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Volumn 48, Issue SUPPL. 1, 2008, Pages

Construction of an Amaranthus hypochondriacus bacterial artificial chromosome library and genomic sequencing of herbicide target genes

Author keywords

[No Author keywords available]

Indexed keywords

AMARANTHUS; AMARANTHUS CAUDATUS; AMARANTHUS CRUENTUS; AMARANTHUS HYPOCHONDRIACUS; BACTERIA (MICROORGANISMS);

EID: 42449113949     PISSN: 0011183X     EISSN: None     Source Type: Journal    
DOI: 10.2135/cropsci2007.08.0434tpg     Document Type: Article
Times cited : (23)

References (44)
  • 1
    • 30044435245 scopus 로고    scopus 로고
    • Ammiraju, J.S.S., M. Luo, J.L. Goicoechea, W. Wang, D. Kudrna, C. Mueller, J. Talag, H. Kim, N.B. Sisneros, B. Blackmon, E. Fang, J.B. Tomkins, D. Brar, D. MacKill, S. McCouch, N. Kurata, G. Lambert, D.W. Galbraith, K. Arumuganathan, K. Rao, J.G. Walling, N. Gill, Y. Yu, P. SanMiguel, C. Soderlund, S. Jackson, and R.A. Wing. 2006. The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Res. 16:140-147.
    • Ammiraju, J.S.S., M. Luo, J.L. Goicoechea, W. Wang, D. Kudrna, C. Mueller, J. Talag, H. Kim, N.B. Sisneros, B. Blackmon, E. Fang, J.B. Tomkins, D. Brar, D. MacKill, S. McCouch, N. Kurata, G. Lambert, D.W. Galbraith, K. Arumuganathan, K. Rao, J.G. Walling, N. Gill, Y. Yu, P. SanMiguel, C. Soderlund, S. Jackson, and R.A. Wing. 2006. The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Res. 16:140-147.
  • 2
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative
    • Arabidopsis Genome Initiative. 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 3
    • 0002383191 scopus 로고
    • Tetrapyrrole metabolism in photosynthetic organisms
    • H.A. Dailey ed, McGraw-Hill, New York
    • Beale, S.I., and J.D. Weinstein. 1990. Tetrapyrrole metabolism in photosynthetic organisms. p. 287-391. In H.A. Dailey (ed.) Biosynthesis of heme and chlorophylls. McGraw-Hill, New York.
    • (1990) Biosynthesis of heme and chlorophylls , pp. 287-391
    • Beale, S.I.1    Weinstein, J.D.2
  • 6
    • 0001166779 scopus 로고
    • Food uses of grain amaranth
    • Breene, W.M. 1991. Food uses of grain amaranth. Cereal Foods World 36:426-430.
    • (1991) Cereal Foods World , vol.36 , pp. 426-430
    • Breene, W.M.1
  • 7
    • 84947693580 scopus 로고
    • The proteins of grain amaranth
    • Bressani, R. 1989. The proteins of grain amaranth. Food Rev. Int. 5:13-38.
    • (1989) Food Rev. Int , vol.5 , pp. 13-38
    • Bressani, R.1
  • 8
    • 0001847946 scopus 로고
    • Chemical composition of grain amaranth cultivars and effects of processing on their nutritional quality
    • Bressani, R., A. Sanchez-Marroquin, and E. Morales. 1992. Chemical composition of grain amaranth cultivars and effects of processing on their nutritional quality. Food Rev. Int. 8:23-49.
    • (1992) Food Rev. Int , vol.8 , pp. 23-49
    • Bressani, R.1    Sanchez-Marroquin, A.2    Morales, E.3
  • 9
    • 51249165756 scopus 로고
    • Construction and characterization of a bacterial artificial chromosome library of Arabidopsis thaliana
    • Choi, S., R.A. Creelman, J.E. Mullet, and R.A. Wing. 1995. Construction and characterization of a bacterial artificial chromosome library of Arabidopsis thaliana. Plant Mol. Biol. Rep. 13:124-128.
    • (1995) Plant Mol. Biol. Rep , vol.13 , pp. 124-128
    • Choi, S.1    Creelman, R.A.2    Mullet, J.E.3    Wing, R.A.4
  • 10
    • 0141751397 scopus 로고    scopus 로고
    • Multiple resistance to imazethapyr and atrazine in Powell amaranth (Amaranthus powellii)
    • Diebold, R.S., K.E. McNaughton, E.A. Lee, and F.J. Tardif. 2003. Multiple resistance to imazethapyr and atrazine in Powell amaranth (Amaranthus powellii). Weed Sci. 51:312-318.
    • (2003) Weed Sci , vol.51 , pp. 312-318
    • Diebold, R.S.1    McNaughton, K.E.2    Lee, E.A.3    Tardif, F.J.4
  • 11
    • 0032935861 scopus 로고    scopus 로고
    • ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites
    • Emanuelsson, O., H. Nielsen, and G. von Heijne. 1999. ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites. Protein Sci. 8:978-984.
    • (1999) Protein Sci , vol.8 , pp. 978-984
    • Emanuelsson, O.1    Nielsen, H.2    von Heijne, G.3
  • 12
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred: II. Error probabilities
    • Ewing, B., and P. Green. 1998. Base-calling of automated sequencer traces using Phred: II. Error probabilities. Genome Res. 8:186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 13
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred. I. Accuracy assessment
    • Ewing, B., L. Hillier, M. Wendl, and P. Green. 1998. Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res. 8:175-185.
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.3    Green, P.4
  • 14
    • 0031857173 scopus 로고    scopus 로고
    • Occurrence of microsatellites in spinach sequences form computer databases and development of polymorphic SSR markers
    • Groben, R., and G. Wricke. 1998. Occurrence of microsatellites in spinach sequences form computer databases and development of polymorphic SSR markers. Plant Breed. 117:271-274.
    • (1998) Plant Breed , vol.117 , pp. 271-274
    • Groben, R.1    Wricke, G.2
  • 15
    • 0030781182 scopus 로고    scopus 로고
    • The occurrence of herbicide-resistant weeds worldwide
    • Heap, I.M. 1997. The occurrence of herbicide-resistant weeds worldwide. Pestic. Sci. 51:235-243.
    • (1997) Pestic. Sci , vol.51 , pp. 235-243
    • Heap, I.M.1
  • 23
    • 0035056110 scopus 로고    scopus 로고
    • Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2)
    • Luo, M., Y.-H. Wang, D. Frisch, T. Joobeur, R.A. Wing, and R.A. Dean. 2001. Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2). Genome 44: 154-162.
    • (2001) Genome , vol.44 , pp. 154-162
    • Luo, M.1    Wang, Y.-H.2    Frisch, D.3    Joobeur, T.4    Wing, R.A.5    Dean, R.A.6
  • 24
    • 1542548246 scopus 로고    scopus 로고
    • An improved method for plant BAC library construction
    • Luo, M., and R. Wing. 2003. An improved method for plant BAC library construction. Methods Mol. Biol. 236:3-20.
    • (2003) Methods Mol. Biol , vol.236 , pp. 3-20
    • Luo, M.1    Wing, R.2
  • 26
    • 31744436128 scopus 로고    scopus 로고
    • Mutations in ALS confer herbicide resistance in redroot pigweed (Amaranthus retroflexus) and Powell amaranth (Amaranthus powellii)
    • McNaughton, K.E., J. Letarte, E.A. Lee, and F.J. Tardif. 2005. Mutations in ALS confer herbicide resistance in redroot pigweed (Amaranthus retroflexus) and Powell amaranth (Amaranthus powellii). Weed Sci. 53:17-22.
    • (2005) Weed Sci , vol.53 , pp. 17-22
    • McNaughton, K.E.1    Letarte, J.2    Lee, E.A.3    Tardif, F.J.4
  • 27
    • 0028474199 scopus 로고
    • YACs, BACs, PACs, and MACs: Artificial chromosomes as research tools
    • Monaco, A.P., and Z. Larin. 1994. YACs, BACs, PACs, and MACs: Artificial chromosomes as research tools. Trends Biotechnol. 12:280-286.
    • (1994) Trends Biotechnol , vol.12 , pp. 280-286
    • Monaco, A.P.1    Larin, Z.2
  • 29
    • 0036478903 scopus 로고    scopus 로고
    • Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
    • Morgante, M., M. Hanafey, and W. Powell. 2002. Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat. Genet. 30:194-200.
    • (2002) Nat. Genet , vol.30 , pp. 194-200
    • Morgante, M.1    Hanafey, M.2    Powell, W.3
  • 30
    • 3142734477 scopus 로고    scopus 로고
    • Construction and characterisation of a BAC library for genome analysis of the allotetraploid coffee species (Coffea arabica L.)
    • Noir, S., S. Patheyron, M.C. Combes, P. Lashermes, and B. Chalhoub. 2004. Construction and characterisation of a BAC library for genome analysis of the allotetraploid coffee species (Coffea arabica L.). Theor. Appl. Genet. 109:225-230.
    • (2004) Theor. Appl. Genet , vol.109 , pp. 225-230
    • Noir, S.1    Patheyron, S.2    Combes, M.C.3    Lashermes, P.4    Chalhoub, B.5
  • 32
    • 33747589914 scopus 로고    scopus 로고
    • A codon deletion confers resistance to herbicides inhibiting protoporphyrinogen oxidase
    • Patzoldt, W.L., A.G. Hager, J.S. McCormick, and P.J. Tranel. 2006. A codon deletion confers resistance to herbicides inhibiting protoporphyrinogen oxidase. Proc. Natl. Acad. Sci. USA 103:12329-12334.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 12329-12334
    • Patzoldt, W.L.1    Hager, A.G.2    McCormick, J.S.3    Tranel, P.J.4
  • 34
    • 0001831707 scopus 로고
    • Grain amaranths
    • N.W. Simmonds ed, Longman, London
    • Sauer, J.D. 1976. Grain amaranths. p. 4-7. In N.W. Simmonds (ed.) Evolution of crop plants. Longman, London.
    • (1976) Evolution of crop plants , pp. 4-7
    • Sauer, J.D.1
  • 35
    • 0035082732 scopus 로고    scopus 로고
    • The plastid chromosome of spinach (Spinacia oleracea): Complete nucleotide sequence and gene organization
    • Schmitz-Linneweber, C., R.M. Maier, J.P. Alcaraz, A. Cottet, R.G. Herrmann, and R. Mache. 2001. The plastid chromosome of spinach (Spinacia oleracea): Complete nucleotide sequence and gene organization. Plant Mol. Biol. 45:307-315.
    • (2001) Plant Mol. Biol , vol.45 , pp. 307-315
    • Schmitz-Linneweber, C.1    Maier, R.M.2    Alcaraz, J.P.3    Cottet, A.4    Herrmann, R.G.5    Mache, R.6
  • 37
    • 0001638213 scopus 로고    scopus 로고
    • Duplications that suppress and deletions that restore expression from a chalcone synthase multigene family
    • Todd, J.J., and L.O. Vodkin. 1996. Duplications that suppress and deletions that restore expression from a chalcone synthase multigene family. Plant Cell 8:687-699.
    • (1996) Plant Cell , vol.8 , pp. 687-699
    • Todd, J.J.1    Vodkin, L.O.2
  • 38
    • 12544257553 scopus 로고    scopus 로고
    • Bacterial artificial chromosome (BAC) library resource for positional cloning of pest and disease resistance genes in cassava (Manihot esculenta Crantz)
    • Tomkins, J.P., M. Fregene, D. Main, H. Kim, R. Wing, and J. Tohme. 2004. Bacterial artificial chromosome (BAC) library resource for positional cloning of pest and disease resistance genes in cassava (Manihot esculenta Crantz). Plant Mol. Biol. 56:555-561.
    • (2004) Plant Mol. Biol , vol.56 , pp. 555-561
    • Tomkins, J.P.1    Fregene, M.2    Main, D.3    Kim, H.4    Wing, R.5    Tohme, J.6
  • 39
    • 0033197783 scopus 로고    scopus 로고
    • A bacterial artificial chromosome library for soybean PI 437654 and identification of clones associated with cyst nematode resistance
    • Tomkins, J.P., R. Mahalingam, H. Smith, J.L. Goicoechea, H.T. Knap, and R.A. Wing. 1999. A bacterial artificial chromosome library for soybean PI 437654 and identification of clones associated with cyst nematode resistance. Plant Mol. Biol. 41:25-32.
    • (1999) Plant Mol. Biol , vol.41 , pp. 25-32
    • Tomkins, J.P.1    Mahalingam, R.2    Smith, H.3    Goicoechea, J.L.4    Knap, H.T.5    Wing, R.A.6
  • 40
    • 0035726870 scopus 로고    scopus 로고
    • Grape (Vitis vinifiera L.) BAC library construction, preliminary STC analysis, and identification of clones associated with flavonoid and stilbene biosynthesis
    • Tomkins, J.P., D.C Peterson, T.J. Yang, D. Main, E.F. Ablett, R.J. Henry, L.S. Lee, T.A. Holton, D. Waters, and R.A. Wing. 2001. Grape (Vitis vinifiera L.) BAC library construction, preliminary STC analysis, and identification of clones associated with flavonoid and stilbene biosynthesis. Am. J. Enol. Vitic. 52:287-291.
    • (2001) Am. J. Enol. Vitic , vol.52 , pp. 287-291
    • Tomkins, J.P.1    Peterson, D.C.2    Yang, T.J.3    Main, D.4    Ablett, E.F.5    Henry, R.J.6    Lee, L.S.7    Holton, T.A.8    Waters, D.9    Wing, R.A.10
  • 42
    • 0035827624 scopus 로고    scopus 로고
    • Dual targeting of spinach protoporphyrinogen oxidase II to mitochondria and chloroplasts by alternative use of two in-frame initiation codons
    • Watanabe, N., F.-S. Che, M. Iwano, S. Takayama, S. Yoshida, and A. Isogai. 2001. Dual targeting of spinach protoporphyrinogen oxidase II to mitochondria and chloroplasts by alternative use of two in-frame initiation codons. J. Biol. Chem. 276:20474-20481.
    • (2001) J. Biol. Chem , vol.276 , pp. 20474-20481
    • Watanabe, N.1    Che, F.-S.2    Iwano, M.3    Takayama, S.4    Yoshida, S.5    Isogai, A.6
  • 43
    • 0028567284 scopus 로고
    • Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor
    • Woo, S.S., J. Jiang, B.S. Gill, A.H. Paterson, and R.A. Wing. 1994. Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucleic Acids Res. 22:4922-4931.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4922-4931
    • Woo, S.S.1    Jiang, J.2    Gill, B.S.3    Paterson, A.H.4    Wing, R.A.5
  • 44
    • 0041473810 scopus 로고    scopus 로고
    • Construction of a deep coverage BAC library from Capsicum annuum, 'CM334'
    • Yoo, E.Y., S. Kim, Y.H. Kim, C.J. Lee, and B.D. Kim. 2003. Construction of a deep coverage BAC library from Capsicum annuum, 'CM334'. Theor. Appl. Genet. 107:540-543.
    • (2003) Theor. Appl. Genet , vol.107 , pp. 540-543
    • Yoo, E.Y.1    Kim, S.2    Kim, Y.H.3    Lee, C.J.4    Kim, B.D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.