메뉴 건너뛰기




Volumn 71, Issue 3, 2008, Pages 1123-1133

Intrinsically disordered protein from a pathogenic mesophile Mycobacterium tuberculosis adopts structured conformation at high temperature

Author keywords

Biotin binding; Disordered; Spectroscopy; Unfolded

Indexed keywords

AMINO ACID; BACTERIAL PROTEIN; BIOTIN; CONGO RED; HISTIDINE; RV3221C PROTEIN; THIOFLAVINE; TRIFLUOROETHANOL; UNCLASSIFIED DRUG;

EID: 42449154662     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.21798     Document Type: Article
Times cited : (17)

References (48)
  • 1
    • 25144472591 scopus 로고    scopus 로고
    • Showing your ID: Intrinsic disorder as an ID for recognition regulation cell signaling
    • Uversky VN, Oldfield CJ, Dunker AK. Showing your ID: intrinsic disorder as an ID for recognition regulation cell signaling. J Mol Recognit 2005;18:343-384.
    • (2005) J Mol Recognit , vol.18 , pp. 343-384
    • Uversky, V.N.1    Oldfield, C.J.2    Dunker, A.K.3
  • 2
    • 13844255387 scopus 로고    scopus 로고
    • Natively unfolded proteins
    • Fink AL. Natively unfolded proteins. Curr Opin Struct Biol 2005;15:35-41.
    • (2005) Curr Opin Struct Biol , vol.15 , pp. 35-41
    • Fink, A.L.1
  • 3
    • 0034669882 scopus 로고    scopus 로고
    • Why are "natively unfolded" proteins unstructured under physiologic conditions?
    • Uversky VN, Gillespie JR, Fink AL. Why are "natively unfolded" proteins unstructured under physiologic conditions? Proteins 2000;41:415-427.
    • (2000) Proteins , vol.41 , pp. 415-427
    • Uversky, V.N.1    Gillespie, J.R.2    Fink, A.L.3
  • 5
    • 0032749078 scopus 로고    scopus 로고
    • Intrinsically unstructured proteins: Re-assessing the protein structure-function paradigm
    • Wright PE, Dyson HJ. Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm. J Mol Biol 1999;293:321-331.
    • (1999) J Mol Biol , vol.293 , pp. 321-331
    • Wright, P.E.1    Dyson, H.J.2
  • 6
    • 0036153571 scopus 로고    scopus 로고
    • What does it mean to be natively unfolded?
    • Uversky VN. What does it mean to be natively unfolded? Eur J Biochem 2002;269:2-12.
    • (2002) Eur J Biochem , vol.269 , pp. 2-12
    • Uversky, V.N.1
  • 7
    • 0036128797 scopus 로고    scopus 로고
    • Natively unfolded proteins: A point where biology waits for physics
    • Uversky VN. Natively unfolded proteins: a point where biology waits for physics. Protein Sci 2002;11:739-756.
    • (2002) Protein Sci , vol.11 , pp. 739-756
    • Uversky, V.N.1
  • 8
    • 0033200063 scopus 로고    scopus 로고
    • Protein misfolding evolution disease
    • Dobson CM. Protein misfolding evolution disease. Trends Biochem Sci 1999;24:329-332.
    • (1999) Trends Biochem Sci , vol.24 , pp. 329-332
    • Dobson, C.M.1
  • 10
    • 0035002037 scopus 로고    scopus 로고
    • ProDDO: A database of disordered proteins from the Protein Data Bank PDB
    • Sim KL, Uchida T, Miyano S. ProDDO: a database of disordered proteins from the Protein Data Bank PDB. Bioinformatics 2001;17:379-380.
    • (2001) Bioinformatics , vol.17 , pp. 379-380
    • Sim, K.L.1    Uchida, T.2    Miyano, S.3
  • 12
    • 0035941305 scopus 로고    scopus 로고
    • Metal-triggered structural transformations, aggregation, and fibrillation of human α-synuclein
    • Uversky VN, Li J, Fink AL. Metal-triggered structural transformations, aggregation, and fibrillation of human α-synuclein. J Biol Chem 2001;276:43495-43498.
    • (2001) J Biol Chem , vol.276 , pp. 43495-43498
    • Uversky, V.N.1    Li, J.2    Fink, A.L.3
  • 13
    • 0022156464 scopus 로고
    • Neuronal origin of a cerebral amyloid: Neurofibrillary tangles of Alzheimer's disease contain the same protein as the amyloid of plaque cores blood vessels
    • Masters CL, Multhaup G, Simms G, Pottgiesser J, Martins RN, Beyreuther K. Neuronal origin of a cerebral amyloid: neurofibrillary tangles of Alzheimer's disease contain the same protein as the amyloid of plaque cores blood vessels. EMBO J 1985;4:2757-2763.
    • (1985) EMBO J , vol.4 , pp. 2757-2763
    • Masters, C.L.1    Multhaup, G.2    Simms, G.3    Pottgiesser, J.4    Martins, R.N.5    Beyreuther, K.6
  • 15
    • 0025904444 scopus 로고    scopus 로고
    • Lee YM, Balin BJ, Otvos L, Trojanowski JQ. A68: a major subunit of paired helical filaments derivatized forms of normal Tau. Science 1991;251:675-678.
    • Lee YM, Balin BJ, Otvos L, Trojanowski JQ. A68: a major subunit of paired helical filaments derivatized forms of normal Tau. Science 1991;251:675-678.
  • 17
  • 18
    • 1542379603 scopus 로고    scopus 로고
    • The YefM antitoxin defines a family of natively unfolded proteins: Implications as a novel antibacterial target
    • Cherny I, Gazit E. The YefM antitoxin defines a family of natively unfolded proteins: implications as a novel antibacterial target. J Biol Chem 2004;279:8252-8261.
    • (2004) J Biol Chem , vol.279 , pp. 8252-8261
    • Cherny, I.1    Gazit, E.2
  • 19
    • 0032508046 scopus 로고    scopus 로고
    • Cole ST, Brosch R, Parkhill J, Garnier T, Churcher C, Harris D, Gordon SV, Eiglmeier K, Gas S, Barry CE 3rd, Tekaia F, Badcock K, Basham D, Brown D, Chillingworth T, Connor R, Davies R, Devlin K, Feltwell T, Gentles S, Hamlin N, Holroyd S, Hornsby T, Jagels K, Krogh A, McLean J, Moule S, Murphy L, Oliver K, Osborne J, Quail MA, Rajream MA, Rogers J, Rutter S, Seeger K, Skelton J, Squares R, Squares S, Sulston JE, Taylor K, Whitehead S, Barrell BG. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 1998;393:537-544.
    • Cole ST, Brosch R, Parkhill J, Garnier T, Churcher C, Harris D, Gordon SV, Eiglmeier K, Gas S, Barry CE 3rd, Tekaia F, Badcock K, Basham D, Brown D, Chillingworth T, Connor R, Davies R, Devlin K, Feltwell T, Gentles S, Hamlin N, Holroyd S, Hornsby T, Jagels K, Krogh A, McLean J, Moule S, Murphy L, Oliver K, Osborne J, Quail MA, Rajream MA, Rogers J, Rutter S, Seeger K, Skelton J, Squares R, Squares S, Sulston JE, Taylor K, Whitehead S, Barrell BG. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 1998;393:537-544.
  • 20
    • 0035931926 scopus 로고    scopus 로고
    • Cole ST, Eiglmeier K, Parkhill J, James KD, Thomson NR, Wheeler PR, Honore N, Garnier T, Churcher C, Harris D, Mungall K, Basham D, Brown D, Chillingworth T, Connor R, Davies RM, Devlin K, Duthoy S, Feltwell T, Fraser A, Hamlin N, Holroyd S, Hornsby T, Jagels K, Lacroix C, Maclean J, Moule S, Murphy L, Oliver K, Quail MA, Rajream MA, Rutherford KM, Rutter S, Seeger K, Simon S, Simmonds M, Skelton J, Squares R, Squares S, Stevens K, Taylor K, Whitehead S, Woodward JR, Barrell BG. Massive gene decay in the leprosy bacillus. Nature 2001;409:1007-1011.
    • Cole ST, Eiglmeier K, Parkhill J, James KD, Thomson NR, Wheeler PR, Honore N, Garnier T, Churcher C, Harris D, Mungall K, Basham D, Brown D, Chillingworth T, Connor R, Davies RM, Devlin K, Duthoy S, Feltwell T, Fraser A, Hamlin N, Holroyd S, Hornsby T, Jagels K, Lacroix C, Maclean J, Moule S, Murphy L, Oliver K, Quail MA, Rajream MA, Rutherford KM, Rutter S, Seeger K, Simon S, Simmonds M, Skelton J, Squares R, Squares S, Stevens K, Taylor K, Whitehead S, Woodward JR, Barrell BG. Massive gene decay in the leprosy bacillus. Nature 2001;409:1007-1011.
  • 21
    • 0034607801 scopus 로고    scopus 로고
    • Identification of the [Fe-S] cluster-binding residues of Escherichia coli biotin synthase
    • McIver L, Baxter RL, Campopiano DJ. Identification of the [Fe-S] cluster-binding residues of Escherichia coli biotin synthase. J Biol Chem 2000;275:13888-13894.
    • (2000) J Biol Chem , vol.275 , pp. 13888-13894
    • McIver, L.1    Baxter, R.L.2    Campopiano, D.J.3
  • 22
    • 0034718114 scopus 로고    scopus 로고
    • Pyruvate carboxylase from Mycobacterium smegmatis: Stabilization rapid purification molecular biochemical characterization regulation of the cellular level
    • Mukhopadhyay B, Purwantini E. Pyruvate carboxylase from Mycobacterium smegmatis: stabilization rapid purification molecular biochemical characterization regulation of the cellular level. Biochim Biophys Acta 2000;1475:191-206.
    • (2000) Biochim Biophys Acta , vol.1475 , pp. 191-206
    • Mukhopadhyay, B.1    Purwantini, E.2
  • 23
    • 0033966029 scopus 로고    scopus 로고
    • Comparative evaluation of low-molecular-mass proteins from Mycobacterium tuberculosis identifies members of the ESAT-6 family as immunodominant T-cell antigens
    • Skjot RL, Oettinger T, Rosenkrs I, Ravn P, Brock I, Jacobsen S, Andersen P. Comparative evaluation of low-molecular-mass proteins from Mycobacterium tuberculosis identifies members of the ESAT-6 family as immunodominant T-cell antigens. Infect Immun 2000;68:214-220.
    • (2000) Infect Immun , vol.68 , pp. 214-220
    • Skjot, R.L.1    Oettinger, T.2    Rosenkrs, I.3    Ravn, P.4    Brock, I.5    Jacobsen, S.6    Andersen, P.7
  • 24
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • Devereux J, Haeberli P, Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 1984;121(Pt 1):387-395.
    • (1984) Nucleic Acids Res , vol.121 , Issue.PART 1 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 25
    • 0003437299 scopus 로고    scopus 로고
    • version 36, distributed by the author. Department of Genome Sciences, University of Washington: Seattle, WA;
    • Felsenstein J. PHYLIP (Phylogeny Inference Package) version 36, distributed by the author. Department of Genome Sciences, University of Washington: Seattle, WA; 2005.
    • (2005) PHYLIP (Phylogeny Inference Package)
    • Felsenstein, J.1
  • 26
    • 0032444658 scopus 로고    scopus 로고
    • Trifluoroethanol colleagues: Cosolvents come of age. Recent studies with peptides and proteins
    • Buck M. Trifluoroethanol colleagues: cosolvents come of age. Recent studies with peptides and proteins. Q Rev Biophys 1998;31:297-355.
    • (1998) Q Rev Biophys , vol.31 , pp. 297-355
    • Buck, M.1
  • 27
    • 0033595582 scopus 로고    scopus 로고
    • Clustering of fluorine-substituted alcohols as a factor responsible for their marked effects on proteins and peptides
    • Hong D-P, Hoshino M, Kuboi R, Goto Y. Clustering of fluorine-substituted alcohols as a factor responsible for their marked effects on proteins and peptides. J Am Chem Soc 1999;121:8427-8433.
    • (1999) J Am Chem Soc , vol.121 , pp. 8427-8433
    • Hong, D.-P.1    Hoshino, M.2    Kuboi, R.3    Goto, Y.4
  • 28
    • 0028174643 scopus 로고
    • Quantitative determination of helical propensities from trifluoroethanol titration curves
    • Jasanoff A, Fersht A. Quantitative determination of helical propensities from trifluoroethanol titration curves. Biochemistry 1994;33:2129-2135.
    • (1994) Biochemistry , vol.33 , pp. 2129-2135
    • Jasanoff, A.1    Fersht, A.2
  • 29
    • 0026514355 scopus 로고
    • Spectrofluorimetric assessment of the surface hydrophobicity of proteins
    • Cardamone M, Puri NK. Spectrofluorimetric assessment of the surface hydrophobicity of proteins. Biochem J 1992;282:589-593.
    • (1992) Biochem J , vol.282 , pp. 589-593
    • Cardamone, M.1    Puri, N.K.2
  • 31
    • 0033135193 scopus 로고    scopus 로고
    • 1-Anilino-8-naphthalene sulfonate as a protein conformational tightening agent
    • Matulis D, Baumann CG, Bloomfield VA, Lovrien RE. 1-Anilino-8-naphthalene sulfonate as a protein conformational tightening agent. Biopolymers 1999;49:451-458.
    • (1999) Biopolymers , vol.49 , pp. 451-458
    • Matulis, D.1    Baumann, C.G.2    Bloomfield, V.A.3    Lovrien, R.E.4
  • 32
    • 0035815664 scopus 로고    scopus 로고
    • Evidence for a partially folded intermediate in α-synuclein fibril formation
    • Uversky VN, Li J, Fink AL. Evidence for a partially folded intermediate in α-synuclein fibril formation. J Biol Chem 2001;276:10737-10744.
    • (2001) J Biol Chem , vol.276 , pp. 10737-10744
    • Uversky, V.N.1    Li, J.2    Fink, A.L.3
  • 34
    • 0034044314 scopus 로고    scopus 로고
    • The PSIPRED protein structure prediction server
    • McGuffin LJ, Bryson K, Jones DT. The PSIPRED protein structure prediction server. Bioinformatics 2000;16:404-405.
    • (2000) Bioinformatics , vol.16 , pp. 404-405
    • McGuffin, L.J.1    Bryson, K.2    Jones, D.T.3
  • 36
    • 0023008334 scopus 로고
    • Vibrational spectroscopy and conformation of peptides polypeptides proteins
    • Krimm S, Bekar J. Vibrational spectroscopy and conformation of peptides polypeptides proteins. Adv Protein Chem 1986;38:181-364.
    • (1986) Adv Protein Chem , vol.38 , pp. 181-364
    • Krimm, S.1    Bekar, J.2
  • 37
    • 0002693020 scopus 로고
    • Physical basis of the stability of the folded conformations of proteins
    • Creighton TE, editor, W. H. Freeman: New York;
    • Privalov PL. Physical basis of the stability of the folded conformations of proteins. In: Creighton TE, editor. Protein folding. W. H. Freeman: New York; 1992. pp 83-126.
    • (1992) Protein folding , pp. 83-126
    • Privalov, P.L.1
  • 38
    • 0026511652 scopus 로고
    • Contribution of hydration non-covalent interactions to the heat capacity effect on protein unfolding
    • Privalov PL, Makhatadze GI. Contribution of hydration non-covalent interactions to the heat capacity effect on protein unfolding. J Mol Biol 1992;224:715-723.
    • (1992) J Mol Biol , vol.224 , pp. 715-723
    • Privalov, P.L.1    Makhatadze, G.I.2
  • 39
    • 0027250627 scopus 로고
    • Contribution of hydration to protein folding thermodynamics. II. The entropy Gibbs energy of hydration
    • Privalov PL, Makhatadze GI. Contribution of hydration to protein folding thermodynamics. II. The entropy Gibbs energy of hydration. J Mol Biol 1993;232:660-679.
    • (1993) J Mol Biol , vol.232 , pp. 660-679
    • Privalov, P.L.1    Makhatadze, G.I.2
  • 40
    • 34547516861 scopus 로고    scopus 로고
    • Hydrophobic association of α-helices, steric dewetting, and enthalpic barriers to protein folding
    • MacCallum JL, Moghaddam MS, Chan HS, Tieleman DP. Hydrophobic association of α-helices, steric dewetting, and enthalpic barriers to protein folding. Proc Natl Acad Sci USA 2007;104:6206-6210.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 6206-6210
    • MacCallum, J.L.1    Moghaddam, M.S.2    Chan, H.S.3    Tieleman, D.P.4
  • 41
    • 0035815664 scopus 로고    scopus 로고
    • Evidence for a partially folded intermediate in α-synuclein fibril formation
    • Uversky VN, Li J, Fink AL. Evidence for a partially folded intermediate in α-synuclein fibril formation. J Biol Chem 2001;276:10737-10744.
    • (2001) J Biol Chem , vol.276 , pp. 10737-10744
    • Uversky, V.N.1    Li, J.2    Fink, A.L.3
  • 42
    • 0030801746 scopus 로고    scopus 로고
    • The structure of amyloid fibrils by electron microscopy and X-ray diffraction
    • Sunde M, Blake C. The structure of amyloid fibrils by electron microscopy and X-ray diffraction. Adv Protein Chem 1997;50:123-159.
    • (1997) Adv Protein Chem , vol.50 , pp. 123-159
    • Sunde, M.1    Blake, C.2
  • 43
    • 0037166276 scopus 로고    scopus 로고
    • Amyloid-like fibril formation in an all β-barrel protein involves the formation of partially structured intermediate(s)
    • Srisailam S, Wang HM, Kumar TK, Rajalingam D, Sivaraja V, Sheu HS, Chang YC, Yu C. Amyloid-like fibril formation in an all β-barrel protein involves the formation of partially structured intermediate(s). J Biol Chem 2002;277:19027-19036.
    • (2002) J Biol Chem , vol.277 , pp. 19027-19036
    • Srisailam, S.1    Wang, H.M.2    Kumar, T.K.3    Rajalingam, D.4    Sivaraja, V.5    Sheu, H.S.6    Chang, Y.C.7    Yu, C.8
  • 44
    • 33845918172 scopus 로고    scopus 로고
    • Heat shock proteins 70 and 90 inhibit early stages of amyloid β-(1-42) aggregation in vitro
    • Evans CG, Wisén S, Gestwicki JE. Heat shock proteins 70 and 90 inhibit early stages of amyloid β-(1-42) aggregation in vitro. J Biol Chem 2006;281:33182-33191.
    • (2006) J Biol Chem , vol.281 , pp. 33182-33191
    • Evans, C.G.1    Wisén, S.2    Gestwicki, J.E.3
  • 46
    • 10244221154 scopus 로고    scopus 로고
    • Comparative analysis of protein unfoldedness in human housekeeping non-housekeeping proteins
    • Pandey N, Ganapathi M, Kumar K, Dasgupta D, Das Sutar SK, Dash D. Comparative analysis of protein unfoldedness in human housekeeping non-housekeeping proteins. Bioinformatics 2004;20:2904-2910.
    • (2004) Bioinformatics , vol.20 , pp. 2904-2910
    • Pandey, N.1    Ganapathi, M.2    Kumar, K.3    Dasgupta, D.4    Das Sutar, S.K.5    Dash, D.6
  • 47
    • 0024970988 scopus 로고
    • Conformational stability and mechanism of folding of ribonuclease T1
    • Thomson JA, Shirley BA, Grimsley GR, Pace CN. Conformational stability and mechanism of folding of ribonuclease T1. J Biol Chem 1989;264:11614-11620.
    • (1989) J Biol Chem , vol.264 , pp. 11614-11620
    • Thomson, J.A.1    Shirley, B.A.2    Grimsley, G.R.3    Pace, C.N.4
  • 48
    • 0033573999 scopus 로고    scopus 로고
    • Structure, thermostability, and conformational flexibility of hen egg-white lysozyme dissolved in glycerol
    • Knubovets T, Osterhout JJ, Connolly PJ, Klibanov AM. Structure, thermostability, and conformational flexibility of hen egg-white lysozyme dissolved in glycerol. Proc Natl Acad Sci USA 1999;96:262-267.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 262-267
    • Knubovets, T.1    Osterhout, J.J.2    Connolly, P.J.3    Klibanov, A.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.