by Casein Kinase II. J. Biol. Chem. 264 (1989) 21748-21759
3. Annan R.S., and Carr S.A. The Essential Role of Mass Spectrometry in Characterizing Protein Structure: Mapping Post-Translational Modifications. J. Protein Chem. 16 (1997) 391-402
4. Qin J., and Chait T. Identification and Characterization of Post-Translational Modifications of Proteins by MALDI Ion Trap Mass Spectrometry. Anal. Chem. 69 (1997) 4002-4009
5. Yi Z., Luo M., Mandarino L.J., Reyna S.M., Carroll C.A., and Weintraub S.T. Quantification of Phosphorylation of Insulin Receptor Substrate-1 by HPLC-ESI-MS/MS. J. Am. Soc. Mass Spectrom. 17 (2006) 562-567
6. Trinidad C.J., Specht G.C., Thalhammer A., Schoepfer R., and Burlingame L.A. Comprehensive Identification of Phosphorylation Sites in Post-Synaptic Density Preparations. Mol. Cell. Proteom. 5 (2006) 914-922
7. Lim K.B., and Kassel D.B. Phosphopeptides Enrichment Using On-Line Two-Dimensional Strong Cation Exchange Followed by Reversed-Phase Liquid Chromatography/Mass Spectrometry. Anal. Biochem. 354 (2006) 213-219
8. Muszynska G., Dobrowolska G., Medin A., Ekamn P., and Porath J.O. Model Studies on Iron (III) Ion Affinity Chromatography II. Interaction of Immobilized Iron (III) Ions with Phosphorylated Amino Acids, Peptides, and Proteins. J. Chromatogr. 604 (1992) 19-28
9. Sparbier K., Koch S., Kessler I., Wenzel T., and Kostrzewa M. Selective Isolation of Glycoproteins and Glycopeptides for MALDI-TOF MS Detection Supported by Magnetic Particles. J. Biomol. Tech. 16 (2005) 407-413
10. Dass C. Principles and Practice of Biological Mass Spectrometry (2001), John Wiley and Sons, Inc, New York 203-207
11. Nuwaysir L.M., and Stults J.T. Electrospray Ionization Mass Spectrometry of Phosphopeptides Isolated by On-Line Immobilized Metal-Ion Affinity Chromatography. J. Am. Soc. Mass Spectrom. 4 (1993) 662-669
12. Posewitz M., and Tempst P. Immobilized Gallium (III) Affinity Chromatography of Phosphopeptides. Anal. Chem. 71 (1999) 2883-2892
13. Stensballe A., Andersen S., and Jensen O.N. Characterization of Phosphoproteins from Electrophoretic Gels by Nanoscale Fe (III) Affinity Chromatography with Off-Line Mass Spectrometry Analysis. Proteomics 1 (2001) 207-222
14. Brill M.L., Salomon R.A., Ficarro B.S., Mukherji M., Stettler-Gill M., and Peters C.E. Robust Phosphoproteomic Profiling of Tyrosine Phosphorylation Sites from Human T Cells Using Immobilized Metal Affinity Chromatography and Tandem Mass Spectrometry. Anal. Chem. 76 (2004) 2763-2772
15. Dawoud A.A., Sarvaiya H.A., and Lazar I.M. Microfluidic Platform with Mass Spectrometry Detection for the Analysis of Phosphoproteins. Electrophoresis 24 (2007) 4645-4660
16. Larsen M.R., Thingholm T.E., Jensen O.N., Roepstorff P., and Jorgensen T.J. Highly Selective Enrichment of Phosphorylated Peptides from Peptide Mixtures Using Titanium Dioxide Microcolumns. Mol. Cell. Proteom. 4 (2005) 873-886
17. Shih-Shin L., Makamba H., Shang-Yu H., and Shu-Hui C. Nanotitanium Dioxide Composites for the Enrichment of Phosphopeptides. J. Chromatogr. A 1116 (2006) 38-45
18. Kyong K.H., and Hakansson K. Selective Zirconium Dioxide-Based Enrichment of Phosphorylated Peptides for Mass Spectrometric Analysis. Anal. Chem. 78 (2006) 1743-1749
19. Schroeder M.J., Shabanowitz J., Schwartz J.C., Hunt D.F., and Coon J.J. A Neutral Loss Activation Method for Improved Phosphopeptide Sequence Analysis by Quadrupole Ion Trap Mass Spectrometry. Anal. Chem. 76 (2004) 3590-3598
20. Yu L.R., Zhu Z., Chan K.C., Issaq H.J., Dimitrov D.S., and Veenstra T.D. Improved Titanium Dioxide Enrichment of Phosphopeptides from HeLa Cells and High Confident Phosphopeptide Identification by Cross-Validation of MS/MS and MS/MS/MS Sspectra. J. Proteome Res. 11 (2007) 4150-4162
21. Wang Y., Chen W., Wu J., Guo Y., and Xia X. Highly Efficient and Selective Enrichment of Phosphopeptides Using Porous Anodic Alumina Membrane for MALDI-TOF MS Analysis. J. Am. Soc. Mass Spectrom. 18 (2007) 1387-1395
22. 2 Core-Shell Microspheres as Affinity Probes for Selective Enrichment and Direct Determination of Phosphopeptides Using Matrix-Assisted Laser Desorption Ionization Mass Spectrometry. J. Proteome Res. 11 (2007) 4498-4510
23. Xu X., Deng C., Gao M., Yu W., Yang P., and Zhang X. Synthesis of Magnetic Microspheres with Immobilized Metal Ions for Enrichment and Direct Determination of Phosphopeptides by Matrix-Assisted Laser Desorption Ionization Mass Spectrometry. Adv. Mater. 18 (2006) 3289-3293
24. Amoresano A., Monti G., Cirulli C., and Marino G. Selective Detection and Identification of Phosphopeptides by Dansyl MS/MS/MS Fragmentation. Rapid Commun. Mass Spectrom. 20 (2006) 1400-1404
25. Klemm C., Schröder S., Glückmann M., Beyermann M., and Krause E. Derivatization of Phosphorylated Peptides with S- and N-Nucleophiles for Enhanced Ionization Efficiency in Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry. Rapid Commun. Mass Spectrom. 18 (2004) 2697-2705
26. Knight Z.A., Schilling B., Row R.H., Kenski D.M., Gibson B.W., and Shokat K.M. Phosphospecific Proteolysis for Mapping Sites of Protein Phosphorylation. Nat. Biotechnol. 21 (2003) 1047-1054
27. Brittain S.M., Ficarro S.B., Brock A., and Peters E.C. Enrichment and Analysis of Peptide Subsets Using Fluorous Affinity Tags and Mass Spectrometry. Nat. Biotechnol. 23 (2005) 463-468
28. Adamczyk M., Gebler J.C., and Wu J. Selective Analysis of Phosphopeptides Within a Protein Mixture by Chemical Modification, Reversible Biotinylation, and Mass Spectrometry. Rapid Commun. Mass Spectrom. 15 (2001) 1481-1488
29. Jalili P.R., Sharma D., and Ball H.L. Enhancement of Ionization Efficiency and Selective Enrichment of Phosphorylated Peptides from Complex Protein Mixtures Using a Reversible Polyhistidine Tag. J. Am. Soc. Mass Spectrom. 18 (2007) 1007-1017
30. Carr A.S., Huddleston J.M., and Annan S.R. Selective Detection and Sequencing of Phosphopeptides at the Femtomole Level by Mass Spectrometry. Anal. Biochem. 239 (1996) 180-192