Preparation and utilization of microarrays

An Introduction to Toxicogenomics

Volumn , Issue , 2003, Pages 3-16

  Wildsmith, Sophie ^a   Spence, Fiona ^a  

^a GLAXOSMITHKLINE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 41849084665     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter

References (31)

1. Aardema, M.J. and MacGregor, J.T., Toxicology and genetic toxicology in the new era of “toxicoge-nomics”: impact of “-omics” technologies, Mutat. Res., 499(1), 13, 2002.
2. Liang, P. and Pardee, A.B., Differential display of human eukaryotic messenger RNA by means of the polymerase chain reaction, Science, 257, 967, 1992.
3. Velculesu, V.E., Zhang, L., Vogelstein, B., and Kinzler, K.W, Serial analysis of gene expression, Science 270, 484, 1995.
4. Granjeaud, S., Bertucci, F., and Jordan, B.R., Expression profiling: DNA arrays in many guises, Bioessays, 21, 781, 1999.
5. Schena, M., Shalon, D., Davis, R.W., and Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray, Science, 270, 467, 1995.
6. Ginot, F., Oligonucleotide micro-arrays for identification of unknown mutations: how far from reality?, Hum. Mut., 10(1), 1, 1997.
7. Lipshutz, R.J., Fodor, S.P., Gingeras, T.R., and Lockhart, D.J., High density synthetic oligonucleotide arrays, Suppl. Nat. Genet., 21(suppl. 1), 20, 1999.
8. van Hal, N.L., Vorst, O., van Houwelingen, A.M., Kok, E.J., Peijnenburg, A., Aharoni, A., van Tunen, A.J., and Keijer, J., The application of DNA microarrays in gene expression analysis, J. Biotechnol., 78(3), 271, 2000.
9. De Risi, J.L., Vishwanath, R.I., and Brown, P.O., Exploring the metabolic and genetic control of gene expression on a genomic scale, Science, 278, 680, 1997.
10. Lennon, G., Auffray, C., Polymeropoulos, M., and Soares, M.B. The Image Consortium: an integrated molecular analysis of genomes and their expression, Genomics, 33, 151, 1996 (I.M.A.G.E. consortium, http://www.bio.llnl.gov/bbrp/image/image.html).
11. Heller, R.A., Schena, M., Chai, A., Shalon, D., Bedilion T., Gilmore, J., Woolley, D.E., and Davis, R.W., Discovery and analysis of inflammatory disease-related genes using cDNA microarrays, Proc. Natl. Acad. Sci. USA, 94(6), 2150, 1997.
12. Bowtell, D.L., Options available — from start to finish — for obtaining expression data by microarray, Nat. Genet. Suppl., 21, 25, 1999.
13. Okamoto, R., Suzuki, T., and Yamamoto, N., Microarray fabrication with covalent attachment of DNA using bubble jet technology, Nat. Biotechnol., 18, 438, 2000.
14. Lemmo, A.V., Rose, D.J., and Tisone, T.C., Inkjet dispensing technology: applications in drug discovery, Curr. Opin. Biotechnol., 9, 615, 1998.
15. DeRisi, J., Penland, L., Brown, P.O., Bittner, M.L., Meltzer, P.S., Ray, M., Chen, Y., Su, Y.A., and Trent, J.M., Use of cDNA microarray to analyse gene expression patterns in human cancer, Nat. Genet., 14, 457, 1996.
16. Schena, M., Genome analysis with gene expression microarrays, Bioassays, 18(5), 427, 1996.
17. Cheung, V.G., Morley, M., Aguilar, F., Massimi, A., Kucherlapati, R., and Childs, G., Making and reading microarrays, Nat. Genet. Suppl., 21, 15, 1999.
18. Watson, A., Mazumder, A., Stewart, M., and Balasubramanian, S., Technology for microarray analysis of gene expression, Curr. Opin. Biotechnol., 9(6), 609, 1998.
19. Hughes, T.R., Mao, M., Jones, A.R., Burchard, J., Marton, M.J., Shannon, K.W., Lefkowitz, S.M., Ziman, M., Schelter, J.M., Meyer, M.R., Kobayashi, S., Davis, C., Dai, H., He, Y.D., Stephaniants, S.B., Cavet, G., Walker, W.L., West, A., Coffey, E., Shoemaker, D.D., Stoughton, R., Blanchard, A.P., Friend, S.H., and Linsley, P.S., Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer, Nat. Biotechnol., 19(4), 342, 2001.
20. Beaucage, S.L., Strategies in the preparation of DNA oligonucleotide arrays for diagnostic applications, Curr. Med. Chem., 8(10), 1213, 2001.
21. http://cmgm.stanford.edu/pbrown.
22. Schena, M., Shalon, D., Heller, R., Chai, A., Brown, P.O., and Davis, R.W., Parallel human genome analysis: microarray-based expression monitoring of 1000 genes, Proc. Natl. Acad. Sci. USA, 93, 10614, 1996.
23. Duggan, D.J., Bittner, M., Chen, Y., Meltzer, P., and Trent, J.M., Expression profiling using cDNA microarrays, Nat. Genet. Suppl., 21, 10, 1999.
24. Van Gelder, R.N., Von Zastrow, M.E., Yool, A., Dement, W.C., Barchas, J.D., and Eberwine, J.H., Amplified RNA synthesized from limited quantities of heterogeneous cDNA, Proc. Natl. Acad. Sci. USA, 87, 1663, 1990.
25. Wildsmith, S.E., Archer, G.E., Winkley, A.J., Lane, P.W., and Bugelski, P.J., Maximisation of signal derived from cDNA microarrays, Biotechniques, 30(1), 203, 2001.
26. Palmer T., in Understanding Enzymes, Wiseman, A., Ed., John Wiley & Sons, New York, p. 342.
27. TeleChem, http://www.hooked.net/~telechem.
28. Clontech, http://www.clontech.com.
29. Hames, B.D. and Higgins, S.J., Eds., Gene Probes 2: A Practical Approach, IRL Press, Oxford, 1995.
30. BioInsights, Redwood City, CA.
31. Merchant, M. and Weinberger, S.R., Recent advancements in surface-enhanced laser desorption/ionization time-of-flight mass spectrometry, Electrophoresis, 21, 1164, 2000.