Herbivory-induced changes in the small-RNA transcriptome and phytohormone signaling in Nicotiana attenuata

Proceedings of the National Academy of Sciences of the United States of America

Volumn 105, Issue 12, 2008, Pages 4559-4564

  Pandey, Shree P ^a   Shahi, Priyanka ^b   Gase, Klaus ^a   Baldwin, Ian T ^a  

^a MAX PLANCK INSTITUTE FOR CHEMICAL ECOLOGY   (Germany)

^b UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

454 sequencing; Herbivore resistance; JA signaling; Phytohormone regulation

Indexed keywords

DNA DIRECTED RNA POLYMERASE; ETHYLENE; JASMONIC ACID; PHYTOHORMONE; TRANSCRIPTOME; CYCLOPENTANE DERIVATIVE; ETHYLENE DERIVATIVE; MICRORNA; OXYLIPIN; PLANT RNA; RCA PROTEIN, PLANT; RNA DIRECTED RNA POLYMERASE; SMALL INTERFERING RNA; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ARTICLE; CONTROLLED STUDY; GENE SILENCING; HERBIVORY; INSECT RESISTANCE; NICOTIANA ATTENUATA; NONHUMAN; PHOTOSYNTHESIS; PLANT DEFENSE; PRIORITY JOURNAL; TOBACCO; WILD TYPE; ANIMAL; BIOSYNTHESIS; DRUG EFFECT; FEEDING BEHAVIOR; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GENOTYPE; GROWTH, DEVELOPMENT AND AGING; LARVA; LEPIDOPTERA; METABOLISM; MOLECULAR GENETICS; PARASITOLOGY; PHYSIOLOGY; SIGNAL TRANSDUCTION;

HEXAPODA; NICOTIANA ATTENUATA;

ANIMALS; CYCLOPENTANES; ETHYLENES; FEEDING BEHAVIOR; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENE SILENCING; GENOTYPE; LARVA; MANDUCA; MICRORNAS; MOLECULAR SEQUENCE DATA; OXYLIPINS; PHOTOSYNTHESIS; PLANT GROWTH REGULATORS; PLANT PROTEINS; RNA REPLICASE; RNA, PLANT; RNA, SMALL INTERFERING; SIGNAL TRANSDUCTION; TOBACCO;

EID: 42449092941     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0711363105     Document Type: Article

References (38)

1. Walling LL (2000) The myriad plant responses to herbivores. J Plant Growth Regul 19:195-216.
2. Korth KL (2003) Profiling the response of plants to herbivorous insects. Genome Biol 4:221.
3. Ralph SG, et al. (2006) Conifer defence against insects: Microarray gene expression profiling of Sitka spruce (Picea sitchensis) induced by mechanical wounding or feeding by spruce budworms (Choristoneura occidentalis) or white pine weevils (Pissodes strobi) reveals large-scale changes of the host transcriptome. Plant Cell Environ 29:1545-1570.
4. Schmidt DD, Voelckel C, Hartl M, Schmidt S, Baldwin IT (2005) Specificity in ecological interactions. Attack from the same lepidopteran herbivore results in species-specific transcriptional responses in two solanaceous host plants. Plant Physiol 138:1763-1773.
5. Lorenzo O, Piqueras R, Sanchez-Serrano JJ, Solano R (2003) ETHYLENE RESPONSE FACTOR1 integrates signals from ethylene and jasmonate pathways in plant defense. Plant Cell 15:165-178.
6. Halitschke R, Baldwin IT (2004) Jasmonates and related compounds in plant-insect interactions. J Plant Growth Regul 23:238-245.
7. Voinnet O (2002) RNA silencing: small RNAs as ubiquitous regulators of gene expression. Curr Opin Plant Biol 5:444-451.
8. Baulcombe D (2004) RNA silencing in plants. Nature 431:356-363.
9. Wassenegger M, Krczal G (2006) Nomenclature and functions of RNA-directed RNA polymerases. Trends Plants Sci 11:142-151.
10. Yoo B-C, et al. (2004) A systemic small RNA signaling system in plants. Plant Cell 16:1979-2000.
11. Allen E, Xie ZX, Gustafson AM, Carrington JC (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121:207-221.
12. Mourrain P, et al. (2000) Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance. Cell 101:533-542.
13. Yang SJ, Carter SA, Cole AB, Cheng NH, Nelson RS (2004) A natural variant of a host RNA-dependent RNA polymerase is associated with increased susceptibility to viruses by Nicotiana benthamiana. Proc Natl Acad Sci USA 101:6297-6302.
14. Alleman M, et al. (2006) An RNA-dependent RNA polymerase is required for paramutation in maize. Nature 442:295-298.
15. Himber C, Dunoyer P, Moissiard G, Ritzenthaler C, Voinnet O (2003) Transitivity-dependent and -independent cell-to-cell movement of RNA silencing. EMBO J 22:4523-4533.
16. Schwach F, Vaistij FE, Jones L, Baulcombe DC (2005) An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal. Plant Physiol 138:1842-1852.
17. Pandey SP, Baldwin IT (2007) RNA-directed RNA polymerase 1 (RdR1) mediates the resistance of Nicotiana attenuata to herbivore attack in nature. Plant J 50:40-53.
18. Halitschke R, Schittko U, Pohnert G, Boland W, Baldwin IT (2001) Molecular interactions between the specialist herbivore Manduca sexta (Lepidoptera, Sphingidae) and its natural host Nicotiana attenuata. III Fatty acid-amino acid conjugates in herbivore oral secretions are necessary and sufficient for herbivore-specific plant responses. Plant Physiol 125:711-717.
19. Giri AP, et al. (2006) Molecular interactions between the specialist herbivore Manduca sexta (Lepidoptera, Sphingidae) and its natural host Nicotiana attenuata. VII Changes in the plant's proteomes. Plant Physiol 142:1621-1641.
20. Kang JH, Wang L, Giri A, Baldwin IT (2006) Silencing threonine deaminase and JAR4 in Nicotiana attenuata impairs jasmonic acid-isoleucine-mediated defenses against Manduca sexta. Plant Cell 18:3303-3320.
21. Halitschke R, Baldwin IT (2003) Antisense LOX expression increases herbivore performance by decreasing defense responses and inhibiting growth-related transcriptional reorganization in Nicotiana attenuata. Plant J 36:794-807.
22. Halitschke R, Ziegler J, Keinanen M, Baldwin IT (2004) Silencing of hydroperoxide lyase and allene oxide synthase reveals substrate and defense signaling crosstalk in Nicotiana attenuata. Plant J 40:35-46.
23. Paschold A, Halitschke R, Baldwin IT (2007) Co(i)-ordinating defenses: NaCOI1 mediates herbivore-induced resistance in Nicotiana attenuata and reveals the role of herbivore movement in avoiding defenses. Plant J 51:579-591.
24. von Dahl CC, et al. (2007) Tuning the herbivore-induced ethylene burst: The role of transcript accumulation and ethylene perception in Nicotiana attenuata. Plant J 51:293-307.
25. Winz RA, Baldwin IT (2001) Molecular interactions between the specialist herbivore Manduca sexta (Lepidoptera, Sphingidae) and its natural host Nicotiana attenuata. IV Insect-induced ethylene reduces jasmonate-induced nicotine accumulation by regulating putrescine N-methyltransferase transcripts. Plant Physiol 125:2189-2202.
26. Kasschau KD, et al. (2007) Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biol 5:e57.
27. Lu C, et al. (2006) MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res 16:1276-1288.
28. Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ (2006) miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 34:D140-D144.
29. Wang L, et al. (2007) Independently silencing two members of the JAR family impairs levels of trypsin proteinase inhibitors but not nicotine. Planta 226:159-167.
30. Li L, et al. (2004) The tomato homolog of CORONATINE-INSENSITIVE1 is required for the maternal control of seed maturation, jasmonate-signaled defense responses, and glandular trichome development. Plant Cell 16:126-143.
31. Navarro L, et al. (2006) A plant miRNA contributes to antibacterial resistance by repressing auxin signalling. Science 312:436-439.
32. Thines B, et al. (2007) JAZ repressor proteins are targets of the SCFCO11 complex during jasmonate signalling. Nature 448:661-662.
33. Li LC, et al. (2006) Small dsRNAs induce transcriptional activation in human cells. Proc Natl Acad Sci USA 103:17337-17342.
34. Gottesman S (2002) Stealth regulation: Biological circuits with small RNA switches. Genes Dev 16:2829-2842.
35. Hobert O (2004) Common logic of transcription factor and microRNA action. Trends Biochem Sci 29:462-468.
36. Mao YB, et al. (2007) Silencing a cotton bollworm P450 monooxygenase gene by plant-mediated RNAi impairs larval tolerance of gossypol. Nat Biotechnol 25:1307-1313.
37. Brennecke J, Stark A, Russell RB, Cohen SM (2005) Principles of microRNA-target recognition. PLoS Biol 3:e85.
38. Lewis BP, Burge CB, Bartel DP (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120:15-20.