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Volumn 95, Issue 1, 2008, Pages 43-50

Paleobotany, evidence, and molecular dating: An example from the Nymphaeales

Author keywords

Angiosperm; Molecular clock; Nonparametric rate smoothing; Nymphaeales; Penalized likelihood

Indexed keywords

MAGNOLIOPHYTA; NYMPHAEALES;

EID: 42449147942     PISSN: 00266493     EISSN: None     Source Type: Journal    
DOI: 10.3417/2007063     Document Type: Article
Times cited : (14)

References (44)
  • 1
    • 0038518200 scopus 로고    scopus 로고
    • Dating the tree of life
    • Benton, M. J. & F. J. Ayala. 2003. Dating the tree of life. Science 300: 1698-1700.
    • (2003) Science , vol.300 , pp. 1698-1700
    • Benton, M.J.1    Ayala, F.J.2
  • 2
    • 33745855120 scopus 로고    scopus 로고
    • Am I a bony fish?
    • Brummitt, R. K. 2006. Am I a bony fish? Taxon 55: 268-269.
    • (2006) Taxon , vol.55 , pp. 268-269
    • Brummitt, R.K.1
  • 3
    • 0000031660 scopus 로고
    • Phylogenetics of seed plants: An analysis of nucleotide sequences from the plastid gene rbcL
    • Chase, M. W., D. E. Soltis & R. G. Olmstead, et al. 1993. Phylogenetics of seed plants: An analysis of nucleotide sequences from the plastid gene rbcL. Ann. Missouri Bot. Gard. 80: 528-580.
    • (1993) Ann. Missouri Bot. Gard , vol.80 , pp. 528-580
    • Chase, M.W.1    Soltis, D.E.2    Olmstead, R.G.3
  • 4
    • 21044456647 scopus 로고    scopus 로고
    • Fossil evidence and phylogeny: The age of major angiosperm clades based on mesofossil and macrofossil evidence from Cretaceous deposits
    • Crepet, W. L., K. C. Nixon & M. A. Gandolfo. 2004. Fossil evidence and phylogeny: The age of major angiosperm clades based on mesofossil and macrofossil evidence from Cretaceous deposits. Amer. J. Bot. 91: 1666-1682.
    • (2004) Amer. J. Bot , vol.91 , pp. 1666-1682
    • Crepet, W.L.1    Nixon, K.C.2    Gandolfo, M.A.3
  • 6
    • 0242659207 scopus 로고    scopus 로고
    • Floral evolution in Chloranthaceae: Implications of a morphological phylogenetic analysis
    • Doyle, J. A., H. Eklund & P. S. Herendeen. 2003. Floral evolution in Chloranthaceae: Implications of a morphological phylogenetic analysis. Int. J. Pl. Sci. 164(suppl.): S365-S382.
    • (2003) Int. J. Pl. Sci , vol.164 , Issue.SUPPL.
    • Doyle, J.A.1    Eklund, H.2    Herendeen, P.S.3
  • 7
    • 1642272540 scopus 로고    scopus 로고
    • Morphological phylogenetic analysis of living and fossil Chloranthaceae
    • Eklund, H., J. A. Doyle & P. S. Herendeen. 2004. Morphological phylogenetic analysis of living and fossil Chloranthaceae. Int. J. Pl. Sci. 165: 107-151.
    • (2004) Int. J. Pl. Sci , vol.165 , pp. 107-151
    • Eklund, H.1    Doyle, J.A.2    Herendeen, P.S.3
  • 8
    • 0002224909 scopus 로고
    • Punctuated equilibria: An alternative to phyletic gradualism
    • Pp, T. J. M. Schopf editor, Freeman Cooper, San Francisco
    • Eldredge, N. & S. J. Gould. 1972. Punctuated equilibria: An alternative to phyletic gradualism. Pp. 82-115 in T. J. M. Schopf (editor), Models in Paleobiology. Freeman Cooper, San Francisco.
    • (1972) Models in Paleobiology , pp. 82-115
    • Eldredge, N.1    Gould, S.J.2
  • 9
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27: 401-410.
    • (1978) Syst. Zool , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 10
    • 0002493052 scopus 로고    scopus 로고
    • Fossil history of magnoliid angiosperms
    • Pp, K. Iwatsuki & P. R. Raven editors, Springer, Tokyo
    • Friis, E. M. 1997. Fossil history of magnoliid angiosperms. Pp. 121-156 in K. Iwatsuki & P. R. Raven (editors), Evolution and Diversification of Land Plants. Springer, Tokyo.
    • (1997) Evolution and Diversification of Land Plants , pp. 121-156
    • Friis, E.M.1
  • 11
    • 0002335272 scopus 로고
    • Angiosperm floral structures from the Early Cretaceous of Portugal
    • _, K. R. Pedersen & P. R. Crane. 1994. Angiosperm floral structures from the Early Cretaceous of Portugal. Pl. Syst. Evol. 8: 31-49.
    • (1994) Pl. Syst. Evol , vol.8 , pp. 31-49
    • Friis, E.M.1    Pedersen, K.R.2    Crane, P.R.3
  • 12
    • 0032795196 scopus 로고    scopus 로고
    • Early angiosperm diversification: The diversity of pollen associated with angiosperm reproductive structures in Early Cretaceous floras from Portugal
    • _ & _. 1999. Early angiosperm diversification: The diversity of pollen associated with angiosperm reproductive structures in Early Cretaceous floras from Portugal. Ann. Missouri Bot. Gard. 86: 259-296.
    • (1999) Ann. Missouri Bot. Gard , vol.86 , pp. 259-296
    • Friis, E.M.1    Pedersen, K.R.2    Crane, P.R.3
  • 13
    • 0035868707 scopus 로고    scopus 로고
    • Fossil evidence of water lilies (Nymphaeales) in the Early Cretaceous
    • _ & _. 2001. Fossil evidence of water lilies (Nymphaeales) in the Early Cretaceous. Nature 410: 357-360.
    • (2001) Nature , vol.410 , pp. 357-360
    • Friis, E.M.1    Pedersen, K.R.2    Crane, P.R.3
  • 14
    • 2542591689 scopus 로고    scopus 로고
    • Cretaceous flowers of Nymphaeaceae and implications for complex insect entrapment pollination mechanisms in early angiosperms
    • Gandolfo, M. A., K. C. Nixon & W. L. Crepet. 2004. Cretaceous flowers of Nymphaeaceae and implications for complex insect entrapment pollination mechanisms in early angiosperms. Proc. Natl. Acad. Sci. U.S.A. 101: 8056-8060.
    • (2004) Proc. Natl. Acad. Sci. U.S.A , vol.101 , pp. 8056-8060
    • Gandolfo, M.A.1    Nixon, K.C.2    Crepet, W.L.3
  • 16
    • 1642554676 scopus 로고    scopus 로고
    • Reading the entrails of chickens: Molecular limescales of evolution and the illusion of precision
    • Graur, D. & W. Martin. 2004. Reading the entrails of chickens: Molecular limescales of evolution and the illusion of precision. Trends Genet. 20: 80-86.
    • (2004) Trends Genet , vol.20 , pp. 80-86
    • Graur, D.1    Martin, W.2
  • 17
    • 0003934790 scopus 로고
    • Translated by D. Dwight & R. Zangerl. Univ. of Illinois Press, Urbana
    • Hennig, W. 1966. Phylogenetic Systematics. Translated by D. Dwight & R. Zangerl. Univ. of Illinois Press, Urbana.
    • (1966) Phylogenetic Systematics
    • Hennig, W.1
  • 18
    • 33947693374 scopus 로고    scopus 로고
    • Neglecting evolution is bad taxonomy
    • Hörandl, E. 2007. Neglecting evolution is bad taxonomy. Taxon 56: 1-5.
    • (2007) Taxon , vol.56 , pp. 1-5
    • Hörandl, E.1
  • 19
    • 0032773940 scopus 로고    scopus 로고
    • Homoplasy increases phylogenetic structure
    • Källersjö, M., V. A. Albert & J. S. Farris. 1999. Homoplasy increases phylogenetic structure. Cladistics 15: 91-93.
    • (1999) Cladistics , vol.15 , pp. 91-93
    • Källersjö, M.1    Albert, V.A.2    Farris, J.S.3
  • 20
    • 0014680905 scopus 로고
    • Non-Darwinian evolution
    • King, J. L. & T. H. Jukes. 1969. Non-Darwinian evolution. Science 164: 788-798.
    • (1969) Science , vol.164 , pp. 788-798
    • King, J.L.1    Jukes, T.H.2
  • 21
    • 0035103260 scopus 로고    scopus 로고
    • Performance of a divergence time estimation method under a probabilistic model of rate evolution
    • Kishino, H., J. L. Thorne & W. J. Bruno. 2001. Performance of a divergence time estimation method under a probabilistic model of rate evolution. Molec. Biol. Evol. 18: 352-361.
    • (2001) Molec. Biol. Evol , vol.18 , pp. 352-361
    • Kishino, H.1    Thorne, J.L.2    Bruno, W.J.3
  • 22
    • 0032770486 scopus 로고    scopus 로고
    • Phylogeny, classification, and floral evolution of water lilies (Nymphaeales): A synthesis of non-molecular, rbcL, matK, and 18S rDNA data
    • Les, D. H., E. L. Schneider, D. J. Padgett, M. Zanis, D. E. Soltis & P. S. Soltis. 1999. Phylogeny, classification, and floral evolution of water lilies (Nymphaeales): A synthesis of non-molecular, rbcL, matK, and 18S rDNA data. Syst. Bot. 24: 28-46.
    • (1999) Syst. Bot , vol.24 , pp. 28-46
    • Les, D.H.1    Schneider, E.L.2    Padgett, D.J.3    Zanis, M.4    Soltis, D.E.5    Soltis, P.S.6
  • 23
    • 0037423796 scopus 로고    scopus 로고
    • The effects of Cenozoic global change on squirrel phylogeny
    • Mercer, J. M. & V. L. Roth. 2003. The effects of Cenozoic global change on squirrel phylogeny. Science 299: 1568-1572.
    • (2003) Science , vol.299 , pp. 1568-1572
    • Mercer, J.M.1    Roth, V.L.2
  • 24
    • 0029756250 scopus 로고    scopus 로고
    • Paleobotany in cladistics and cladistics in paleobotany: Enlightenment and uncertainty
    • Nixon, K. C. 1996. Paleobotany in cladistics and cladistics in paleobotany: Enlightenment and uncertainty. Rev. Palaeobot. Palynol. 90: 361-373.
    • (1996) Rev. Palaeobot. Palynol , vol.90 , pp. 361-373
    • Nixon, K.C.1
  • 25
    • 0033504552 scopus 로고    scopus 로고
    • The parsimony ratchet, a new method for rapid parsimony analysis
    • _. 1999. The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics 15: 407-414.
    • (1999) Cladistics , vol.15 , pp. 407-414
    • Nixon, K.C.1
  • 26
    • 0030378088 scopus 로고    scopus 로고
    • On consensus, collapsibility and clade concordance
    • _ & J. M. Carpenter. 1996. On consensus, collapsibility and clade concordance. Cladistics 12: 305-321.
    • (1996) Cladistics , vol.12 , pp. 305-321
    • Nixon, K.C.1    Carpenter, J.M.2
  • 27
    • 0002272008 scopus 로고
    • Extinction and the origin of species
    • Pp, M. J. Novacek & Q. D. Wheeler editors, Columbia Univ. Press, New York
    • _ & Q. D. Wheeler. 1992. Extinction and the origin of species. Pp. 119-143 in M. J. Novacek & Q. D. Wheeler (editors), Extinction and Phylogeny. Columbia Univ. Press, New York.
    • (1992) Extinction and Phylogeny , pp. 119-143
    • Nixon, K.C.1    Carpenter, J.M.2    Wheeler, Q.D.3
  • 28
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molec. Biol. Evol. 4: 406-425.
    • (1987) Molec. Biol. Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 29
    • 0030773749 scopus 로고    scopus 로고
    • A nonparametric approach to estimating divergence times in the absence of rate constancy
    • Sanderson, M. J. 1997. A nonparametric approach to estimating divergence times in the absence of rate constancy. Molec. Biol. Evol. 14: 1218-1232.
    • (1997) Molec. Biol. Evol , vol.14 , pp. 1218-1232
    • Sanderson, M.J.1
  • 30
    • 0001002014 scopus 로고    scopus 로고
    • Estimating rate and time in molecular phylogenies: Beyond the molecular clock?
    • Pp, D. E. Soltis, P. S. Soltis & J. J. Doyle editors, Kluwer, Boston
    • _. 1998. Estimating rate and time in molecular phylogenies: Beyond the molecular clock? Pp. 242-264 in D. E. Soltis, P. S. Soltis & J. J. Doyle (editors), Molecular Systematics of Plants II, DNA Sequencing. Kluwer, Boston.
    • (1998) Molecular Systematics of Plants II, DNA Sequencing , pp. 242-264
    • Sanderson, M.J.1
  • 31
    • 0036135468 scopus 로고    scopus 로고
    • Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach
    • _. 2002. Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach. Molec. Biol. Evol. 19: 101-109.
    • (2002) Molec. Biol. Evol , vol.19 , pp. 101-109
    • Sanderson, M.J.1
  • 32
    • 0037314098 scopus 로고    scopus 로고
    • Inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics
    • r8s
    • _. 2003. r8s: Inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 19: 301-302.
    • (2003) , vol.19 , pp. 301-302
    • Sanderson, M.J.1
  • 34
    • 0000215283 scopus 로고    scopus 로고
    • Success of parsimony in the four-taxon case: Long-branch repulsion by likelihood in the Farris zone
    • Siddall, M. E. 1998. Success of parsimony in the four-taxon case: Long-branch repulsion by likelihood in the Farris zone. Cladistics 14: 209-220.
    • (1998) Cladistics , vol.14 , pp. 209-220
    • Siddall, M.E.1
  • 37
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin & D. G. Higgins. 1997. The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 24: 4876-4882.
    • (1997) Nucl. Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 38
    • 0036803223 scopus 로고    scopus 로고
    • Divergence time and evolutionary rate estimation with multilocus data
    • Thome, J. L. & H. Kishino. 2002. Divergence time and evolutionary rate estimation with multilocus data. Syst. Biol. 51: 689-702.
    • (2002) Syst. Biol , vol.51 , pp. 689-702
    • Thome, J.L.1    Kishino, H.2
  • 39
    • 0031741182 scopus 로고    scopus 로고
    • Estimating the rate of evolution of the rate of molecular evolution
    • _ & I. S. Painter. 1998. Estimating the rate of evolution of the rate of molecular evolution. Molec. Biol. Evol. 15: 1647-1657.
    • (1998) Molec. Biol. Evol , vol.15 , pp. 1647-1657
    • Thome, J.L.1    Kishino, H.2    Painter, I.S.3
  • 41
    • 31844442939 scopus 로고    scopus 로고
    • Divergence times and historical biogeography of Nymphaeales
    • Yoo, M.-J., C. D. Bell, P. S. Soltis & D. E. Soltis. 2005. Divergence times and historical biogeography of Nymphaeales. Syst. Bot. 30: 693-704.
    • (2005) Syst. Bot , vol.30 , pp. 693-704
    • Yoo, M.-J.1    Bell, C.D.2    Soltis, P.S.3    Soltis, D.E.4
  • 42
    • 0242490829 scopus 로고    scopus 로고
    • The deepest splits in Chloranthaceae as resolved by chloroplast sequences
    • Zhang, L.-B. & S. Renner. 2003. The deepest splits in Chloranthaceae as resolved by chloroplast sequences. Int. J. Pl. Sci. 164(5 suppl.): S383-S392.
    • (2003) Int. J. Pl. Sci , vol.164 , Issue.5 SUPPL.
    • Zhang, L.-B.1    Renner, S.2
  • 43
    • 0002331493 scopus 로고
    • Molecular disease, evolution, and genetic heterogeneity
    • Pp, M. Kasha & B. Pullman editors, Academic Press, New York
    • Zuckerkandl, E. & L. Pauling. 1962. Molecular disease, evolution, and genetic heterogeneity. Pp. 189-225 in M. Kasha & B. Pullman (editors), Horizons in Biochemistry. Academic Press, New York.
    • (1962) Horizons in Biochemistry , pp. 189-225
    • Zuckerkandl, E.1    Pauling, L.2
  • 44
    • 0001895697 scopus 로고
    • Evolutionary divergence and convergence in proteins
    • Pp, V. Bryson & H. J. Vogel editors, Academic Press, New York
    • _ & _. 1965. Evolutionary divergence and convergence in proteins. Pp. 97-166 in V. Bryson & H. J. Vogel (editors), Evolving Genes and Proteins. Academic Press, New York.
    • (1965) Evolving Genes and Proteins , pp. 97-166
    • Zuckerkandl, E.1    Pauling, L.2


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