A phylogeny of the oil bee tribe Ctenoplectrini (Hymenoptera: Anthophila) based on mitochondrial and nuclear data: Evidence for Early Eocene divergence and repeated out-of-Africa dispersal

Molecular Phylogenetics and Evolution

Volumn 47, Issue 2, 2008, Pages 799-811

  Schaefer, Hanno ^a   Renner, Susanne S ^a  

^a UNIVERSITY OF MUNICH   (Germany)

Author keywords

Biogeography; CAD; cox 1; cox 1 pseudogenes; Ctenoplectra; Ctenoplectrina; cytb; Ef1 ; Molecular clocks

Indexed keywords

CYTOCHROME C OXIDASE;

AFRICA; ANIMAL; ARTICLE; BEE; CELL NUCLEUS; ENZYMOLOGY; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; MITOCHONDRION; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; PHYLOGENY; POPULATION MIGRATION; PSEUDOGENE; STATISTICAL MODEL; TIME;

AFRICA; ANIMAL MIGRATION; ANIMALS; BASE SEQUENCE; BEES; CELL NUCLEUS; CLONING, MOLECULAR; ELECTRON TRANSPORT COMPLEX IV; GEOGRAPHY; LIKELIHOOD FUNCTIONS; MITOCHONDRIA; PHYLOGENY; PSEUDOGENES; TIME FACTORS; VARIATION (GENETICS);

APIDAE; APOIDEA; CTENOPLECTRA; CTENOPLECTRINI; CUCUMIS SATIVUS; CUCURBITACEAE; EUCERINI; HYMENOPTERA;

EID: 42749084565     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2008.01.030     Document Type: Article

References (65)

1. Alexander B.A., and Michener C.D. Phylogenetic studies of the families of short-tongued bees (Hymenoptera: Apoidea). Univ. Kansas Sci. Bull. 55 (1995) 377-424
2. Anjos-Silva, E.J., Engel, M., Andena, S.R., 2007. Phylogeny of the cleptoparasitic bee genus Exaerete (Hymenoptera: Apidae). Apidologie 38 (available online at http://dx.doi.org/10.1051/apido:2007023).
3. Baker D.B. Taxonomic and phylogenetic problems in Old World eucerine bees, with special reference to the genus Tarsalia Morawitz, 1895. J. Nat. Hist. 32 (1998) 823-860
4. Braby A.F., Pierce N.E., and Vila R. Phylogeny and historical biogeography of the subtribe Aporiina (Lepidoptera: Pieridae): implications for the origin of Australian butterflies. Biol. J. Linn. Soc. 90 (2007) 413-440
5. Bucklin A., Astthorsson O.S., Gislason A., Allen L.D., Smolenack S.B., and Wiebe P.H. Population genetic variation of Calanus finmarchicus in Icelandic waters: preliminary evidence of genetic differences between Atlantic and Arctic populations. ICES J. Mar. Sci. 57 (2000) 1592-1604
6. Cameron S.A., Hines H.M., and Williams P.H. A comprehensive phylogeny of the bumble bees (Bombus). Biol. J. Linn. Soc. 91 (2007) 161-188
7. Danforth B.N., and Ji S. Elongation Factor-1 occurs as two copies in bees: implications for phylogenetic analysis of EF-1 sequences in insects. Mol. Biol. Evol. 15 (1998) 225-235
8. Danforth B.N., Fang J., Sipes S., Brady S.G., and Almeida E. Phylogeny and Molecular Systematics of Bees (Hymenoptera: Apoidea) (2004), Cornell University, Ithaca, NY. Available from: http://www.entomology.cornell.edu/BeePhylogeny/
9. Danforth B.N., Fang J., and Sipes S. Analysis of family-level relationships in bees (Hymenoptera: Apiformes) using 28S and two previously unexplored nuclear genes: CAD and RNA polymerase II. Mol. Phylogenet. Evol. 39 (2006) 358-372
10. Danforth B.N., Sipes S., Fang J., and Brady S.G. The history of early bee diversification based on five genes plus morphology. Proc. Natl. Acad. Sci. USA 103 (2006) 15118-15123
11. Eardley C.D. A revision of the Afrotropical Ctenoplectrini (Hymenoptera: Apidae). Afr. Plant Protection 9 (2003) 5-18
12. Emery C. Über den Ursprung der dulotischen, parasitischen und myrmekophilen Ameisen. Biol. Centralbl. 29 (1909) 352-362
13. Engel M.S. The first fossil Euglossa and phylogeny of the orchid bees. Am. Mus. Nov. 3272 (1999) 1-14
14. Engel M.S. A new interpretation of the oldest fossil bee (Hymenoptera: Apidae). Am. Mus. Nov. 3296 (2000) 11 8 figures
15. Engel M.S. Classification of the bee tribe Augochlorini (Hymenoptera: Halictidae). Bull. Am. Mus. Nat. Hist. 250 (2000) 1-89
16. Engel M.S. A monograph of the Baltic amber bees and the evolution of the Apoidea (Hymenoptera). Bull. Am. Mus. Nat. Hist. 259 (2001) 1-192
17. Engel M.S. Family-group names for bees. Am. Mus. Nov. 3476 (2005) 1-33
18. Engel M.S. An Eocene bee in Rovno amber, Ukraine (Hymenoptera: Megachilidae). Am. Mus. Nov. 3506 (2006) 12 2 figures
19. Engel M.S. A new ctenoplectrine bee from Sulawesi (Hymenoptera: Apidae). Acta Entomol. Slov. 15 1 (2007) 31-46
20. Engel M.S., Brooks R.W., and Yanega D. New genera and subgenera of augochlorine bees (Hymenoptera: Halictidae). Nat. Hist. Mus. Univ. Kansas Sci. Papers 5 (1997) 1-22
21. Farris J.S., Källersjö M., Kluge A.G., and Bult C. Testing significance of incongruence. Cladistics 10 (1994) 315-319
22. Fuller S., Schwarz M., and Tierney S. Phylogenetics of the allodapine genus Braunsapis: historical biogeography and long-range dispersal over water. J. Biogeogr. 32 (2005) 2135-2144
23. In: Gradstein F.M., Ogg J.G., and Smith A.G. (Eds). A Geologic Time Scale (2004), Cambridge University Press, New York
24. Grimaldi D., and Engel M.S. Evolution of the Insects (2005), Cambridge University Press, New York 755 pp
25. Hebert P.D.N., Stoeckle M.Y., Zemlak T.S., and Francis C.M. Identification of birds through DNA barcodes. PLoS Biol. 2 (2004) e312
26. Hebert P.D.N., Penton E.H., Burns J.M., Janzen D.H., and Hallwachs W. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc. Natl. Acad. Sci. (USA) 101 (2004) 14812-14817
27. Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17 (2001) 754-755
28. Jacobs B.F. Palaeobotanical studies from tropical Africa: relevance to the evolution of forest, woodland and savannah biomes. Phil. Trans. R. Soc. Lond. B 359 (2004) 1573-1583
29. Jacobs H.T., and Grimes B. Complete nucleotide sequences of the nuclear pseudogenes for cytochrome oxidase subunit I and the large mitochondrial ribosomal RNA in the sea urchin Strongylocentrotus purpuratus. J. Mol. Biol. 187 (1986) 509-527
30. Jordal B.H., and Hewitt G.M. The origin and radiation of Macaronesian beetles breeding in Euphorbia: the relative importance of multiple data partitions and population sampling. Syst. Biol. 53 (2004) 711-734
31. Kawakita A., Sota T., Ito M., Ascher J.C., Tanaka H., Kato M., and Roubik D.W. Phylogeny, historical biogeography, and character evolution in bumble bees (Bombus: apidae) based on simultaneous analysis of three nuclear gene sequences. Mol. Phylogenet. Evol. 31 (2004) 799-804
32. Leys R., Cooper S.J.B., and Schwarz M.P. Molecular phylogeny and historical biogeography of the large carpenter bees, genus Xylocopa (Hymenoptera: Apidae). Biol. J. Linn. Soc. 77 (2002) 249-266
33. Lunt D.H., Zhang D.X., Szymura J.M., and Hewitt G.M. The insect cytochrome oxidase I gene: evolutionary patterns and conserved primers for phylogenetic studies. Insect Mol. Biol. 5 (1996) 153-165
34. Maddison D.R., and Maddison W.P. MacClade 4.0 (2003), Sinauer Associates, Sunderland, MA
35. Michener C.D. Comparative external morphology, phylogeny, and a classification of the bees. Bull. Am. Mus. Nat. Hist. 82 (1944) 151-326
36. Michener C.D. The Bees of the World. second ed. (2007), John Hopkins University Press, Baltimore 953 pp
37. Michener C.D., and Greenberg L. Ctenoplectridae and the origin of long-tongued bees. Zool. J. Linn. Soc. 69 (1980) 183-205
38. Moulton J.K., and Wiegmann B.M. Evolution and phylogenetic utility of CAD (rudimentary) among Mesozoic-aged Eremoneuran Diptera (Insecta). Mol. Phylogenet. Evol. 31 (2004) 363-378
39. Pamilo P., Viljakainen L., and Vihavainen A. Exceptionally high density of NUMTs in the honeybee genome. Mol. Biol. Evol. 24 (2007) 1340-1346
40. Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
41. Rasmussen C., and Cameron S.A. A molecular phylogeny of the Old World stingless bees (Hymenoptera: Apidae: Meliponini) and the non-monophyly of the large genus Trigona. Syst. Entomol. 32 (2007) 26-39
42. Renner S.S., and Meyer K. Melastomeae come full circle: biogeographic reconstruction and molecular clock dating. Evolution 55 (2001) 1315-1324
43. Roig-Alsina A., and Michener C.D. Studies of the phylogeny and classification of long-tongued bees (Hymenoptera: Apoidea) 4. Univ. Kansas Sci. Bull. 55 (1993) 123-173
44. Ronquist, F., 1996. DIVA version 1.1. Computer program and manual available by anonymous FTP from Uppsala University (ftp.uu.se or ftp.systbot.uu.se).
45. Ronquist F. Dispersal-vicariance analysis: A new approach to the quantification of historical biogeography. Syst. Biol. 46 (1997) 195-203
46. Rozen J.G. The relationships of the bee subfamily Ctenoplectrinae as revealed by its biology and mature larva (Apoidea: Melittidae). J. Kansas Entomol. Soc. 51 (1978) 637-652
47. Rozen J.G. Pupal descriptions of some cleptoparasitic bees (Apidae), with a preliminary generic key to pupae of parasitic bees. Am. Mus. Nov. 3289 (2000) 1-19
48. Rozen J.G. A taxonomic key to mature larvae of cleptoparasitic bees. Am. Mus. Nov 3309 (2001) 1-27
49. Rozen J.G. Ovarian formula, mature oocyte, and egg index of the bee Ctenoplectra (Hymenoptera: Apoidea: Apidae). J. Kansas Entomol. Soc. 76 (2003) 640-642
50. Sanderson M.J. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol. Biol. Evol. 19 (2002) 101-109
51. Schwarz M.P., Tierney S.M., Cooper S.J.B., and Bull N.J. Molecular phylogenetics of the allodapine bee genus Braunsapis: A-T bias and heterogeneous substitution parameters. Mol. Phylogenet. Evol. 32 (2004) 110-122
52. Schwarz M.P., Fuller S., Tierney S.M., and Cooper S.J.B. Molecular phylogenetics of the Exoneurine allodapine bees reveal an ancient and puzzling dispersal from Africa to Australia. Syst. Biol. 55 (2006) 31-45
53. Silveira F.A. Phylogenetic relationships of the Exomalopsini and Ancylini. Univ. Kansas Sci. Bull. 55 (1993) 163-173
54. Silveira F.A. The mouthparts of Ancyla and the reduction of the labiomaxillary complex among long-tongued bees. Entomol. Scand. 24 (1993) 293-300
55. Simon C., Buckley T.R., Frati F., Stewart J.B., and Beckenbach A.T. Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA. Ann. Rev. Ecol. Evol. Syst. 37 (2006) 545-579
56. Smith A.G., Smith D.G., and Funell M. Atlas of mesozoic and cenozoic coastlines (1994), Cambridge University Press, Cambridge 109 pp
57. Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22 21 (2006) 2688-2690
58. Straka J., and Bogusch P. Phylogeny of the bees of the family Apidae based on larval characters with focus on the origin of cleptoparasitism (Hymenoptera: Apiformes). Syst. Entomol. 32 4 (2007) 700-711 10.1111/j.1365-3113.2007.00394.x
59. Suzuki Y., Glazko G.V., and Nei M. Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proc. Natl. Acad. Sci. (USA) 99 (2002) 16138-16143
60. Swofford D.L. PAUP*. Phylogenetic Analysis using Parsimony (*and other methods). Version 4 (2002), Sinauer Associates, Sunderland, MA
61. Thorne J.L., Kishino H., and Painter I.S. Estimating the rate of evolution of the rate of molecular evolution. Mol. Biol. Evol. 15 (1998) 1647-1657
62. Thorne J.L., and Kishino H. Divergence time and evolutionary rate estimation with multilocus data. Syst. Biol. 51 (2002) 689-702
63. Vogel S. Ölblumen und ölsammelnde Bienen. Dritte Folge. Momordica, Thladiantha und die Ctenoplectridae. Trop. u. Subtrop. Pflanzenwelt 73 (1990) 1-186
64. Williams S.T., and Knowlton N. Mitochondrial pseudogenes are pervasive and often insidious in the snapping shrimp genus Alpheus. Mol. Biol. Evol. 18 (2001) 1484-1493
65. Zwickl, D.J., 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence data sets under the maximum likelihood criterion. Ph.D. dissertation, The University of Texas at Austin.