Structure of xylogalacturonan fragments from watermelon cell-wall pectin. Endopolygalacturonase can accommodate a xylosyl residue on the galacturonic acid just following the hydrolysis site

Carbohydrate Research

Volumn 343, Issue 7, 2008, Pages 1212-1221

  Mort, Andrew ^a   Zheng, Yun ^a   Qiu, Feng ^b   Nimtz, Manfred ^c   Bell Eunice, Gianna ^a  

^a OKLAHOMA STATE UNIVERSITY   (United States)

^b CITY UNIVERSITY OF NEW YORK   (United States)

^c HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

Author keywords

Endopolygalacturonase; NMR spectroscopy; Specificity; Structure; Watermelon; Xylogalacturonan

Indexed keywords

ENDOPOLYGALACTURONASE; WATERMELON; XYLOGALACTURONAN;

CELL MEMBRANES; ENZYME ACTIVITY; FRUITS; HYDROLYSIS; ION EXCHANGE MEMBRANES; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; OLIGOSACCHARIDES;

CARBOHYDRATES;

CARBOHYDRATE DERIVATIVE; GALACTURONIC ACID; HOMOGALACTURONAN; OLIGOSACCHARIDE; PECTIN; PHOSPHATE; POLYGALACTURONASE; RHAMNOGALACTURONAN; UNCLASSIFIED DRUG; XYLOGALACTURONAN;

AMIDATION; ARTICLE; BINDING SITE; CARBOHYDRATE ANALYSIS; CELL WALL; ENZYME ACTIVITY; ENZYME STRUCTURE; HYDROLYSIS; ION EXCHANGE CHROMATOGRAPHY; MASS SPECTROMETRY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; WATERMELON;

ANTIDIARRHEALS; CARBOHYDRATE CONFORMATION; CARBOHYDRATE SEQUENCE; CELL WALL; CHROMATOGRAPHY, ION EXCHANGE; CITRULLUS; HEXURONIC ACIDS; HYDROLYSIS; MOLECULAR SEQUENCE DATA; OLIGOSACCHARIDES; PECTINS; POLYGALACTURONASE; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SUBSTRATE SPECIFICITY;

CITRULLUS LANATUS VAR. LANATUS;

EID: 41949105584     PISSN: 00086215     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.carres.2008.03.021     Document Type: Article

References (30)

1. Bouveng H.O. Acta Chem. Scand. 19 (1965) 953-963
2. Stephen A.M. In: Aspinall G.O. (Ed). The Polysaccharides Vol. 2 (1983), Academic Press, New York 97-193
3. Schols H.A., Bakx E.J., Schipper D., and Voragen A.G.J. Carbohydr. Res. 279 (1995) 265-279
4. Schols H.A., and Voragen A.G.J. Carbohydr. Res. 256 (1994) 83-95
5. Yu L., and Mort A.J. Prog. Biotechnol. 14 (1996) 79-88
6. Albersheim P., Darvill A.G., O'Neill M.A., Schols H.A., and Voragen A.G.J. Prog. Biotechnol. 14 (1996) 47-55
7. Kikuchi A., Edashige Y., Ishii T., and Satoh S. Planta 200 (1996) 369-372
8. Zandleven J., Sorensen S.O., Harholt J., Beldman G., Schols H.A., Scheller H.V., and Voragen A.J. Phytochemistry 68 (2007) 1219-1226
9. Mort A.J. In: Seymour G.B., and Knox J.P. (Eds). Pectins and their Manipulation (2002), Blackwell, Sheffield 30-51
10. Le Goff A., Renard C.M.G.C., Bonnin E., and Thibault J.F. Carbohydr. Polym. 45 (2001) 325-334
11. Nakamura A., Furuta H., Maeda H., Takao T., and Nagamatsu Y. Biosci., Biotechnol., Biochem. 66 (2002) 1155-1158
12. Rexová-Benková L. Eur. J. Biochem. 39 (1973) 109-115
13. Thibault J.F. Carbohydr. Polym. 3 (1983) 259-272
14. Mort A.J., and Chen E.M.W. Electrophoresis 17 (1996) 379-383
15. Bussink H.J.D., Burton F.P., Fraaye B.A., de Graaff L.H., and Visser J. Eur. J. Biochem. 208 (1992) 83-90
16. Pel H.J., de Winde J.H., Archer D.B., Dyer P.S., Hofmann G., Schaap P.J., Turner G., de Vries R.P., Albang R., Albermann K., Andersen M.R., Bendtsen J.D., Benen J.A.E., van den Berg M., Breestraat S., Caddick M.X., Contreras R., Cornell M., Coutinho P.M., Danchin E.G.J., Debets A.J.M., Dekker P., van Dijck P.W.M., van Dijk A., Dijkhuizen L., Driessen A.J.M., d'Enfert C., Geysens S., Goosen C., Groot G.S.P., de Groot P.W.J., Guillemette T., Henrissat B., Herweijer M., van den Hombergh J.P.T.W., van den Hondel C.A.M.J.J., van der Heijden R.T.J.M., van der Kaaij R.M., Klis F.M., Kools H.J., Kubicek C.P., van Kuyk P.A., Lauber J., Lu X., van der Maarel M.J.E.C., Meulenberg R., Menke H., Mortimer M.A., Nielsen J., Oliver S.G., Olsthoorn M., Pal K., van Peij N.N.M.E., Ram A.F.J., Rinas U., Roubos J.A., Sagt C.M.J., Schmoll M., Sun J., Ussery D., Varga J., Vervecken W., van de Vondervoort P.J.J., Wedler H., Woesten H.A.B., Zeng A.-P., van Ooyen A.J.J., Visser J., and Stam H. Nat. Biotechnol. 25 (2007) 221-231
17. Benen J.A.E., Kester H.C.M., and Visser J. Eur. J. Biochem. 259 (1999) 577-585
18. Parenicova L., Benen J.A.E., Kester H.C.M., and Visser J. Biochem. J. 345 (2000) 637-644
19. Zhan D., Qiu F., and Mort A.J. Carbohydr. Res. 330 (2001) 357-363
20. Bauer S., Vasu P., Persson S., Mort A.J., and Somerville C.R. Proc. Natl. Acad. Sci. U.S.A. 103 (2006) 11417-11422
21. Van der Vlugt-Bergmans C.J.B., Meeuwsen P.J.A., Voragen A.G.J., and Van Ooyen A.J.J. Appl. Environ. Microbiol. 66 (2000) 36-41
22. Zandleven J., Beldman G., Bosveld M., Benen J., and Voragen A. Biochem. J. 387 (2005) 719-725
23. Huber D.J. Phytochemistry 30 (1991) 2523-2527
24. Thomas J., and Mort A.J. Anal. Biochem. 223 (1994) 99-104
25. Delaglio F., Grzesiek S., Vuister G.W., Zhu G., Pfeifer J., and Bax A. J. Biomol. NMR 5 (1995) 277-293
26. Johnson B.A., and Blevins R.A. J. Biomol. NMR 4 (1994) 603-614
27. Zhang Z., Pierce M.L., and Mort A.J. Phytochemistry 68 (2007) 1094-1103
28. Nimtz M., Mort A., Domke T., Wray V., Zhang Y., Qiu F., Coplin D., and Geider K. Carbohydr. Res. 287 (1996) 59-76
29. Lo V.-M., Hahn M.G., and van Halbeck H. Carbohydr. Res. 255 (1994) 271-284
30. Perrone P., Hewage C.M., Sadler I.H., and Fry S.C. Phytochemistry 49 (1998) 1879-1890