-
1
-
-
0027179417
-
(A93) Synthesis and properties of oligodeoxynuleotides containing the analogue 2′-deoxy-4′-thiothymidine
-
Hancox, E.L., Connolly,B.A. and Walker,R.T. (A93) Synthesis and properties of oligodeoxynuleotides containing the analogue 2′-deoxy-4′-thiothymidine. Nucleic Acids Res., 21, 3485-3491.
-
Nucleic Acids Res
, vol.21
, pp. 3485-3491
-
-
Hancox, E.L.1
Connolly, B.A.2
Walker, R.T.3
-
2
-
-
0030789978
-
DNA containing 4′-thio-2′-deoxycytidine inhibits methylation by Hhal methyltransferase
-
Kumar,S., Horton,J.R., Jones,G.D., Walker,R.T., Roberts,R.J. and Cheng,X. (1997) DNA containing 4′-thio-2′-deoxycytidine inhibits methylation by Hhal methyltransferase. Nucleic Acids Res., 25 2773-2783.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 2773-2783
-
-
Kumar, S.1
Horton, J.R.2
Jones, G.D.3
Walker, R.T.4
Roberts, R.J.5
Cheng, X.6
-
3
-
-
0029963653
-
Investigation of some properties of oligodeoxynucleotides containing 4′-thio-2′-deoxynucleotides: Duplex hybridization and nuclease sensitivity
-
Jones,G.D., Lesnik,E.A., Owens,S.R., Risen,L.M. and Walker,R.T. (1996) Investigation of some properties of oligodeoxynucleotides containing 4′-thio-2′-deoxynucleotides: Duplex hybridization and nuclease sensitivity. Nucleic Acids Res., 24, 4117 -4122.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 4117-4122
-
-
Jones, G.D.1
Lesnik, E.A.2
Owens, S.R.3
Risen, L.M.4
Walker, R.T.5
-
4
-
-
0031579954
-
Duplax, and triplex-forming properties of 4′-thio-modified oligodeoxynucleotides
-
Jones,G.D., Altmann,K.-H., Huskeri,D. and Walker, R.T. (1997) Duplax, and triplex-forming properties of 4′-thio-modified oligodeoxynucleotides. Bioorg, Med. Chem. Lett., 7, 1275-1278.
-
(1997)
Bioorg, Med. Chem. Lett
, vol.7
, pp. 1275-1278
-
-
Jones, G.D.1
Altmann, K.-H.2
Huskeri, D.3
Walker, R.T.4
-
5
-
-
0028820184
-
4′-Thio-RNA synthesis of mixed base 4′-thio-oligoribonucleotides nuclease resistance, and base pairing properties with complementary single and double strand
-
Leydier,C., Bellon,L., Barascut,J.L., Morvan,F., Rayner,B. and, Imbach,J.L. (1995) 4′-Thio-RNA synthesis of mixed base 4′-thio-oligoribonucleotides nuclease resistance, and base pairing properties with complementary single and double strand. Antisense Res. Dev., 5, 167-174.
-
(1995)
Antisense Res. Dev
, vol.5
, pp. 167-174
-
-
Leydier, C.1
Bellon, L.2
Barascut, J.L.3
Morvan, F.4
Rayner, B.5
Imbach, J.L.6
-
6
-
-
26844449313
-
Practical synthesis of 2′-Deoxy-4′-thioribonucleosides: Substrates for the synthesis of 4′-ThioDNA
-
Inoue,N., Kaga,D., Minakawa,N. and Matsuda,A. (2005) Practical synthesis of 2′-Deoxy-4′-thioribonucleosides: Substrates for the synthesis of 4′-ThioDNA. J. Org. Chem., 70, 8597-8600.
-
(2005)
J. Org. Chem
, vol.70
, pp. 8597-8600
-
-
Inoue, N.1
Kaga, D.2
Minakawa, N.3
Matsuda, A.4
-
7
-
-
33746857804
-
Synthesis and properties of 4′-ThioDNA: Unexpected RNA-like behavior of 4′-ThioDNA
-
Inoue,N., Minakawa,N. and Matsuda,A. (2006) Synthesis and properties of 4′-ThioDNA: Unexpected RNA-like behavior of 4′-ThioDNA. Nucleic Acids Res., 34, 3476-3483.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 3476-3483
-
-
Inoue, N.1
Minakawa, N.2
Matsuda, A.3
-
8
-
-
0029963064
-
-
2, a synthetic DNA dodecamer duplex containing four 4′-thio-2′-deoxythymidine nucleotides. Nucleic Acids Res., 24, 951-961.
-
2, a synthetic DNA dodecamer duplex containing four 4′-thio-2′-deoxythymidine nucleotides. Nucleic Acids Res., 24, 951-961.
-
-
-
-
9
-
-
22844448221
-
-
Haeberli,P., Berger,I., Pallan,P.S. and Egli,M. Q005 Syntheses of 4′-thioribonucleosides and thermodynamic stability and Crystal structure of RNA oligomers with incorporated 4′-thiocytosine. Nucleic Acids Res., 33, 3965-3975.
-
Haeberli,P., Berger,I., Pallan,P.S. and Egli,M. Q005) Syntheses of 4′-thioribonucleosides and thermodynamic stability and Crystal structure of RNA oligomers with incorporated 4′-thiocytosine. Nucleic Acids Res., 33, 3965-3975.
-
-
-
-
10
-
-
0029400480
-
NMRpipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio,F Grzesiek S., Vuister,G.W., Zhu,G., Pfeifer,J. and Bax,A. (1995) NMRpipe: A multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR, 6, 277-293.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
12
-
-
0004040543
-
-
University of California, San Francisco
-
Goddard,T.D. and Kneller,D.G. (2006) SPARKY 3, University of California, San Francisco.
-
(2006)
SPARKY 3
-
-
Goddard, T.D.1
Kneller, D.G.2
-
13
-
-
0037904751
-
-
Matsugami,A., Kobayashi,S., Ouhashi,K., Uesugi.S., Yamamoto,R., Taira,K., Nishikawa,S., Kumar,P.K.R. and Katahira,M. (2003) Structural basis of the highly efficient trapping of the HIV Tat protein by an RNA aptamer. Structure, 11, 533-545.
-
Matsugami,A., Kobayashi,S., Ouhashi,K., Uesugi.S., Yamamoto,R., Taira,K., Nishikawa,S., Kumar,P.K.R. and Katahira,M. (2003) Structural basis of the highly efficient trapping of the HIV Tat protein by an RNA aptamer. Structure, 11, 533-545.
-
-
-
-
14
-
-
0035914469
-
An intramolecular quadruplex or (GGA)(4) triplet repeat. DNA with a G:G:G:G retrad and a G(:A):G(:A):G(:A):G heptad, and its dimeric interaction
-
Matsugami,A., Ouhashi,K., Kanagawa,M., Liu,H., Kanagawa, S., Uesugi,S. and Katahira,M. (2001) An intramolecular quadruplex or (GGA)(4) triplet repeat. DNA with a G:G:G:G retrad and a G(:A):G(:A):G(:A):G heptad, and its dimeric interaction. J. Mol. Biol., 313, 255-269.
-
(2001)
J. Mol. Biol
, vol.313
, pp. 255-269
-
-
Matsugami, A.1
Ouhashi, K.2
Kanagawa, M.3
Liu, H.4
Kanagawa, S.5
Uesugi, S.6
Katahira, M.7
-
15
-
-
0042847316
-
Intramolecular higher oder packing of parallel quadruplexes comprismig a. G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad of GGA triplet repeat DNA
-
Matsugami, A, Okuizumi, T., Uesugi,S. and Katahira,M. (2003) Intramolecular higher oder packing of parallel quadruplexes comprismig a. G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad of GGA triplet repeat DNA. J. Biol. Chem., 278, 28147-28153.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 28147-28153
-
-
Matsugami, A.1
Okuizumi, T.2
Uesugi, S.3
Katahira, M.4
-
16
-
-
0030156432
-
NMR investigation of RNA structure
-
Varani,G.,.Aboul-ela,F. and Allain,F.H.T. (1996) NMR investigation of RNA structure. Prog. Nucl. Magn. Reson. Spect., 29, 51-127.
-
(1996)
Prog. Nucl. Magn. Reson. Spect
, vol.29
, pp. 51-127
-
-
Varani, G.1
Aboul-ela, F.2
Allain, F.H.T.3
-
17
-
-
0034674037
-
Phosphorothioate substitution can substantially alter RNA conformation
-
Smith,J.S. and Nikonowicz,E.P. (2000) Phosphorothioate substitution can substantially alter RNA conformation. Biochemistry, 39, 5642-652.
-
(2000)
Biochemistry
, vol.39
, pp. 5642-5652
-
-
Smith, J.S.1
Nikonowicz, E.P.2
-
18
-
-
41849144485
-
-
Brünger,A.T, 1993 X-PLOR Version 3.1: A System for X-ray Crystallography and NMR. Yale Untiversity Press, New Haven
-
Brünger,A.T. (1993) X-PLOR Version 3.1: A System for X-ray Crystallography and NMR. Yale Untiversity Press, New Haven.
-
-
-
-
19
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger,A.T., Adams,P.D., Clore,G.M., DeLano,W.L., Gros,P., Grosse-Kunstleve,R.W., Jiang,J.S., Kuszewski,J., Nilges,M., Pannu,N.S. et al. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr., 54, 905-921.
-
(1998)
Acta Crystallogr. D Biol. Crystallogr
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
20
-
-
0013293280
-
The X-plor-NIH NMR molecular structure determination package
-
Schwieters,C.D., Kuszewski,J.J., Tjandra,N. and Clore,G.M. (2003) The X-plor-NIH NMR molecular structure determination package. J. Magn. Reson., 160, 65-73.
-
(2003)
J. Magn. Reson
, vol.160
, pp. 65-73
-
-
Schwieters, C.D.1
Kuszewski, J.J.2
Tjandra, N.3
Clore, G.M.4
-
21
-
-
0024058085
-
(1088) The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids
-
Lavery,R. and Sklenar,H. (1088) The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids. J. Biomol. Struct. Dyn., 6, 63-91.
-
J. Biomol. Struct. Dyn
, vol.6
, pp. 63-91
-
-
Lavery, R.1
Sklenar, H.2
-
22
-
-
0242396923
-
3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures
-
Lu,X.J. and Olson, W.K. (2003) 3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. Nucleic Acids Res., 31, 5108-5121.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 5108-5121
-
-
Lu, X.J.1
Olson, W.K.2
-
23
-
-
0029665675
-
Solution structures of DNA duplexes containing a DNA × RNA hybrid region, d(GG)r(AGAU)d(GAC) × d(GTCATCT(C) and d(CGGAGA)r(UGAC) × d(GTCATCTCC)
-
Nishizaki,T., Iwai,S., Ohkubo,T., Kojima,C., Nakamura,H., Kyogoku,Y. and Ohtsuka,E. (1996) Solution structures of DNA duplexes containing a DNA × RNA hybrid region, d(GG)r(AGAU)d(GAC) × d(GTCATCT(C) and d(CGGAGA)r(UGAC) × d(GTCATCTCC). Biochemistry, 35, 4016-4025.
-
(1996)
Biochemistry
, vol.35
, pp. 4016-4025
-
-
Nishizaki, T.1
Iwai, S.2
Ohkubo, T.3
Kojima, C.4
Nakamura, H.5
Kyogoku, Y.6
Ohtsuka, E.7
-
24
-
-
0027077877
-
1H NMR spectroscopy and X-ray crystallography
-
1H NMR spectroscopy and X-ray crystallography. J. Am. Chem. Soc., 114, 9936-9943.
-
(1992)
J. Am. Chem. Soc
, vol.114
, pp. 9936-9943
-
-
Koole, L.H.1
Plavec, J.2
Liu, H.3
Vincent, B.R.4
Dyson, M.R.5
Coe, P.L.6
Walker, R.T.7
Hardy, G.W.8
Rahim, S.G.9
Chattopadhyaya, J.10
-
25
-
-
49349134796
-
Conformations of nucleosides and nucleotides
-
Davies,D.B. (1978) Conformations of nucleosides and nucleotides. Prog. Nucl. Magn. Reson. Spectrosc., 12, 135-225.
-
(1978)
Prog. Nucl. Magn. Reson. Spectrosc
, vol.12
, pp. 135-225
-
-
Davies, D.B.1
-
26
-
-
0022773567
-
Solution structure of d-GAATTCGAATTC by 2D NMR. A new approach to determination of sugar geometries in DNA segments
-
Hosur,R.V., Ravikumar,M., Chary,K.V.R., Sheth,A, Govil,G., Zu-Kun,T. and Miles,H.T. (1986) Solution structure of d-GAATTCGAATTC by 2D NMR. A new approach to determination of sugar geometries in DNA segments. FEBS Lett., 205, 71-76.
-
(1986)
FEBS Lett
, vol.205
, pp. 71-76
-
-
Hosur, R.V.1
Ravikumar, M.2
Chary, K.V.R.3
Sheth, A.4
Govil, G.5
Zu-Kun, T.6
Miles, H.T.7
-
27
-
-
20444483055
-
The relationship between proton-proton NMR coupling constants and substituent electronegativities-I: An empirical generalization of the Karplus equation
-
Haasnoot,C.A.G., de Leeuw,F.A.A.M. and Altona,C. (1980) The relationship between proton-proton NMR coupling constants and substituent electronegativities-I: An empirical generalization of the Karplus equation. Tetrahedron, 36, 2783-2792.
-
(1980)
Tetrahedron
, vol.36
, pp. 2783-2792
-
-
Haasnoot, C.A.G.1
de Leeuw, F.A.A.M.2
Altona, C.3
-
28
-
-
84988109709
-
Nucleic acids and nuclear magnetic resonance
-
Van de Ven,F.J. and Hilbers,C.W. (1988) Nucleic acids and nuclear magnetic resonance. Eur. J. Biochem., 178, 1-38.
-
(1988)
Eur. J. Biochem
, vol.178
, pp. 1-38
-
-
Van de Ven, F.J.1
Hilbers, C.W.2
-
29
-
-
0026696172
-
Determination of nucleic acid backbone conformation by 1H NMR
-
Kim,S.G., Lin,L.J. and Reid,B.R. (1992) Determination of nucleic acid backbone conformation by 1H NMR. Biochemistry, 31, 3564-3574.
-
(1992)
Biochemistry
, vol.31
, pp. 3564-3574
-
-
Kim, S.G.1
Lin, L.J.2
Reid, B.R.3
-
32
-
-
0001440712
-
Determination of the Conformations of Nucleic Acids by Electronic CD
-
Fasman,G.D, ed, Plenum Press, NY, pp
-
Johnson,C.W. Jr. (1996) Determination of the Conformations of Nucleic Acids by Electronic CD. In Fasman,G.D. (ed). Circular Dichroism and the Conformational Analysis of Biomolecules, Plenum Press, NY, pp. 433-468.
-
(1996)
Circular Dichroism and the Conformational Analysis of Biomolecules
, pp. 433-468
-
-
Johnson Jr., C.W.1
-
33
-
-
0020692923
-
Ordered wattr structure around a B-DNA dodecamer. A quaatitative study
-
Kopka,M.L., Fratini,A.V., Drew,H.R. and Dickerson,R.E. (1983), Ordered wattr structure around a B-DNA dodecamer. A quaatitative study. J. Mol. Biol., 163, 129-146.
-
(1983)
J. Mol. Biol
, vol.163
, pp. 129-146
-
-
Kopka, M.L.1
Fratini, A.V.2
Drew, H.R.3
Dickerson, R.E.4
-
34
-
-
0016299918
-
Structural details of double-helix observed for DNAs containing alternating purine and pyrimidine sequences
-
Arnottt,S., Chandrasekaran,R., Hukins,D.W., Smith,P.J. and Watts,L. (1974) Structural details of double-helix observed for DNAs containing alternating purine and pyrimidine sequences. J. Mol. Biol., 15 523-533.
-
(1974)
J. Mol. Biol
, vol.15
, pp. 523-533
-
-
Arnottt, S.1
Chandrasekaran, R.2
Hukins, D.W.3
Smith, P.J.4
Watts, L.5
-
35
-
-
0034143043
-
1H MMR and ab initio MO study
-
1H MMR and ab initio MO study. J. Chem. Soc., Perkin Trans., 2, 255-262.
-
(2000)
J. Chem. Soc., Perkin Trans
, vol.2
, pp. 255-262
-
-
Crnugelj, M.1
Dukhan, D.2
Barascut, J.L.3
Imbach, J.L.4
Plavec, J.5
-
36
-
-
0042908606
-
NMR conformatiohal study reveals that S-C-N anomeric effect in thionucleosides is weaker than O-C-N anomeric effect in natural nucleosides
-
Crnugelj,M. and Plavec,J. (2001) NMR conformatiohal study reveals that S-C-N anomeric effect in thionucleosides is weaker than O-C-N anomeric effect in natural nucleosides. Croatica Chim. Acta., 74, 381-398.
-
(2001)
Croatica Chim. Acta
, vol.74
, pp. 381-398
-
-
Crnugelj, M.1
Plavec, J.2
-
37
-
-
0023046565
-
CD spectra and some properties of deoxyoligonucleotide duplexes having a CG terminus (nucleosides and nucleotides. Part 69)
-
Sato,M., Ono,A., Higuchi,H. and Ueda,F. (1986) CD spectra and some properties of deoxyoligonucleotide duplexes having a CG terminus (nucleosides and nucleotides. Part 69). Nucleic Acids Res., 14 1405-1416.
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 1405-1416
-
-
Sato, M.1
Ono, A.2
Higuchi, H.3
Ueda, F.4
-
39
-
-
0027159254
-
The crystal structures of EcoRV endonuclease, and of its complexes with cognate and non-cognate DNA fragments
-
Winkler,F.K., Banner,D.W., Oefner,C., Tsernoglou,D., Brown,R.S., Heathman,S.P., Bryan,R.K., Martin,P.D., Petratos,K. and Wilson,K.S. (1993) The crystal structures of EcoRV endonuclease, and of its complexes with cognate and non-cognate DNA fragments. EMBO J., 12, 1781-1795.
-
(1993)
EMBO J
, vol.12
, pp. 1781-1795
-
-
Winkler, F.K.1
Banner, D.W.2
Oefner, C.3
Tsernoglou, D.4
Brown, R.S.5
Heathman, S.P.6
Bryan, R.K.7
Martin, P.D.8
Petratos, K.9
Wilson, K.S.10
-
40
-
-
0019790241
-
Mapping tRNA structure in solutiod using double-strand-specific ribonuclease VI from cobra venom
-
Lockard,R.E. and Kumar,A. (1981) Mapping tRNA structure in solutiod using double-strand-specific ribonuclease VI from cobra venom. Nucleic Acids Res., 9, 5125-5140.
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 5125-5140
-
-
Lockard, R.E.1
Kumar, A.2
-
41
-
-
0020442509
-
Comparison of transfer ribonucleic acid structures using cobra venom and S1 endonucleases
-
Auron,P.E., Weber,L.D. and Rich,A. (1982) Comparison of transfer ribonucleic acid structures using cobra venom and S1 endonucleases. Biochemistry, 21, 4700-4706.
-
(1982)
Biochemistry
, vol.21
, pp. 4700-4706
-
-
Auron, P.E.1
Weber, L.D.2
Rich, A.3
-
42
-
-
0024425738
-
Deoxynucleotide-containing oligoribonucleotide duplexes: Stability and susceptibility to RNase VI and RNase H
-
Wyatt,J.R. and Walker,G.T. (1989) Deoxynucleotide-containing oligoribonucleotide duplexes: Stability and susceptibility to RNase VI and RNase H. Nucleic Acids Res., 17, 7833-7942.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 7833-7942
-
-
Wyatt, J.R.1
Walker, G.T.2
|