-
1
-
-
18344418394
-
Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of the protein and DNA-binding partners
-
Helmann J, deHaseth P (1999) Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of the protein and DNA-binding partners. Biochemistry 38:5959-5967.
-
(1999)
Biochemistry
, vol.38
, pp. 5959-5967
-
-
Helmann, J.1
deHaseth, P.2
-
2
-
-
0033852409
-
UPs and downs in bacterial transcription initiation: The role of the α subunit of RNA polymerase in promoter recognition
-
Gourse R, Ross W, Gaal T (2000) UPs and downs in bacterial transcription initiation: The role of the α subunit of RNA polymerase in promoter recognition. Mol Microbiol 37:687-695.
-
(2000)
Mol Microbiol
, vol.37
, pp. 687-695
-
-
Gourse, R.1
Ross, W.2
Gaal, T.3
-
3
-
-
33744981130
-
rRNA promoter regulation by nonoptimal binding of σ region 1.2: An additional recognition element for RNA polymerase
-
Haugen S, et al. (2006) rRNA promoter regulation by nonoptimal binding of σ region 1.2: An additional recognition element for RNA polymerase. Cell 125:1069-1082.
-
(2006)
Cell
, vol.125
, pp. 1069-1082
-
-
Haugen, S.1
-
4
-
-
33745485665
-
A basal promoter element recognized by free RNA polymerase σ subunit determines promoter recognition by RNA polymerase holoenzyme
-
Feklistov A, et al. (2006) A basal promoter element recognized by free RNA polymerase σ subunit determines promoter recognition by RNA polymerase holoenzyme. Mol Cell 23:97-107.
-
(2006)
Mol Cell
, vol.23
, pp. 97-107
-
-
Feklistov, A.1
-
5
-
-
0018871116
-
Promoter sequence for stringent control of bacterial ribonucleic acid synthesis
-
Travers A (1980) Promoter sequence for stringent control of bacterial ribonucleic acid synthesis. J Bacteriol 141:973-976.
-
(1980)
J Bacteriol
, vol.141
, pp. 973-976
-
-
Travers, A.1
-
6
-
-
0021839173
-
Stringent control of bacterial transcription
-
Lamond A, Travers A (1985) Stringent control of bacterial transcription. Cell 41:6-8.
-
(1985)
Cell
, vol.41
, pp. 6-8
-
-
Lamond, A.1
Travers, A.2
-
7
-
-
0034674174
-
The G+C-rich discriminator region of the tyrT promoter antagonises the formation of stable preinitiation complexes
-
Pemberton I, Muskhelishvili G, Travers A, Buckle M (2000) The G+C-rich discriminator region of the tyrT promoter antagonises the formation of stable preinitiation complexes. J Mol Biol 299:859-864.
-
(2000)
J Mol Biol
, vol.299
, pp. 859-864
-
-
Pemberton, I.1
Muskhelishvili, G.2
Travers, A.3
Buckle, M.4
-
8
-
-
0023650609
-
Analysis of E. coli promoter sequences
-
Harley C, Reynolds R (1987) Analysis of E. coli promoter sequences. Nucleic Acids Res 15:2343-2361.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 2343-2361
-
-
Harley, C.1
Reynolds, R.2
-
9
-
-
0026612797
-
70 family: Sequence conservation and evolutionary relationships
-
70 family: Sequence conservation and evolutionary relationships. J Bacteriol 174:3843-3849.
-
(1992)
J Bacteriol
, vol.174
, pp. 3843-3849
-
-
Lonetto, M.1
Gribskov, M.2
Gross, C.3
-
11
-
-
0037123602
-
Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex
-
Murakami K, Masuda S, Campbell E, Muzzin O, Darst S (2002) Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex. Science 296:1285-1290.
-
(2002)
Science
, vol.296
, pp. 1285-1290
-
-
Murakami, K.1
Masuda, S.2
Campbell, E.3
Muzzin, O.4
Darst, S.5
-
12
-
-
0037123659
-
Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 Å resolution
-
Murakami K, Masuda S, Darst S (2002) Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 Å resolution. Science 296:1280-1284.
-
(2002)
Science
, vol.296
, pp. 1280-1284
-
-
Murakami, K.1
Masuda, S.2
Darst, S.3
-
13
-
-
0037071844
-
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution
-
Vassylyev D, et al. (2002) Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution. Nature 417:712-719.
-
(2002)
Nature
, vol.417
, pp. 712-719
-
-
Vassylyev, D.1
-
14
-
-
1342345189
-
Catabolite activator protein: DNA binding and transcription activation
-
Lawson C, et al. (2004) Catabolite activator protein: DNA binding and transcription activation. Curr Opin Struct Biol 14:10-20.
-
(2004)
Curr Opin Struct Biol
, vol.14
, pp. 10-20
-
-
Lawson, C.1
-
15
-
-
2042475439
-
Structural basis for transcription regulation by alarmone ppGpp
-
Artsimovitch I, et al. (2004) Structural basis for transcription regulation by alarmone ppGpp. Cell 117:299-310.
-
(2004)
Cell
, vol.117
, pp. 299-310
-
-
Artsimovitch, I.1
-
16
-
-
33847243639
-
Region 1.2 of the RNA polymerase σ subunit controls recognition of the -10 promoter element
-
Zenkin N, et al. (2007) Region 1.2 of the RNA polymerase σ subunit controls recognition of the -10 promoter element. EMBO J 26:955-964.
-
(2007)
EMBO J
, vol.26
, pp. 955-964
-
-
Zenkin, N.1
-
17
-
-
0030979415
-
Photocross-linking of nucleic acids to associated proteins
-
Meisenheimer K, Koch T (1997) Photocross-linking of nucleic acids to associated proteins. Crit Rev Biochem Mol Biol 32:101-140.
-
(1997)
Crit Rev Biochem Mol Biol
, vol.32
, pp. 101-140
-
-
Meisenheimer, K.1
Koch, T.2
-
18
-
-
0025812805
-
Factor-independent activation of Escherichia coli rRNA transcription. II. Characterization of complexes of rrnB P1 promoters containing or lacking the upstream activator region with Escherichia coli RNA polymerase
-
Newlands J, Ross W, Gosink K, Gourse R (1991) Factor-independent activation of Escherichia coli rRNA transcription. II. Characterization of complexes of rrnB P1 promoters containing or lacking the upstream activator region with Escherichia coli RNA polymerase. J Mol Biol 220:569-583.
-
(1991)
J Mol Biol
, vol.220
, pp. 569-583
-
-
Newlands, J.1
Ross, W.2
Gosink, K.3
Gourse, R.4
-
19
-
-
0025740392
-
Factor-independent activation of Escherichia coli rRNA transcription. I. Kinetic analysis of the roles of the upstream activator region and supercoiling on transcription of the rrnB P1 promoter in vitro
-
Leirmo S, Gourse R (1991) Factor-independent activation of Escherichia coli rRNA transcription. I. Kinetic analysis of the roles of the upstream activator region and supercoiling on transcription of the rrnB P1 promoter in vitro. J Mol Biol 220:555-568.
-
(1991)
J Mol Biol
, vol.220
, pp. 555-568
-
-
Leirmo, S.1
Gourse, R.2
-
20
-
-
0029845977
-
Distortion in the spacer region of Pm during activation of middle transcription of phage Mu
-
Artsimovitch I, Kahmeyer-Gabbe M, Howe M (1996) Distortion in the spacer region of Pm during activation of middle transcription of phage Mu. Proc Natl Acad Sci USA 93:9408-9413.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 9408-9413
-
-
Artsimovitch, I.1
Kahmeyer-Gabbe, M.2
Howe, M.3
-
21
-
-
0028177303
-
DNA recognition by β-sheets in the Arc repressor-operator crystal structure
-
Raumann B, Rould M, Pabo C, Sauer R (1994) DNA recognition by β-sheets in the Arc repressor-operator crystal structure. Nature 367:754-757.
-
(1994)
Nature
, vol.367
, pp. 754-757
-
-
Raumann, B.1
Rould, M.2
Pabo, C.3
Sauer, R.4
-
22
-
-
0031718377
-
The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA
-
Gao Y, et al. (1998) The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA. Nat Struct Biol 5:782-786.
-
(1998)
Nat Struct Biol
, vol.5
, pp. 782-786
-
-
Gao, Y.1
-
23
-
-
0033485515
-
The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for nonsequence-specific DNA recognition
-
Murphy F, Sweet R, Churchill M (1999) The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for nonsequence-specific DNA recognition. EMBO J 18:6610-6618.
-
(1999)
EMBO J
, vol.18
, pp. 6610-6618
-
-
Murphy, F.1
Sweet, R.2
Churchill, M.3
-
25
-
-
0018867360
-
-
Siebenlist U, Simpson R, Gilbert W (1980) E. coli RNA polymerase interacts homologously with two different promoters. Cell 20:269-281.
-
Siebenlist U, Simpson R, Gilbert W (1980) E. coli RNA polymerase interacts homologously with two different promoters. Cell 20:269-281.
-
-
-
-
26
-
-
0030576519
-
Base-specific recognition of the nontemplate strand of promoter DNA by E. coli RNA polymerase
-
Roberts C, Roberts J (1996) Base-specific recognition of the nontemplate strand of promoter DNA by E. coli RNA polymerase. Cell 86:495-501.
-
(1996)
Cell
, vol.86
, pp. 495-501
-
-
Roberts, C.1
Roberts, J.2
-
27
-
-
34547113065
-
Strand opening-deficient Escherichia coli RNA polymerase facilitates investigation of closed complexes with promoter DNA: Effects of DNA sequence and temperature
-
Cook V, deHaseth P (2007) Strand opening-deficient Escherichia coli RNA polymerase facilitates investigation of closed complexes with promoter DNA: Effects of DNA sequence and temperature. J Biol Chem 282:21319-21326.
-
(2007)
J Biol Chem
, vol.282
, pp. 21319-21326
-
-
Cook, V.1
deHaseth, P.2
-
29
-
-
0038522852
-
An intersubunit contact stimulating transcription initiation by E coli RNA polymerase: Interaction of the α C-terminal domain and σ region 4
-
Ross W, Schneider D, Paul B, Mertens A, Gourse R (2003) An intersubunit contact stimulating transcription initiation by E coli RNA polymerase: Interaction of the α C-terminal domain and σ region 4. Genes Dev 17:1293-1307.
-
(2003)
Genes Dev
, vol.17
, pp. 1293-1307
-
-
Ross, W.1
Schneider, D.2
Paul, B.3
Mertens, A.4
Gourse, R.5
|