Construction of a quinoa (Chenopodium quinoa Willd.) BAC library and its use in identifying genes encoding seed storage proteins

Theoretical and Applied Genetics

Volumn 112, Issue 8, 2006, Pages 1593-1600

  Stevens, M R ^a   Coleman, C E ^a   Parkinson, S E ^a,b   Maughan, P J ^a   Zhang, H B ^c   Balzotti, M R ^a   Kooyman, D L ^a   Arumuganathan, K ^d   Bonifacio, A ^e   Fairbanks, D J ^a   Jellen, E N ^a   Stevens, J J ^a  

^a BRIGHAM YOUNG UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c TEXAS A AND M UNIVERSITY   (United States)

^d BENAROYA RESEARCH INSTITUTE   (United States)

^e The Foundation for the Promotion and Investigation of Andean Products (PROINPA)   (Bolivia)

Author keywords

[No Author keywords available]

Indexed keywords

11S GLOBULIN; AMINO ACID COMPOSITIONS; BAC LIBRARY; GENE IDENTIFICATION; GENES ENCODING; GENOMIC DNA; HARSH ENVIRONMENT; HUMAN NUTRITION; MEGABASE; NUCLEAR GENOMES; PARTIAL SEQUENCES; PHYSICAL MAPPING; PROTEIN CONTENTS; RESTRICTION ENDONUCLEASES; SEED STORAGE PROTEINS; SOUTHERN BLOT;

AMINO ACIDS; CLONING; LIBRARIES; NUTRITION; PLANTS (BOTANY); PROBES;

GENES;

CHENOPODIUM QUINOA;

PLANT DNA; VEGETABLE PROTEIN;

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; CELL NUCLEUS; CHEMISTRY; CHENOPODIUM QUINOA; GENE; GENE LIBRARY; GENETICS; ISOLATION AND PURIFICATION; PLANT SEED;

CELL NUCLEUS; CHENOPODIUM QUINOA; CHROMOSOMES, ARTIFICIAL, BACTERIAL; DNA, PLANT; GENE LIBRARY; GENES, PLANT; PLANT PROTEINS; SEEDS;

EID: 33746760450     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-006-0266-6     Document Type: Article

References (48)

1. Arumuganathan K, Earle ED (1991) Estimation of nuclear DNA content of plants by Xow cytometry. Plant Mol Biol Rep 9:229-241
2. Cenci A, Chantret N, Kong X, Gu Y, Anderson OD, Fahima T, Distelfeld A, Dubcovsky J (2003) Construction and characterization of a half million clone BAC library of durum wheat (Triticum turgidum ssp. durum). Theor Appl Genet 107:931-939
3. Chauhan GS, Eskin NAM, Mills PA (1999) EVect of saponin extraction on the nutritional quality of quinoa (Chenopodium quinoa Willd.) proteins. J Food Sci Technol 36:123-126
4. Chen Q, Sun S, Ye Q, McCuine S, Hu V E, Zhang H-B (2004) Construction of two BAC libraries from the wild Mexican diploid potato, Solanum pinnatisectum, and the identification of clones near the late blight and Colorado potato beetle resistance loci. Theor Appl Genet 108:1002-1009
5. Choi S, Creelman RA, Mullet JE, Wing RA (1995) Construction and characterization of a bacterial artificial chromosome library of Arabidopsis thaliana. Plant Mol Biol Rep 13:124-128
6. Coles ND, Coleman CE, Christensen SA, Jellen EN, Stevens MR, Bonifacio A, Rojas-Beltran JA, Fairbanks DJ, Maughan PJ (2005) Development and use of an expressed sequenced tag library in quinoa (Chenopodium quinoa Willd.) for the discovery of single nucleotide polymorphisms. Plant Sci 168:439-447
7. Coulter L, Lorenz K (1990) Quinoa-composition, nutritional value, food applications. Food Sci Technol 23:203-207
8. Danesh D, Peñuela S, Mudge J, Denny RL, Nordstrom H, Martinez JP, Young ND, (1998) A bacterial artificial chromosome library for soybean and identification of clones near a major cyst resistance gene. Theor Appl Genet 96:196-202
9. Deng Z, Tao Q, Chang Y-L, Huang S, Ling P, Yu C, Chen C, Gmitter Jr FG, Zhang H-B (2001) Construction of a bacterial artificial chromosome (BAC) library for citrus and identification of BAC contigs containing resistance gene candidates. Theor Appl Genet 102:1177-1184
10. Domoney C, Casey R (1985) Measurement of gene number for seed storage proteins in Pisum. Nucl Acids Res 13:687-699
11. Domoney C, Ellis THN, Davies DR (1986) Organization and mapping of legumin genes in Pisum. Mol Gen Genet 202:280-285
12. Frijters ACJ, Zhang Z, van-Damme M, Wang G-L, Ronald PC, Michelmore RW (1997) Construction of a bacterial artificial chromosome library containing large EcoRI and HindIII genomic fragments of lettuce. Theor Appl Genet 94:390-399
13. Giusti L (1970) El género Chenopodium en Argentina: I. Números de cromosomas. Darwiniana 16:98-105
14. Heim U, Schubert R, Bäumlein H, Wobus U (1989) The legumin gene family: structure and evolutionary implications of Vicia faba B-type genes and pseudogenes. Plant Mol Biol 13:653-663
15. Hong CP, Lee SJ, Park JY, Plaha P, Park YS, Lee YK, Choi JE, Kim KY, Lee JH, Lee J, Jin H, Choi SR, Lim YP (2004) Construction of a BAC library of Korean ginseng and initial analysis of BACend sequences. Mol Genet Genomics 271:709-716
16. Kawabe A, Miyashita NT (2003) Patterns of codon usage bias in three dicot and four monocot plant species. Genes Genet Syst 78:343-352
17. Kolano B, Pando LG, Maluszynska J (2001) Molecular cytogenetic studies in Chenopodium quinoa and Amaranthus caudatus. Acta Soc Bot Pol 70:85-90
18. Luo M, Wang Y-H, Frisch D, Joobeur T, Wing RA, Dean RA (2001) Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2). Genome 44:154-162
19. Mason SL, Stevens MR, Jellen EN, Bonifacio A, Fairbanks DJ, Coleman CE, McCarty RR, Rasmussen AG, Maughan PJ (2005) Development and use of microsatellite markers for germplasm characterization in quinoa (Chenopodium quinoa Willd.). Crop Sci 45:1618-1630
20. Maughan PJ, Bonifacio A, Jellen EN, Stevens MR, Coleman CE, Ricks M, Mason SL, Jarvis DE, Gardunia BW, Fairbanks DJ (2004) A genetic linkage map of quinoa (Chenopodium quinoa) based on AFLP, RAPD, and SSR markers. Theor Appl Genet 109:1188-1195
21. Monaco AP, Larin Z (1994) YACs, BACs, PACs and MACs: artificial chromosomes as research tools. Trends Biotechnol 12:280-286
22. Moullet O, Zhang H-B, Lagudah ES (1999) Construction and characterization of a large DNA insert library from the D genome of wheat. Theor Appl Genet 99:305-313
23. Nam Y-W, Penmetsa RV, Endre G, Uribe P, Kim D, Cook DR (1999) Construction of a bacterial artificial chromosome library of Medicago truncatula and identification of clones containing ethylene-response genes. Theor Appl Genet 98:638-646
24. Nam Y-W, Lee J-R, Song K-H, Lee M-K, Robbins MD, Chung SM, Staub JE, Zhang H-B (2005) Construction of two BAC libraries from cucumber (Cucumis sativus L.) and identification of clones linked to yield component quantitative trait loci. Theor Appl Genet 111:150-161
25. Nilmalgoda SD, Cloutier S, Walichnowski AZ (2003) Construction and characterization of a bacterial artificial chromosome (BAC) library of hexaploid wheat (Triticum aestivum L.) and validation of genome coverage using locus-speciWc primers. Genome 46:870-878
26. Noir S, Patheyron S, Combes M-C, Lashermes P, Chalhoub B (2004) Construction and characterisation of a BAC library for genome analysis of the allotetraploid coVee species (CoVea arabica L.). Theor Appl Genet 109:225-230
27. Parkinson SE (2001) Cytogenetic studies and construction of a bacterial artificial chromosome library from Chenopodium quinoa (Willd.). MS thesis. Agronomy and Horticulture, Provo, UT
28. Partap T, Joshi BD, Galwey NW (1998) Chenopods. Chenopodium spp. Promoting the conservation and use of underutilized and neglected crops. 22. Institute of Plant Genetics and Crop Plant Research/International Plant Genetic Resources Institute, Gatersleben, Germany/Rome, Italy
29. Prado FE, Boero C, Gallardo M, González JA (2000) EVect of NaCl on germination, growth, and soluble sugar content in Chenopodium quinoa Willd. seeds Bot Bull Acad Sin 41:27-34
30. Risi JC, Galwey NW (1984) The Chenopodium grains of the Andes: Inca crops for modern agriculture. Adv Appl Biol 10:145-216
31. Ruas PM, Bonifacio A, Ruas CF, Fairbanks DJ, Andersen WR (1999) Genetic relationship among 19 accessions of six species of Chenopodium L., by random ampliWed polymorphic DNA fragments (RAPD). Euphytica 105:25-32
32. Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984) Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci USA 81:8014-8018
33. Salinas J, Matassi G, Montero LM, Bernardi G (1988) Compositional compartmentalization and compositional patterns in the nuclear genomes of plants. Nucl Acids Res 16:4269-4285
34. Simmonds NW (1971) The breeding system of Chenopodium quinoa. I. Male sterillity. Heredity 27:73-82
35. Talbot DR, Adang MJ, Slightom JL, Hall TC (1984) Size and organization of a multigene family encoding phaseolin, the major seed storage protein of Phaseolus vulgaris L. Mol Gen Genet 198:42-49
36. Tapia M, Gandarillas H, Alandia S, Cardozo A, Mujica R, Ortiz R, Otazu J, Rea J, Salas B, Zanabria E (1979) Quinua y kañiwa: Cultivos andinos. CIID-IICA, Bogota, Columbia
37. Tomkins JP, Yu Y, Miller-Smith H, Frisch DA, Woo SS, Wing RA (1999a) A bacterial artificial chromosome library for sugarcane. Theor Appl Genet 99:419-424
38. Tomkins JP, Mahalingam R, Smith H, Goicoechea JL, Knap HT, Wing RA (1999b) A bacterial artificial chromosome library for soybean PI 437654 and identification of clones associated with cyst nematode resistance. Plant Mol Biol 41:25-32
39. Tomkins JP, Davis G, Main D, Yim Y, Duru N, Musket T, Goicoechea JL, Frisch DA, Coe EH Jr, Wing RA (2002) Construction and characterization of a deep-coverage bacterial artificial chromosome library for maize. Crop Sci 42:928-933
40. Vacher JJ (1998) Responses of two main Andean crops, quinoa (Chenopodium quinoa Willd) and papa amarga (Solanum juzepczukii Buk.) to drought on the Bolivian Altiplano: signiWcance of local adaptation. Agric Ecosyst Environ 68:99-108
41. Ward SM (2000) Allotetraploid segregation for single-gene morphological characters in quinoa (Chenopodium quinoa Willd.). Euphytica 116:11-16
42. Wobus U, Bäumlein H, Bassüner R, Heim U, Jung R, Müntz K, Saalbach G, Weschke W (1986) Characteristics of two types of legumin genes in the Weld bean (Vicia faba L. var. minor) genome as revealed by cDNA analysis. FEBS Lett 201:74-80
43. Woo S-S, Jiang J, Gill BS, Paterson AH, Wing RA (1994) Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucl Acids Res 22:4922-4931
44. Yang D, Parco A, Nandi S, Subudhi P, Zhu Y, Wang G, Huang N (1997) Construction of a bacterial artificial chromosome (BAC) library and identification of overlapping BAC clones with chromosome 4-speciWc RFLP markers in rice. Theor Appl Genet 95:1147-1154
45. Yoo EY, Kim S, Kim YH, Lee CJ, Kim B-D (2003) Construction of a deep coverage BAC library from Capsicum annuum, 'CM334'. Theor Appl Genet 107:540-543
46. Yu Y, Tomkins JP, Waugh R, Frisch DA, Kudrna D, Kleinhofs A, Brueggeman RS, Muehlbauer GJ, Wise RP, Wing RA (2000) A bacterial artificial chromosome library for barley (Hordeum vulgare L.) and the identification of clones containing putative resistance genes. Theor Appl Genet 101:1093-1099
47. Zhang H-B (2000) Construction and manipulation of large-insert bacterial clone libraries manual. Texas A&M University, College Station, TX
48. Zhang H-B, Choi S, Woo S-S, Li Z, Wing RA (1996) Construction and characterization of two rice bacterial artificial chromosome libraries from the parents of a permanent recombinant inbred mapping population. Mol Breed 2:11-24