메뉴 건너뛰기




Volumn 73, Issue 2, 2008, Pages 185-194

Real-time PCR for detection and quantification of the biocontrol agent Trichoderma atroviride strain SC1 in soil

Author keywords

Monitoring; Real time PCR; Risk assessment; Trichoderma atroviride

Indexed keywords

CHITINASE; ENDOCHITINASE; UNCLASSIFIED DRUG;

EID: 42449133704     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2008.02.004     Document Type: Article
Times cited : (64)

References (46)
  • 1
    • 0032736381 scopus 로고    scopus 로고
    • Precise detection and tracing of Trichoderma hamatum 382 in compost-amended potting mixes by using molecular markers
    • Abbasi P.A., Miller S.A., Meulia T., Hoitink H.A.J., and Ki J.M. Precise detection and tracing of Trichoderma hamatum 382 in compost-amended potting mixes by using molecular markers. Appl. Environ. Microbiol. 65 (1999) 5421-5426
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5421-5426
    • Abbasi, P.A.1    Miller, S.A.2    Meulia, T.3    Hoitink, H.A.J.4    Ki, J.M.5
  • 3
    • 0041528199 scopus 로고    scopus 로고
    • Detection and quantification of Plectosphaerella cucumerina, a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media and baiting
    • Atkins S.D., Clark I.M., Sosnowska D., Hirsch P.R., and Kerry B.R. Detection and quantification of Plectosphaerella cucumerina, a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media and baiting. Appl. Environ. Micobiol. 69 (2003) 4788-4793
    • (2003) Appl. Environ. Micobiol. , vol.69 , pp. 4788-4793
    • Atkins, S.D.1    Clark, I.M.2    Sosnowska, D.3    Hirsch, P.R.4    Kerry, B.R.5
  • 4
    • 0035169758 scopus 로고    scopus 로고
    • Scorpion ARMS primers for SNP real-time PCR detection and quantification of Pyrenophora teres
    • Bates J.A., and Taylor E.J.A. Scorpion ARMS primers for SNP real-time PCR detection and quantification of Pyrenophora teres. Mol. Plant Pathol. 2 (2001) 275-282
    • (2001) Mol. Plant Pathol. , vol.2 , pp. 275-282
    • Bates, J.A.1    Taylor, E.J.A.2
  • 5
    • 84908219488 scopus 로고
    • Statistical methods for assessing agreement between two methods of clinical measurement
    • Bland J.M., and Altman D.G. Statistical methods for assessing agreement between two methods of clinical measurement. Lancet 1 8476 (1986) 307-310
    • (1986) Lancet , vol.1 , Issue.8476 , pp. 307-310
    • Bland, J.M.1    Altman, D.G.2
  • 6
    • 15444365237 scopus 로고    scopus 로고
    • In vivo monitoring of obligate biotrophic pathogen growth by kinetic PCR
    • Boyle B.R., Hamelin C., and Seguin A. In vivo monitoring of obligate biotrophic pathogen growth by kinetic PCR. Appl. Environ. Micobiol. 71 (2005) 1546-1552
    • (2005) Appl. Environ. Micobiol. , vol.71 , pp. 1546-1552
    • Boyle, B.R.1    Hamelin, C.2    Seguin, A.3
  • 7
    • 0027948419 scopus 로고
    • Characterization of ech-42, a Trichoderma harzianum endochitinase gene expressed during mycoparasitism
    • Carsolio C., Gutierrez A., Jimenez B., Van Montagu M., and Herrera-Estrella A. Characterization of ech-42, a Trichoderma harzianum endochitinase gene expressed during mycoparasitism. PNAS USA 91 (1994) 10903-10907
    • (1994) PNAS USA , vol.91 , pp. 10903-10907
    • Carsolio, C.1    Gutierrez, A.2    Jimenez, B.3    Van Montagu, M.4    Herrera-Estrella, A.5
  • 8
    • 20444405043 scopus 로고    scopus 로고
    • Detection of Meloidogyne incognita and Pochonia chlamydosporia by fluorogenic molecular probes
    • Ciancio A., Loffredo A., Paradies F., Turturo C., and Finetti Sialer M. Detection of Meloidogyne incognita and Pochonia chlamydosporia by fluorogenic molecular probes. OEPP/EPPO Bulletin 35 (2005) 157-164
    • (2005) OEPP/EPPO Bulletin , vol.35 , pp. 157-164
    • Ciancio, A.1    Loffredo, A.2    Paradies, F.3    Turturo, C.4    Finetti Sialer, M.5
  • 9
    • 0141838193 scopus 로고    scopus 로고
    • Development of a SCAR marker and a semi-selective medium for specific quantification of Pichia anomala strain K on apple fruit surfaces
    • De Clercq D., Cognet S., Pujol M., Lepoivre P., and Jijakli M.H. Development of a SCAR marker and a semi-selective medium for specific quantification of Pichia anomala strain K on apple fruit surfaces. Postharvest Biol. Technol. 29 3 (2003) 237-247
    • (2003) Postharvest Biol. Technol. , vol.29 , Issue.3 , pp. 237-247
    • De Clercq, D.1    Cognet, S.2    Pujol, M.3    Lepoivre, P.4    Jijakli, M.H.5
  • 10
    • 33845971910 scopus 로고    scopus 로고
    • SCAR-based real-time PCR to identify a biocontrol strain (T1) of Trichoderma atroviride and study its population dynamics in soils
    • Cordier C., Edel-Hermann V., Martin-Laurent F., Blal B., Steinberg C., and Alabouvette C. SCAR-based real-time PCR to identify a biocontrol strain (T1) of Trichoderma atroviride and study its population dynamics in soils. J. Microbiol. Methods 68 (2007) 60-68
    • (2007) J. Microbiol. Methods , vol.68 , pp. 60-68
    • Cordier, C.1    Edel-Hermann, V.2    Martin-Laurent, F.3    Blal, B.4    Steinberg, C.5    Alabouvette, C.6
  • 11
    • 5644290927 scopus 로고    scopus 로고
    • A duplex-PCR bioassay to detect a Trichoderma virens biocontrol isolate in non-sterile soil
    • Dodd S.L., Hill R.A., and Stewart A. A duplex-PCR bioassay to detect a Trichoderma virens biocontrol isolate in non-sterile soil. Soil Biol. Biochem. 36 (2004) 1955-1965
    • (2004) Soil Biol. Biochem. , vol.36 , pp. 1955-1965
    • Dodd, S.L.1    Hill, R.A.2    Stewart, A.3
  • 12
    • 0033842117 scopus 로고    scopus 로고
    • Trichoderma harzianum T39 preparation for biocontrol of plant diseases - control of Botrytis cinerea, Sclerotinia sclerotiorum and Cladosporium fulvum
    • Elad Y. Trichoderma harzianum T39 preparation for biocontrol of plant diseases - control of Botrytis cinerea, Sclerotinia sclerotiorum and Cladosporium fulvum. Biocontrol Sc. And Techn. 10 4 (2000) 499-507
    • (2000) Biocontrol Sc. And Techn. , vol.10 , Issue.4 , pp. 499-507
    • Elad, Y.1
  • 14
    • 42449152094 scopus 로고
    • Regulation (EC) no. 414/1991 concerning the placing of plant protection products on the market
    • July 15
    • European Parliament. Regulation (EC) no. 414/1991 concerning the placing of plant protection products on the market. Off. J. Eur. Union L414 (1991) 1-194 July 15
    • (1991) Off. J. Eur. Union , vol.L414 , pp. 1-194
    • European Parliament1
  • 15
    • 0344211422 scopus 로고    scopus 로고
    • Direct quantification of fungal DNA from soil substrate using real-time PCR
    • Filion M., St- Arnaud M., and Jabaji-Hare S.H. Direct quantification of fungal DNA from soil substrate using real-time PCR. J. Microbiol. Methods 53 (2003) 67-76
    • (2003) J. Microbiol. Methods , vol.53 , pp. 67-76
    • Filion, M.1    St- Arnaud, M.2    Jabaji-Hare, S.H.3
  • 16
    • 34347385039 scopus 로고    scopus 로고
    • Assessment of real-time PCR as a method for determining the presence of Verticillium dahliae in different Solanaceae cultivars
    • Gayoso C., Martinez de Ilarduya O., Pomar F., and Merino de Caceres F. Assessment of real-time PCR as a method for determining the presence of Verticillium dahliae in different Solanaceae cultivars. Eur. J. Plant Pathol. 118 3 (2007) 199-209
    • (2007) Eur. J. Plant Pathol. , vol.118 , Issue.3 , pp. 199-209
    • Gayoso, C.1    Martinez de Ilarduya, O.2    Pomar, F.3    Merino de Caceres, F.4
  • 17
    • 28544449472 scopus 로고    scopus 로고
    • The use of real-time PCR methods in DNA sequence variation analysis
    • Gibson N.J. The use of real-time PCR methods in DNA sequence variation analysis. Clin. Chim. Acta 363 (2006) 32-47
    • (2006) Clin. Chim. Acta , vol.363 , pp. 32-47
    • Gibson, N.J.1
  • 18
    • 34247394632 scopus 로고    scopus 로고
    • Quantification of the biocontrol agent Pseudomonas fluorescens Pf153 in soil using a quantitative competitive PCR assay unaffected by variability in cell lysis and DNA extraction efficiency
    • Gobbin D., Rezzonico F., and Gessler C. Quantification of the biocontrol agent Pseudomonas fluorescens Pf153 in soil using a quantitative competitive PCR assay unaffected by variability in cell lysis and DNA extraction efficiency. Soil Biol. Biochem. 39 (2007) 1609-1619
    • (2007) Soil Biol. Biochem. , vol.39 , pp. 1609-1619
    • Gobbin, D.1    Rezzonico, F.2    Gessler, C.3
  • 19
    • 33947194925 scopus 로고    scopus 로고
    • A new cultivation independent approach to detect and monitor common Trichoderma species in soils
    • Hagn A., Wallisch S., Radl V., Munch J.C., and Schloter M. A new cultivation independent approach to detect and monitor common Trichoderma species in soils. J. Microbiol. Methods 69 (2007) 86-92
    • (2007) J. Microbiol. Methods , vol.69 , pp. 86-92
    • Hagn, A.1    Wallisch, S.2    Radl, V.3    Munch, J.C.4    Schloter, M.5
  • 20
    • 0004237044 scopus 로고    scopus 로고
    • Harman G.E., and Kubicek C.P. (Eds), Taylor & Francis Ltd., London
    • In: Harman G.E., and Kubicek C.P. (Eds). Trichoderma and Gliocladium vol. 1 and 2 (1998), Taylor & Francis Ltd., London
    • (1998) Trichoderma and Gliocladium , vol.1-2
  • 21
    • 0035176710 scopus 로고    scopus 로고
    • Development of a strain-specific SCAR marker for the detection of Trichoderma atroviride 11, a biological control agent against soil-borne fungal plant pathogens
    • Hermosa M.R., Grondona I., Diaz-Minguez J.M., Iturriaga E.A., and Monte E. Development of a strain-specific SCAR marker for the detection of Trichoderma atroviride 11, a biological control agent against soil-borne fungal plant pathogens. Curr Genet. 38 (2001) 343-350
    • (2001) Curr Genet. , vol.38 , pp. 343-350
    • Hermosa, M.R.1    Grondona, I.2    Diaz-Minguez, J.M.3    Iturriaga, E.A.4    Monte, E.5
  • 23
    • 8744297171 scopus 로고    scopus 로고
    • Real-time detection of Phytophthora nicotianae and P. cytrophtora in citrus roots and soil
    • Ippolito A., Schena L., Nigro F., Soleti Logorio V., and Yaseen T. Real-time detection of Phytophthora nicotianae and P. cytrophtora in citrus roots and soil. Eur. J. Plant Pathol. 110 (2004) 833-843
    • (2004) Eur. J. Plant Pathol. , vol.110 , pp. 833-843
    • Ippolito, A.1    Schena, L.2    Nigro, F.3    Soleti Logorio, V.4    Yaseen, T.5
  • 24
    • 1242273716 scopus 로고    scopus 로고
    • Real-time PCR assays for genus-specific detection and quantification of culturable and non-culturable mycobacteria and pseudomonads in metalworking fluids
    • Khan I.U.H., and Yadav J.S. Real-time PCR assays for genus-specific detection and quantification of culturable and non-culturable mycobacteria and pseudomonads in metalworking fluids. Mol. Cell. Probes 18 (2004) 67-73
    • (2004) Mol. Cell. Probes , vol.18 , pp. 67-73
    • Khan, I.U.H.1    Yadav, J.S.2
  • 26
    • 0036273477 scopus 로고    scopus 로고
    • Development of conventional and quantitative real-time PCR assays for the detection and identification of Rhizoctonia solani AG-3 in potato and soil
    • Lees A.K., Cullen D.W., Sullivan L., and Nicolson M.J. Development of conventional and quantitative real-time PCR assays for the detection and identification of Rhizoctonia solani AG-3 in potato and soil. Plant Pathol. 51 (2002) 293-302
    • (2002) Plant Pathol. , vol.51 , pp. 293-302
    • Lees, A.K.1    Cullen, D.W.2    Sullivan, L.3    Nicolson, M.J.4
  • 27
    • 9644262379 scopus 로고    scopus 로고
    • Development of real-time PCR using Minor Groove Binding probe to monitor the biological control agent Candida oelophila (strain O)
    • Massart S., De Clercq D., Salmon M., Dickburt C., and Jijakli M.H. Development of real-time PCR using Minor Groove Binding probe to monitor the biological control agent Candida oelophila (strain O). J. Microbiol. Methods 60 (2005) 73-82
    • (2005) J. Microbiol. Methods , vol.60 , pp. 73-82
    • Massart, S.1    De Clercq, D.2    Salmon, M.3    Dickburt, C.4    Jijakli, M.H.5
  • 28
    • 0035713577 scopus 로고    scopus 로고
    • Using molecular beacons to detect single-nucleotide polymorphisms with real-time PCR
    • Mhlanga M.M., and Malmberg L. Using molecular beacons to detect single-nucleotide polymorphisms with real-time PCR. Methods 25 (2001) 463-471
    • (2001) Methods , vol.25 , pp. 463-471
    • Mhlanga, M.M.1    Malmberg, L.2
  • 30
    • 33644949517 scopus 로고    scopus 로고
    • A microsatellite-based method for quantification of fungi in decomposing plant material elucidates the role of Fusarium graminearum DON production in saprophytic competition with Trichoderma atroviride in maize tissue microcosms
    • Naef A., Senatore M., and Defago G. A microsatellite-based method for quantification of fungi in decomposing plant material elucidates the role of Fusarium graminearum DON production in saprophytic competition with Trichoderma atroviride in maize tissue microcosms. FEMS Microbiol. Ecol. 55 (2006) 211-220
    • (2006) FEMS Microbiol. Ecol. , vol.55 , pp. 211-220
    • Naef, A.1    Senatore, M.2    Defago, G.3
  • 32
    • 34250079231 scopus 로고
    • Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce
    • Paran I., and Michelmore R.W. Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theor. Appl. Gen. 85 8 (1993) 985-993
    • (1993) Theor. Appl. Gen. , vol.85 , Issue.8 , pp. 985-993
    • Paran, I.1    Michelmore, R.W.2
  • 33
    • 8644276999 scopus 로고    scopus 로고
    • Determining the environmental fate of a filamentous fungus, Trichoderma reesei, in laboratory-contained intact soil-core microcosms using competitive PCR and viability plating
    • Providenti M.A., Maurtner S.I., Chaudhry O., Bombardier M., Scroggins R., Gregorich E., and Smith M.L. Determining the environmental fate of a filamentous fungus, Trichoderma reesei, in laboratory-contained intact soil-core microcosms using competitive PCR and viability plating. Can. J. Microbiol. 50 (2004) 623-631
    • (2004) Can. J. Microbiol. , vol.50 , pp. 623-631
    • Providenti, M.A.1    Maurtner, S.I.2    Chaudhry, O.3    Bombardier, M.4    Scroggins, R.5    Gregorich, E.6    Smith, M.L.7
  • 34
    • 23644437519 scopus 로고    scopus 로고
    • Development of a strain-specific quantitative method for monitoring Pseudomonas fluorescens EPS62e, a novel biocontrol agent of fire blight
    • Pujol M., Badosa E., Cabrefiga J., and Montesinos E. Development of a strain-specific quantitative method for monitoring Pseudomonas fluorescens EPS62e, a novel biocontrol agent of fire blight. FEMS Microbiol. Lett. 249 (2005) 343-352
    • (2005) FEMS Microbiol. Lett. , vol.249 , pp. 343-352
    • Pujol, M.1    Badosa, E.2    Cabrefiga, J.3    Montesinos, E.4
  • 35
    • 33646078347 scopus 로고    scopus 로고
    • Assessment of the environmental fate of the biological control agent of fire blight, Pseudomonas fluorescens EPS62e, on apple by culture and real-time PCR methods
    • Pujol M., Badosa E., Manceau C., and Montesinos E. Assessment of the environmental fate of the biological control agent of fire blight, Pseudomonas fluorescens EPS62e, on apple by culture and real-time PCR methods. Appl. Environ. Microbiol. 72 (2006) 2421-2427
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 2421-2427
    • Pujol, M.1    Badosa, E.2    Manceau, C.3    Montesinos, E.4
  • 36
    • 19944395896 scopus 로고    scopus 로고
    • Specific PCR assays for the detection and quantification of DNA from the biocontrol strain Trichoderma harzianum 2413 in soil
    • Rubio M.B., Hermosa M.R., Keck E., and Monte E. Specific PCR assays for the detection and quantification of DNA from the biocontrol strain Trichoderma harzianum 2413 in soil. Microb. Ecol. 49 (2005) 25-33
    • (2005) Microb. Ecol. , vol.49 , pp. 25-33
    • Rubio, M.B.1    Hermosa, M.R.2    Keck, E.3    Monte, E.4
  • 38
    • 0141890974 scopus 로고    scopus 로고
    • Rapid and sensitive detection of Rosellinia necatrix in roots and soils by real-time Scorpion-PCR
    • Schena L., and Ippolito A. Rapid and sensitive detection of Rosellinia necatrix in roots and soils by real-time Scorpion-PCR. J. Plant Pathol. 85 (2003) 15-25
    • (2003) J. Plant Pathol. , vol.85 , pp. 15-25
    • Schena, L.1    Ippolito, A.2
  • 39
    • 8744263850 scopus 로고    scopus 로고
    • Real-time quantitative PCR: a new technology to detect and study phytopathogenic and antagonistic fungi
    • Schena L., Nigro F., Ippolito A., and Gallitelli D. Real-time quantitative PCR: a new technology to detect and study phytopathogenic and antagonistic fungi. Eur. J. Plant Pathol. 110 (2004) 893-908
    • (2004) Eur. J. Plant Pathol. , vol.110 , pp. 893-908
    • Schena, L.1    Nigro, F.2    Ippolito, A.3    Gallitelli, D.4
  • 41
    • 0036266770 scopus 로고    scopus 로고
    • Production of a monoclonal antibody specific to the genus Trichoderma and closely related fungi, and its use to detect Trichoderma spp in naturally infested composts
    • Thornton C.R., Pitt D., Wakeley G.E., and Talbot N.J. Production of a monoclonal antibody specific to the genus Trichoderma and closely related fungi, and its use to detect Trichoderma spp in naturally infested composts. Microbiology 148 (2002) 1263-1279
    • (2002) Microbiology , vol.148 , pp. 1263-1279
    • Thornton, C.R.1    Pitt, D.2    Wakeley, G.E.3    Talbot, N.J.4
  • 43
    • 18144418186 scopus 로고    scopus 로고
    • Fitness, persistence, and responsiveness of a genetically engineered strain of Trichoderma virens in soil mesocosms
    • Weaver M., Vedenyapina E., and Kenerley C.M. Fitness, persistence, and responsiveness of a genetically engineered strain of Trichoderma virens in soil mesocosms. Appl. Soil Ecol. 29 (2005) 125-134
    • (2005) Appl. Soil Ecol. , vol.29 , pp. 125-134
    • Weaver, M.1    Vedenyapina, E.2    Kenerley, C.M.3
  • 44
    • 0141816823 scopus 로고    scopus 로고
    • 18S rRNA gene variation among common airborne fungi and development of specific oligonucleotide probes for the detection of fungal isolates
    • Wu Z., Tsumura Y., Blomquist G., and Wang X.R. 18S rRNA gene variation among common airborne fungi and development of specific oligonucleotide probes for the detection of fungal isolates. Appl. Environ. Microbiol. 69 (2003) 5389-5397
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 5389-5397
    • Wu, Z.1    Tsumura, Y.2    Blomquist, G.3    Wang, X.R.4
  • 46
    • 10444226582 scopus 로고    scopus 로고
    • Detection and quantification of Wallemia sebi in aerosols by real-time PCR, conventional PCR, and cultivation
    • Zeng Q.Y., Westermark S.O., Rasmuson-Lestander A., and Wang X.R. Detection and quantification of Wallemia sebi in aerosols by real-time PCR, conventional PCR, and cultivation. Appl. Environ. Microbiol. 70 (2004) 7295-7302
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 7295-7302
    • Zeng, Q.Y.1    Westermark, S.O.2    Rasmuson-Lestander, A.3    Wang, X.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.