메뉴 건너뛰기




Volumn 9, Issue , 2008, Pages

Statistical methodology for the analysis of dye-switch microarray experiments

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATIC CORRECTIONS; BALANCED DESIGN; BIOLOGICAL SAMPLES; COMPLEX DESIGNS; MICROARRAY DESIGNS; MICROARRAY EXPERIMENTS; MIXED MODELING; STATISTICAL METHODOLOGIES;

EID: 41549129322     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-9-98     Document Type: Article
Times cited : (5)

References (19)
  • 1
    • 0036319960 scopus 로고    scopus 로고
    • Design issues for cDNA microarray experiments
    • 12154381
    • Yang Y Speed T Design issues for cDNA microarray experiments Nat Rev Genet 2002, 3(8):579-88. 12154381
    • (2002) Nat Rev Genet , vol.3 , Issue.8 , pp. 579-588
    • Yang, Y.1    Speed, T.2
  • 2
    • 0036900895 scopus 로고    scopus 로고
    • Fundamentals of experimental design for cDNA microarrays
    • 10.1038/ng1031 12454643
    • Churchill G Fundamentals of experimental design for cDNA microarrays Nat Genet 2002, 32:490-495. 10.1038/ng1031 12454643
    • (2002) Nat Genet , vol.32 , pp. 490-495
    • Churchill, G.1
  • 3
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • 10.1093/nar/30.4.e15
    • Yang Y Dudoit S Luu P Speed T Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation Nuclear Acids Res 2002, 30(4):e15. 10.1093/nar/30.4.e15
    • (2002) Nuclear Acids Res , vol.30 , Issue.4
    • Yang, Y.1    Dudoit, S.2    Luu, P.3    Speed, T.4
  • 5
    • 0037620681 scopus 로고    scopus 로고
    • Statistical design of reverse dye microarrays
    • 10.1093/bioinformatics/btg076 12724289
    • Dobbin K Shih J Simon R Statistical design of reverse dye microarrays Bioinformatics 2003, 19(7):803-810. 10.1093/bioinformatics/btg076 12724289
    • (2003) Bioinformatics , vol.19 , Issue.7 , pp. 803-810
    • Dobbin, K.1    Shih, J.2    Simon, R.3
  • 6
    • 18744378315 scopus 로고    scopus 로고
    • Evaluation of the gene-specific dye bias in cDNA microarray experiments
    • 10.1093/bioinformatics/bti302 15691855
    • Martin-Magniette M Aubert J Cabannes E Daudin J Evaluation of the gene-specific dye bias in cDNA microarray experiments Bioinformatics 2005, 21(9):1995-2000. 10.1093/bioinformatics/bti302 15691855
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 1995-2000
    • Martin-Magniette, M.1    Aubert, J.2    Cabannes, E.3    Daudin, J.4
  • 7
    • 19544369698 scopus 로고    scopus 로고
    • Characterizing dye bias in microarray experiments
    • 10.1093/bioinformatics/bti378 15774555
    • Dobbin K Kawasaki E Petersen D Simon R Characterizing dye bias in microarray experiments Bioinformatics 2005, 21(10):2430-2437. 10.1093/ bioinformatics/bti378 15774555
    • (2005) Bioinformatics , vol.21 , Issue.10 , pp. 2430-2437
    • Dobbin, K.1    Kawasaki, E.2    Petersen, D.3    Simon, R.4
  • 8
    • 0036789519 scopus 로고    scopus 로고
    • Variation in gene expression within and among natural populations
    • 10.1038/ng983 12219088
    • Oleksiak M Churchill G Crawford D Variation in gene expression within and among natural populations Nat Genet 2002, 32:261-266. 10.1038/ng983 12219088
    • (2002) Nat Genet , vol.32 , pp. 261-266
    • Oleksiak, M.1    Churchill, G.2    Crawford, D.3
  • 9
    • 33645754491 scopus 로고    scopus 로고
    • Neutral and adaptive variation in gene expression
    • 1414633 16567645 10.1073/pnas.0507648103
    • Whitehead A Crawford D Neutral and adaptive variation in gene expression Proc Natl Acad Sci USA 2006, 103(14):5425-5430. 1414633 16567645 10.1073/ pnas.0507648103
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.14 , pp. 5425-5430
    • Whitehead, A.1    Crawford, D.2
  • 10
    • 0034927555 scopus 로고    scopus 로고
    • Analysis of variance for gene expression microarray data
    • 10.1089/10665270050514954 11382364
    • Kerr M Martin M Churchill G Analysis of variance for gene expression microarray data J Comput Biol 2000, 7:819-837. 10.1089/10665270050514954 11382364
    • (2000) J Comput Biol , vol.7 , pp. 819-837
    • Kerr, M.1    Martin, M.2    Churchill, G.3
  • 12
    • 14944346805 scopus 로고    scopus 로고
    • Efficient two-sample designs for microarray experiments with biological replications
    • Landgrebe J Bretz F Brunner E Efficient two-sample designs for microarray experiments with biological replications Silico Biology 2004, 4:.
    • (2004) Silico Biology , vol.4
    • Landgrebe, J.1    Bretz, F.2    Brunner, E.3
  • 13
    • 24944539105 scopus 로고    scopus 로고
    • Efficient design and analysis of two colour factorial microarray experiments
    • 10.1016/j.csda.2004.08.014
    • Landgrebe J Bretz F Brunner E Efficient design and analysis of two colour factorial microarray experiments Comput Stat & Data Anal 2006, 50(2):499-517. 10.1016/j.csda.2004.08.014
    • (2006) Comput Stat & Data Anal , vol.50 , Issue.2 , pp. 499-517
    • Landgrebe, J.1    Bretz, F.2    Brunner, E.3
  • 15
    • 27344443714 scopus 로고    scopus 로고
    • Near-optimal designs for dual channel microarray studies
    • 10.1111/j.1467-9876.2005.00519.x
    • Wit E Nobile A Khanin R Near-optimal designs for dual channel microarray studies J R Stat Soc C 2005, 54(5):817-830. 10.1111/ j.1467-9876.2005.00519.x
    • (2005) J R Stat Soc C , vol.54 , Issue.5 , pp. 817-830
    • Wit, E.1    Nobile, A.2    Khanin, R.3
  • 16
    • 0034948896 scopus 로고    scopus 로고
    • A Bayesian Framework for the Analysis of Microarray Expression Data: Regularized t-Test and Statistical Inferences of Gene Changes
    • 10.1093/bioinformatics/17.6.509 11395427
    • Baldi P Long A A Bayesian Framework for the Analysis of Microarray Expression Data: Regularized t-Test and Statistical Inferences of Gene Changes Bioinformatics 2001, 17:509-519. 10.1093/bioinformatics/17.6.509 11395427
    • (2001) Bioinformatics , vol.17 , pp. 509-519
    • Baldi, P.1    Long, A.2
  • 17
    • 14644429669 scopus 로고    scopus 로고
    • VarMixt: Efficient variance modelling for the differential analysis of replicated gene expression data
    • 10.1093/bioinformatics/bti023 15374871
    • Delmar P Robin S Daudin J VarMixt: Efficient variance modelling for the differential analysis of replicated gene expression data Bioinformatics 2005, 21(4):502-508. 10.1093/bioinformatics/bti023 15374871
    • (2005) Bioinformatics , vol.21 , Issue.4 , pp. 502-508
    • Delmar, P.1    Robin, S.2    Daudin, J.3
  • 18
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Article 3 10.2202/1544-6115.1027
    • Smyth G Linear models and empirical Bayes methods for assessing differential expression in microarray experiments Statistical Applications in Genetics and Molecular Biology 2004, 3:ARticle 3. 10.2202/1544-6115.1027
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3
    • Smyth, G.1
  • 19
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to transcriptional response to ionizing radiations
    • 33173 11309499 10.1073/pnas.091062498
    • Tusher V Tibshirani R Chu C Significance analysis of microarrays applied to transcriptional response to ionizing radiations PNAS 2001, 98:5116-5121. 33173 11309499 10.1073/pnas.091062498
    • (2001) PNAS , vol.98 , pp. 5116-5121
    • Tusher, V.1    Tibshirani, R.2    Chu, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.