메뉴 건너뛰기




Volumn 16, Issue 2, 2008, Pages 149-160

SIMONE: A realistic neural network simulator to reproduce MEA-based recordings

Author keywords

American cockroach; Extracellular; Integrate and fire; Multielectrode array (MEA); Noise; SIMONE; Simulation; Spike detection; Spike sorting; SpikeOMatic

Indexed keywords

ALGORITHMS; COMPUTER SIMULATION; DATA COMPRESSION; PROBABILITY DISTRIBUTIONS;

EID: 42049121981     PISSN: 15344320     EISSN: None     Source Type: Journal    
DOI: 10.1109/TNSRE.2007.914467     Document Type: Article
Times cited : (4)

References (39)
  • 1
    • 29044441759 scopus 로고    scopus 로고
    • A three-dimensional neural recording microsystem with implantable data compression circuitry
    • Dec
    • R. Olsson and K. Wise, "A three-dimensional neural recording microsystem with implantable data compression circuitry," IEEE J. Solid-State Circuits, vol. 40, no. 12, pp. 2796-2804, Dec. 2005.
    • (2005) IEEE J. Solid-State Circuits , vol.40 , Issue.12 , pp. 2796-2804
    • Olsson, R.1    Wise, K.2
  • 2
    • 80055101086 scopus 로고    scopus 로고
    • Contribution à létude et à la réalisation dun système électronique de mesure et excitation de tissu nerveux à matrices de microélectrodes,
    • Ph.D. dissertation, Institut National des Sciences Appliquées de Lyon, Lyon, France, Sep
    • C. Moulin, "Contribution à létude et à la réalisation dun système électronique de mesure et excitation de tissu nerveux à matrices de microélectrodes," Ph.D. dissertation, Institut National des Sciences Appliquées de Lyon, Lyon, France, Sep. 2006.
    • (2006)
    • Moulin, C.1
  • 3
    • 2442708539 scopus 로고    scopus 로고
    • Wireless implantable microsystems: High-density electronic interfaces to the nervous system
    • Jan
    • K. Wise, D. Anderson, J. Hetke, D. Kipke, and K. Najafi, "Wireless implantable microsystems: High-density electronic interfaces to the nervous system," Proc. IEEE, vol. 92, no. 1, pp. 76-97, Jan. 2004.
    • (2004) Proc. IEEE , vol.92 , Issue.1 , pp. 76-97
    • Wise, K.1    Anderson, D.2    Hetke, J.3    Kipke, D.4    Najafi, K.5
  • 4
    • 42049114358 scopus 로고    scopus 로고
    • A tool for synthesizing spike trains with realistic interference
    • Aug
    • L. S. Smith and N. Mtetwa, "A tool for synthesizing spike trains with realistic interference," J. Neurosci. Methods, Aug. 2006.
    • (2006) J. Neurosci. Methods
    • Smith, L.S.1    Mtetwa, N.2
  • 6
    • 0031571202 scopus 로고    scopus 로고
    • The neuron simulation environment
    • Aug
    • M. L. Hines and N. T. Carnevale, "The neuron simulation environment.," Neural. Comput., vol. 9, no. 6, pp. 1179-1209, Aug. 1997.
    • (1997) Neural. Comput , vol.9 , Issue.6 , pp. 1179-1209
    • Hines, M.L.1    Carnevale, N.T.2
  • 7
    • 0035080096 scopus 로고    scopus 로고
    • NEURON: A tool for neuroscientists
    • Apr
    • M. Hines and N. Carnevale, "NEURON: A tool for neuroscientists, " Neuroscientist, vol. 7, no. 2, pp. 123-135, Apr. 2001.
    • (2001) Neuroscientist , vol.7 , Issue.2 , pp. 123-135
    • Hines, M.1    Carnevale, N.2
  • 8
    • 0346365195 scopus 로고    scopus 로고
    • Spikenet: An event-driven simulation package for modelling large networks of spiking neurons
    • Nov
    • A. Delorme and S. J. Thorpe, "Spikenet: An event-driven simulation package for modelling large networks of spiking neurons.," Network, vol. 14, no. 4, pp. 613-627, Nov. 2003.
    • (2003) Network , vol.14 , Issue.4 , pp. 613-627
    • Delorme, A.1    Thorpe, S.J.2
  • 9
    • 33745825707 scopus 로고    scopus 로고
    • An event-driven framework for the simulation of networks of spiking neurons
    • Bruges, Belgium
    • O. Rochel and D. Martinez, "An event-driven framework for the simulation of networks of spiking neurons," in 11th Eur. Symp. Artif.Neural Networks (ESANN'03), Bruges, Belgium, 2003.
    • (2003) 11th Eur. Symp. Artif.Neural Networks (ESANN'03)
    • Rochel, O.1    Martinez, D.2
  • 10
    • 2442710346 scopus 로고    scopus 로고
    • Evaluation of spike-detection algorithms fora brain-machine interface application
    • Jun
    • I. Obeid and P. Wolf, "Evaluation of spike-detection algorithms fora brain-machine interface application," IEEE Trans. Biomed. Eng., vol. 51, no. 6, pp. 905-911, Jun. 2004.
    • (2004) IEEE Trans. Biomed. Eng , vol.51 , Issue.6 , pp. 905-911
    • Obeid, I.1    Wolf, P.2
  • 12
    • 33644857809 scopus 로고    scopus 로고
    • Online detection and sorting of extracellularly recorded action potentials in human medial temporal lobe recordings, in vivo
    • Jun
    • U. Rutishauser, E. M. Schuman, and A. N. Mamelak, "Online detection and sorting of extracellularly recorded action potentials in human medial temporal lobe recordings, in vivo.," J. Neurosci. Methods, vol. 154, no. 1-2, pp. 204-224, Jun. 2006.
    • (2006) J. Neurosci. Methods , vol.154 , Issue.1-2 , pp. 204-224
    • Rutishauser, U.1    Schuman, E.M.2    Mamelak, A.N.3
  • 13
    • 38049082802 scopus 로고    scopus 로고
    • SIMONE: A new simulation engine of realistic MEA-based extracellular measurements
    • A. Stett, Ed, Stuttgart, Germany, Jul
    • R. Escolá, C. Pouzat, B. Yvert, I. Magnin, and R. Guillemaud, "SIMONE: A new simulation engine of realistic MEA-based extracellular measurements," in Proc. MEA Meeting 2006, A. Stett, Ed., Stuttgart, Germany, Jul. 2006, pp. 71-72.
    • (2006) Proc. MEA Meeting 2006 , pp. 71-72
    • Escolá, R.1    Pouzat, C.2    Yvert, B.3    Magnin, I.4    Guillemaud, R.5
  • 14
    • 42049108726 scopus 로고    scopus 로고
    • R: A Language and Environment for Statistical Computing R Development Core Team, R Foundation for Statistical Computing. Vienna, Austria, 2006.
    • R: A Language and Environment for Statistical Computing R Development Core Team, R Foundation for Statistical Computing. Vienna, Austria, 2006.
  • 16
    • 42049089043 scopus 로고    scopus 로고
    • V. V. Uteshev, A vision of synaptic transmission between central neurons, Ph.D. dissertation, Dept. Physiol., Univ. Toronto, Toronto, Canada, 1997.
    • V. V. Uteshev, "A vision of synaptic transmission between central neurons," Ph.D. dissertation, Dept. Physiol., Univ. Toronto, Toronto, Canada, 1997.
  • 17
    • 0032743116 scopus 로고    scopus 로고
    • Interaction between spike waveform classification and temporal sequence detection
    • Dec
    • M. C. Quirk and M. A. Wilson, "Interaction between spike waveform classification and temporal sequence detection," J. Neurosci. Methods, vol. 94, no. 1, pp. 41-52, Dec. 1999.
    • (1999) J. Neurosci. Methods , vol.94 , Issue.1 , pp. 41-52
    • Quirk, M.C.1    Wilson, M.A.2
  • 18
    • 9744239998 scopus 로고    scopus 로고
    • Maximum likelihood estimation of a stochastic integrate-and-fire neural encoding model
    • Dec
    • L. Paninski, J. W. Pillow, and E. P. Simoncelli, "Maximum likelihood estimation of a stochastic integrate-and-fire neural encoding model," Neural. Comput., vol. 16, no. 12, pp. 2533-2561, Dec. 2004.
    • (2004) Neural. Comput , vol.16 , Issue.12 , pp. 2533-2561
    • Paninski, L.1    Pillow, J.W.2    Simoncelli, E.P.3
  • 20
    • 0037207286 scopus 로고    scopus 로고
    • Using noise signature to optimize spike-sorting and to assess neuronal classification quality
    • Dec
    • C. Pouzat, O. Mazor, and G. Laurent, "Using noise signature to optimize spike-sorting and to assess neuronal classification quality.," J. Neurosci. Methods, vol. 122, no. 1, pp. 43-57, Dec. 2002.
    • (2002) J. Neurosci. Methods , vol.122 , Issue.1 , pp. 43-57
    • Pouzat, C.1    Mazor, O.2    Laurent, G.3
  • 21
    • 0033928411 scopus 로고    scopus 로고
    • Accuracy of tetrode spike separation as determined by simultaneous intracellular and extracellular measurements
    • July
    • K. D. Harris, D. A. Henze, J. Csicsvari, H. Hirase, and G. Buzsaki, "Accuracy of tetrode spike separation as determined by simultaneous intracellular and extracellular measurements," J. Neurophysiol., vol. 84, no. 1, pp. 401-414, July 2000.
    • (2000) J. Neurophysiol , vol.84 , Issue.1 , pp. 401-414
    • Harris, K.D.1    Henze, D.A.2    Csicsvari, J.3    Hirase, H.4    Buzsaki, G.5
  • 23
    • 33646174233 scopus 로고    scopus 로고
    • On the origin of the extracellular action potential waveform: A modeling study
    • Feb
    • C. Gold, D. A. Henze, C. Koch, and G. Buzsaki, "On the origin of the extracellular action potential waveform: A modeling study," J. Neurophysiol., vol. 95, no. 5, pp. 3113-3128, Feb. 2006.
    • (2006) J. Neurophysiol , vol.95 , Issue.5 , pp. 3113-3128
    • Gold, C.1    Henze, D.A.2    Koch, C.3    Buzsaki, G.4
  • 24
    • 0033863464 scopus 로고    scopus 로고
    • Multi-unit recordings reveal context-dependent modulation of synchrony in odor-specific neural ensembles
    • Sep
    • T. A. Christensen, V. M. Pawlowski, H. Lei, and J. G. Hildebrand, "Multi-unit recordings reveal context-dependent modulation of synchrony in odor-specific neural ensembles," Nat. Neurosci., vol. 3, no. 9, pp. 927-931, Sep. 2000.
    • (2000) Nat. Neurosci , vol.3 , Issue.9 , pp. 927-931
    • Christensen, T.A.1    Pawlowski, V.M.2    Lei, H.3    Hildebrand, J.G.4
  • 25
    • 0017616238 scopus 로고
    • A neuroanatomical study on the organization of the central antennal pathways in insects
    • Jan
    • K. D. Ernst, J. Boeckh, and V. Boeckh, "A neuroanatomical study on the organization of the central antennal pathways in insects," Cell Tissue Res., vol. 176, no. 3, pp. 285-306, Jan. 1977.
    • (1977) Cell Tissue Res , vol.176 , Issue.3 , pp. 285-306
    • Ernst, K.D.1    Boeckh, J.2    Boeckh, V.3
  • 26
    • 0027392775 scopus 로고
    • Synaptic organization and development of the antennal lobe in insects
    • Feb
    • J. Boeckh and L. P. Tolbert, "Synaptic organization and development of the antennal lobe in insects," Microsc. Res. Tech., vol. 24, no. 3, pp. 260-280, Feb. 1993.
    • (1993) Microsc. Res. Tech , vol.24 , Issue.3 , pp. 260-280
    • Boeckh, J.1    Tolbert, L.P.2
  • 27
    • 0027497646 scopus 로고
    • Connections between the deutocerebrum and the protocerebrum, and neuroanatomy of several classes of deutocerebral projection neurons in the brain of male Periplaneta americana
    • Mar
    • D. Malun, U. Waldow, D. Kraus, and J. Boeckh, "Connections between the deutocerebrum and the protocerebrum, and neuroanatomy of several classes of deutocerebral projection neurons in the brain of male Periplaneta americana," J. Comp. Neurol., vol. 329, no. 2, pp. 143-162, Mar. 1993.
    • (1993) J. Comp. Neurol , vol.329 , Issue.2 , pp. 143-162
    • Malun, D.1    Waldow, U.2    Kraus, D.3    Boeckh, J.4
  • 28
    • 0029950854 scopus 로고    scopus 로고
    • Temporal representations of odors in an olfactory network
    • Jun
    • G. Laurent, M. Wehr, and H. Davidowitz, "Temporal representations of odors in an olfactory network," J. Neurosci., vol. 16, no. 12, pp. 3837-3847, Jun. 1996.
    • (1996) J. Neurosci , vol.16 , Issue.12 , pp. 3837-3847
    • Laurent, G.1    Wehr, M.2    Davidowitz, H.3
  • 29
    • 0032451826 scopus 로고    scopus 로고
    • Responses of cockroach antennal lobe projection neurons to pulsatile olfactory stimuli
    • Nov
    • W. C. Lemon and W. M. Getz, "Responses of cockroach antennal lobe projection neurons to pulsatile olfactory stimuli," Ann. NY Acad. Sci., vol. 855, pp. 517-520, Nov. 1998.
    • (1998) Ann. NY Acad. Sci , vol.855 , pp. 517-520
    • Lemon, W.C.1    Getz, W.M.2
  • 30
    • 42049098941 scopus 로고    scopus 로고
    • Quantitative analysis and models of projection neurons responses to odours in the first olfactory relay of an insect, the cockroach Periplaneta americana
    • Vienna, Austria, Jul
    • A. Chaffiol, N. Lindeman, P. Kloppenburg, and C. Pouzat, "Quantitative analysis and models of projection neurons responses to odours in the first olfactory relay of an insect, the cockroach Periplaneta americana," in 5th Forum Eur. Neurosci., Vienna, Austria, Jul. 2006, vol. 3.
    • (2006) 5th Forum Eur. Neurosci , vol.3
    • Chaffiol, A.1    Lindeman, N.2    Kloppenburg, P.3    Pouzat, C.4
  • 31
    • 2442479355 scopus 로고    scopus 로고
    • Improved spike-sorting by modeling firing statistics and burst-dependent spike amplitude attenuation: A markov chain monte carlo approach
    • Jun
    • C. Pouzat, M. Delescluse, P. Viot, and J. Diebolt, "Improved spike-sorting by modeling firing statistics and burst-dependent spike amplitude attenuation: A markov chain monte carlo approach," J. Neurophysiol., vol. 91, no. 6, pp. 2910-2928, Jun. 2004.
    • (2004) J. Neurophysiol , vol.91 , Issue.6 , pp. 2910-2928
    • Pouzat, C.1    Delescluse, M.2    Viot, P.3    Diebolt, J.4
  • 32
    • 42049096654 scopus 로고    scopus 로고
    • Radiation protection standard, Exposure limits for electric & magnetic Fields, 0 hz to 3 khz Australian Radiation Protection Nuclear Safety Agency, Tech. Rep
    • Radiation protection standard - Exposure limits for electric & magnetic Fields - 0 hz to 3 khz Australian Radiation Protection Nuclear Safety Agency, Tech. Rep., 2007.
    • (2007)
  • 33
    • 0023970658 scopus 로고
    • Ionic currents in neurones cultured from embryonic cockroach brains
    • Mar
    • B. N. Christensen, Y. Larmet, T. Shimahara, D. Beadle, and Y. Pichon, "Ionic currents in neurones cultured from embryonic cockroach brains," J. Exp. Biol., vol. 135, pp. 193-214, Mar. 1988.
    • (1988) J. Exp. Biol , vol.135 , pp. 193-214
    • Christensen, B.N.1    Larmet, Y.2    Shimahara, T.3    Beadle, D.4    Pichon, Y.5
  • 34
    • 0032526953 scopus 로고    scopus 로고
    • Electrophysiological development of central neurons in the drosophila embryo
    • Jun
    • R. A. Baines and M. Bate, "Electrophysiological development of central neurons in the drosophila embryo," J. Neurosci., vol. 18, no. 12, pp. 4673-4683, Jun. 1998.
    • (1998) J. Neurosci , vol.18 , Issue.12 , pp. 4673-4683
    • Baines, R.A.1    Bate, M.2
  • 35
    • 0345405445 scopus 로고    scopus 로고
    • Quantal analysis based on density estimation
    • Dec
    • C. Stricker and S. J. Redman, "Quantal analysis based on density estimation," J. Neurosci. Methods, vol. 130, no. 2, pp. 159-171, Dec. 2003.
    • (2003) J. Neurosci. Methods , vol.130 , Issue.2 , pp. 159-171
    • Stricker, C.1    Redman, S.J.2
  • 36
    • 0003956816 scopus 로고
    • P. Hall, Ed. Englewood Cliffs, NJ: Prentice Hall
    • S. M. Kay, Modern Spectral Estimation, P. Hall, Ed. Englewood Cliffs, NJ: Prentice Hall, 1988.
    • (1988) Modern Spectral Estimation
    • Kay, S.M.1
  • 37
    • 0016355478 scopus 로고
    • A new look at the statistical model identification
    • H. Akaike, "A new look at the statistical model identification, " IEEE Trans. on Automatic Control, vol. 19, pp. 716-723, 1974.
    • (1974) IEEE Trans. on Automatic Control , vol.19 , pp. 716-723
    • Akaike, H.1
  • 39
    • 0001457509 scopus 로고
    • Some methods for classification and analysis of multivariate observations
    • J. B. MacQueen, "Some methods for classification and analysis of multivariate observations," in Proc. 5th Berkeley Symp., 1967, pp. 281-297.
    • (1967) Proc. 5th Berkeley Symp , pp. 281-297
    • MacQueen, J.B.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.