Distinct chromatin modulators regulate the formation of accessible and repressive chromatin at the fission yeast recombination hotspot ade6-M26

Molecular Biology of the Cell

Volumn 19, Issue 3, 2008, Pages 1162-1173

  Hirota, Kouji ^a,b   Mizuno, Ken Ichi ^c   Shibata, Takehiko ^a,d   Ohta, Kunihiro ^a,b  

^a Japan Science and Technology Agency   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

^c UNIVERSITY OF SUSSEX   (United Kingdom)

^d YOKOHAMA CITY UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATING TRANSCRIPTION FACTOR; ACTIVATING TRANSCRIPTION FACTOR 1; CYCLIC AMP RESPONSIVE ELEMENT BINDING PROTEIN; HISTONE ACETYLTRANSFERASE; HISTONE H3; PER1 PROTEIN; PROTEIN ADCR; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

ACETYLATION; ARTICLE; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMATIN STRUCTURE; CONTROLLED STUDY; GENE LOCUS; MEIOSIS; NONHUMAN; OSMOTIC STRESS; PRIORITY JOURNAL; PROTEIN FUNCTION; SCHIZOSACCHAROMYCES POMBE; TRANSCRIPTION INITIATION; TRANSCRIPTION INITIATION SITE; TRANSCRIPTION REGULATION; YEAST;

ACETYLATION; ALLELES; CHROMATIN; CHROMATIN ASSEMBLY AND DISASSEMBLY; GENE DELETION; HISTONE ACETYLTRANSFERASES; HISTONES; MEIOSIS; MODELS, GENETIC; OSMOTIC PRESSURE; RECOMBINATION, GENETIC; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE PROTEINS; SUPPRESSION, GENETIC; TRANS-ACTIVATION (GENETICS);

SCHIZOSACCHAROMYCES POMBE; SCHIZOSACCHAROMYCETACEAE;

EID: 41649089949     PISSN: 10591524     EISSN: None     Source Type: Journal    
DOI: 10.1091/mbc.E07-04-0377     Document Type: Article

References (52)

1. Agalioti, T., Lomvardas, S., Parekh, B., Yie, J., Maniatis, T., and Thanos, D. (2000). Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter. Cell 103, 667-678.
2. Allard, S., Utley, R. T., Savard, J., Clarke, A., Grant, P., Brandl, C. J., Pillus, L., Workman, J. L., and Cote, J. (1999). NuA4, an essential transcription adaptor/ histone H4 acetyltransferase complex containing Esa1p and the ATM-related cofactor Tra1p. EMBO J. 18, 5108-5119.
3. Bird, A. W., Yu, D. Y., Pray-Grant, M. G., Qiu, Q., Harmon, K. E., Megee, P. C., Grant, P. A., Smith, M. M., and Christman, M. F. (2002). Acetylation of histone H4 by Esa1 is required for DNA double-strand break repair. Nature 419, 411-415.
4. Brown, C. E., Lechner, T., Howe, L., and Workman, J. L. (2000). The many HATs of transcription coactivators. Trends Biochem. Sci. 25, 15-19.
5. Chen, H., Tini, M., and Evans, R. M. (2001). HATs on and beyond chromatin. Curr. Opin. Cell Biol. 13, 218-224.
6. Cho, H., Orphanides, G., Sun, X., Yang, X. J., Ogryzko, V., Lees, E., Nakatani, Y., and Reinberg, D. (1998). A human RNA polymerase II complex containing factors that modify chromatin structure. Mol. Cell. Biol. 18, 5355-5363.
7. Cosma, M. P., Tanaka, T., and Nasmyth, K. (1999). Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter. Cell 97, 299-311.
8. Downs, J. A., Allard, S., Jobin-Robitaille, O., Javaheri, A., Auger, A., Bouchard, N., Kron, S. J., Jackson, S. P., and Cote, J. (2004). Binding of chromatin-modifying activities to phosphorylated histone H2A at DNA damage sites. Mol. Cell 16, 979-990.
9. Elder, R. T., LOH, E. Y., and Davis, R. W. (1983). RNA from the yeast transposable element Ty1 has both ends in the direct repeats, a structure similar to retrovirus RNA. Proc. Natl. Acad. Sci. USA 80, 2432-2436.
10. Gomez, E. B., Espinosa, J. M., and Forsburg, S. L. (2005). Schizosaccharomyces pombe mst2+ encodes a MYST family histone acetyltransferase that negatively regulates telomere silencing. Mol. Cell. Biol. 25, 8887-8903.
11. Grant, P. A., Sterner, D. E., Duggan, L. J., Workman, J. L., and Berger, S. L. (1998). The SAGA unfolds: convergence of transcription regulators in chromatin-modifying complexes. Trends Cell Biol. 8, 193-197.
12. Grimm, C., Schaer, P., Munz, P., and Kohli, J. (1991). The strong ADH1 promoter stimulates mitotic and meiotic recombination at the ADE6 gene of Schizosaccharomyces pombe. Mol. Cell. Biol. 11, 289-298.
13. Gutz, H. (1971). Site specific induction of gene conversion in Schizosaccharomyces pombe. Genetics 69, 317-337.
14. Gutz, H., Heslot, H., Leupold, U., and Loprieno, N. (1974). Schizosaccharomyces pombe. In: Handbook of Genetics, Vol. 1, ed. R. D. King, New York: Plenum, 395-446.
15. Hirota, K., Hasemi, T., Yamada, T., Mizuno, K. I., Hoffman, C. S., Shibata, T., and Ohta, K. (2004). Fission yeast global repressors regulate the specificity of chromatin alteration in response to distinct environmental stresses. Nucleic Acids Res. 32, 855-862.
16. Hirota, K., Hoffman, C. S., and Ohta, K. (2006). Reciprocal nuclear shuttling of two antagonizing Zn finger proteins modulates Tup family corepressor function to repress chromatin remodeling. Eukaryot. Cell 5, 1980-1989.
17. Hirota, K., Hoffman, C. S., Shibata, T., and Ohta, K. (2003). Fission yeast Tup1-like repressors repress chromatin remodeling at the fbp1(+) promoter and the ade6-M26 recombination hotspot. Genetics 165, 505-515.
18. Iino, Y., and Yamamoto, M. (1985). Negative control for the initiation of meiosis in Schizosaccharomyces pombe. Proc. Natl. Acad. Sci. USA 82, 2447-2451.
19. Isshiki, T., Mochizuki, N., Maeda, T., and Yamamoto, M. (1992). Characterization of a fission yeast gene, gpa2, that encodes a G alpha subunit involved in the monitoring of nutrition. Genes Dev. 6, 2455-2462.
20. Kon, N., Krawchuk, M. D., Warren, B. G., Smith, G. R., and Wahls, W. P. (1997). Transcription factor Mts1/Mts2 (Atf1/Pcr1, Gad7/Pcr1) activates the M26 meiotic recombination hotspot in Schizosaccharomyces pombe. Proc. Natl. Acad. Sci. USA 94, 13765-13770.
21. Krebs, J. E., Kuo, M. H., Allis, C. D., and Peterson, C. L. (1999). Cell cycle-regulated histone acetylation required for expression of the yeast HO gene. Genes Dev. 13, 1412-1421.
22. Lichten, M., and Goldman, A. S. (1995). Meiotic recombination hotspots. Annu. Rev. Genet. 29, 423-444.
23. McLeod, M., and Beach, D. (1986). Homology between the ran1+ gene of fission yeast and protein kinases. EMBO J. 5, 3665-3671.
24. Mizuno, K., Emura, Y., Baur, M., Kohli, J., Ohta, K., and Shibata, T. (1997). The meiotic recombination hot spot created by the single-base substitution ade6-M26 results in remodeling of chromatin structure in fission yeast. Genes Dev. 11, 876-886.
25. Moreno, S., Klar, A., and Nurse, P. (1991). Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol. 194, 795-823.
26. Nachman, M. W. (2002). Variation in recombination rate across the genome: evidence and implications. Curr. Opin. Genet. Dev. 12, 657-663.
27. Nicolas, A. (1998). Relationship between transcription and initiation of meiotic recombination: toward chromatin accessibility. Proc. Natl. Acad. Sci. USA 95, 87-89.
28. Ohta, K., Shibata, T., and Nicolas, A. (1994). Changes in chromatin structure at recombination initiation sites during yeast meiosis. EMBO J. 13, 5754-5763.
29. Orphanides, G., and Reinberg, D. (2000). RNA polymerase II elongation through chromatin. Nature 407, 471-475.
30. Petes, T. D. (2001). Meiotic recombination hot spots and cold spots. Nat. Rev. Genet. 2, 360-369.
31. Ponticelli, A. S., Sena, E. P., and Smith, G. R. (1988). Genetic and physical analysis of the M26 recombination hotspot of Schizosaccharomyces pombe. Genetics 119, 491-497.
32. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
33. Schuchert, P., Langsford, M., Kaslin, E., and Kohli, J. (1991). A specific DNA sequence is required for high frequency of recombination in the ade6 gene of fission yeast. EMBO J. 10, 2157-2163.
34. Seo, H., Masuoka, M., Murofushi, H., Takeda, S., Shibata, T., and Ohta, K. (2005). Rapid generation of specific antibodies by enhanced homologous recombination. Nat. Biotechnol. 23, 731-735.
35. Sherman, F., Fink, G., and Hicks, J. (1986). Methods in Yeast Genetics: Laboratory Course Manual, Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
36. Steiner, W. W., Schreckhise, R. W., and Smith, G. R. (2002). Meiotic DNA breaks at the S. pombe recombination hot spot M26. Mol. Cell 9, 847-855.
37. Sun, H., Treco, D., Schultes, N. P., and Szostak, J. W. (1989). Double-strand breaks at an initiation site for meiotic gene conversion. Nature 338, 87-90.
38. Szankasi, P., Heyer, W. D., Schuchert, P., and Kohli, J. (1988). DNA sequence analysis of the ade6 gene of Schizosaccharomyces pombe. Wild-type and mutant alleles including the recombination host spot allele ade6-M26. J. Mol. Biol. 204, 917-925.
39. Takeda, T., and Yamamoto, M. (1987). Analysis and in vivo disruption of the gene coding for calmodulin in Schizosaccharomyces pombe. Proc. Natl. Acad. Sci. USA 84, 3580-3584.
40. Tong, J. K., Hassig, C. A., Schnitzler, G. R., Kingston, R. E., and Schreiber, S. L. (1998). Chromatin deacetylation by an ATP-dependent nucleosome remodelling complex. Nature 395, 917-921.
41. Travers, A. (1999). An engine for nucleosome remodeling. Cell 96, 311-314.
42. van Attikum, H., Fritsch, O., Hohn, B., and Gasser, S. M. (2004). Recruitment of the INO80 complex by H2A phosphorylation links ATP-dependent chromatin remodeling with DNA double-strand break repair. Cell 119, 777-788.
43. Wahls, W. P. (1998). Meiotic recombination hotspots: shaping the genome and insights into hypervariable minisatellite DNA change. Curr. Top. Dev. Biol. 37, 37-75.
44. Wahls, W. P., and Smith, G. R. (1994). A heteromeric protein that binds to a meiotic homologous recombination hot spot: correlation of binding and hot spot activity. Genes Dev. 8, 1693-1702.
45. Walfridsson, J., Khorosjutina, O., Matikainen, P., Gustafsson, C. M., and Ekwall, K. (2007). A genome-wide role for CHD remodelling factors and Nap1 in nucleosome disassembly. EMBO J. 26, 2868-2879.
46. Wolffe, A. (1997). Chromatin: Structure and Function, 3rd ed., San Diego, CA: Academic Press.
47. Wu, T. C., and Lichten, M. (1994). Meiosis-induced double-strand break sites determined by yeast chromatin structure. Science 263, 515-518.
48. Yamada, T., Mizuno, K. I., Hirota, K., Kon, N., Wahls, W. P., Hartsuiker, E., Murofushi, H., Shibata, T., and Ohta, K. (2004). Roles of histone acetylation and chromatin remodeling factor in a meiotic recombination hotspot. EMBO J. 23, 1792-1803.
49. Yamamoto, M., Imai, Y., and Watanabe, Y. (1997). Mating and Sporulation in Schizosaccharomyces pombe. In: The Molecular and Cellular Biology of the Yeast Saccharomyces, ed. J. R. Prigle, J. R. Broach, and E. W. Jones, Cold Spring Harbor, NY: Cold Spring Habor Laboratory Press, 1037-1106.
50. Yoo, E. J., Jin, Y. H., Jang, Y. K., Bjerling, P., Tabish, M., Hong, S. H., Ekwall, K., and Park, S. D. (2000). Fission yeast hrp1, a chromodomain ATPase, is required for proper chromosome segregation and its overexpression interferes with chromatin condensation. Nucleic Acids Res. 28, 2004-2011.
51. Zaman, Z., Ansari, A. Z., Koh, S. S., Young, R., and Ptashne, M. (2001). Interaction of a transcriptional repressor with the RNA polymerase II holoenzyme plays a crucial role in repression. Proc. Natl. Acad. Sci. USA 98, 2550-2554.
52. Zhang, Y., LeRoy, G., Seelig, H. P., Lane, W. S., and Reinberg, D. (1998). The dermatomyositis-specific autoantigen Mi2 is a component of a complex containing histone deacetylase and nucleosome remodeling activities. Cell 95, 279-289.