-
1
-
-
1642336155
-
Functional Genomic Hypothesis Generation and Experimentation by a Robot Scientist
-
14724639
-
King RD Whelan KE Jones FM Reiser PJK Bryant CH Muggleton S Kell DB Oliver S Functional Genomic Hypothesis Generation and Experimentation by a Robot Scientist Nature 2004, 427:247-252 14724639
-
(2004)
Nature
, vol.427
, pp. 247-252
-
-
King, R.D.1
Whelan, K.E.2
Jones, F.M.3
Reiser, P.J.K.4
Bryant, C.H.5
Muggleton, S.6
Kell, D.B.7
Oliver, S.8
-
2
-
-
0345618182
-
Combining inductive logic programming, active learning, and robotics to discover the function of genes
-
Bryant CH Muggleton SH Oliver SG Kell DB Reiser PGK King RD Combining inductive logic programming, active learning, and robotics to discover the function of genes Electronic Transactions in Artificial Intelligence 2001, 6(12):1-36
-
(2001)
Electronic Transactions in Artificial Intelligence
, vol.6
, Issue.12
, pp. 1-36
-
-
Bryant, C.H.1
Muggleton, S.H.2
Oliver, S.G.3
Kell, D.B.4
Reiser, P.G.K.5
King, R.D.6
-
4
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
12140549
-
Giaever G Functional profiling of the Saccharomyces cerevisiae genome Nature 2002, 418:387-391 12140549
-
(2002)
Nature
, vol.418
, pp. 387-391
-
-
Giaever, G.1
-
5
-
-
3843128481
-
Reconstruction an Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model
-
442145 15197165
-
Duarte NC Herrgard MJ Pallson BO Reconstruction an Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model Genome Res 2004, 14:1298-1309 442145 15197165
-
(2004)
Genome Res
, vol.14
, pp. 1298-1309
-
-
Duarte, N.C.1
Herrgard, M.J.2
Pallson, B.O.3
-
6
-
-
0037313750
-
Nielsen J. Genome-Scale Reconstruction of the Saccharomyces cerevisiae Metabolic Network
-
420374 12566402
-
Förster J Famili I Fu P Palsson BO Nielsen J. Genome-Scale Reconstruction of the Saccharomyces cerevisiae Metabolic Network Genome Research 2003, 13:244-253 420374 12566402
-
(2003)
Genome Research
, vol.13
, pp. 244-253
-
-
Förster, J.1
Famili, I.2
Fu, P.3
Palsson, B.O.4
-
7
-
-
0036500993
-
Systems Biology: A Brief Overview
-
11872829
-
Kitano H Systems Biology Systems Biology: A Brief Overview Science 2002, 295:1662-1664 11872829
-
(2002)
Science
, vol.295
, pp. 1662-1664
-
-
Kitano, H.1
-
8
-
-
0036500834
-
Reverse Engineering of Biological Complexity
-
11872830
-
Csete ME Doyle JC Reverse Engineering of Biological Complexity Science 2002, 295:1664-1669 11872830
-
(2002)
Science
, vol.295
, pp. 1664-1669
-
-
Csete, M.E.1
Doyle, J.C.2
-
9
-
-
0036500523
-
Whole-istic Biology
-
Chong L Ray LB Whole-istic Biology Science 2002, 295:1661
-
(2002)
Science
, vol.295
, pp. 1661
-
-
Chong, L.1
Ray, L.B.2
-
10
-
-
0036500609
-
A Genomic Regulatory Network for Development
-
11872831
-
Davidson EH Rast JP Oliveri P Ransick A Calestani C Yuh C Minokawa T Amore G Hinman V Arenas-Mena C Otim O Brown CT Livi CB Lee PY Revilla R Rust AG Zheng JP Schilstra MJ Clarke PJC Arnone MI Rowen L Cameron RA McClay DR Hood L Bolouri H A Genomic Regulatory Network for Development Science 2002, 295:1669-1678 11872831
-
(2002)
Science
, vol.295
, pp. 1669-1678
-
-
Davidson, E.H.1
Rast, J.P.2
Oliveri, P.3
Ransick, A.4
Calestani, C.5
Yuh, C.6
Minokawa, T.7
Amore, G.8
Hinman, V.9
Arenas-Mena, C.10
Otim, O.11
Brown, C.T.12
Livi, C.B.13
Lee, P.Y.14
Revilla, R.15
Rust, A.G.16
Zheng, J.P.17
Schilstra, M.J.18
Clarke, P.J.C.19
Arnone, M.I.20
Rowen, L.21
Cameron, R.A.22
McClay, D.R.23
Hood, L.24
Bolouri, H.25
more..
-
11
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
102409 10592173
-
Kanehisa M Goto S KEGG: Kyoto Encyclopedia of Genes and Genomes Nucleic Acids Res 2000, 28:27-30 102409 10592173
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
12
-
-
0030921594
-
A database for post-genome analysis
-
9287494
-
Kanehisa M A database for post-genome analysis Trends Genet 1997. 13:375-376 9287494
-
(1997)
Trends Genet
, vol.13
, pp. 375-376
-
-
Kanehisa, M.1
-
14
-
-
1542375741
-
Optimal Identification of Biochemical Reaction Networks
-
1303968 14990460
-
Feng X Rabitz H Optimal Identification of Biochemical Reaction Networks Biophysical Journal 2004, 86:1270-1281 1303968 14990460
-
(2004)
Biophysical Journal
, vol.86
, pp. 1270-1281
-
-
Feng, X.1
Rabitz, H.2
-
15
-
-
0030921160
-
Biochemistry by numbers: Simulation of biochemical pathways with Gepasi 3
-
Mendes P Biochemistry by numbers: Simulation of biochemical pathways with Gepasi 3 Trends Biochem Sci 1997, 22:36-363
-
(1997)
Trends Biochem Sci
, vol.22
, pp. 36-363
-
-
Mendes, P.1
-
16
-
-
0141577530
-
Numerical optimisation and simulation for rational metabolic engineering
-
Chalmers Reproservice, Göteborg Larsson C, Påhlman I-L, Gustafsson L
-
Mendes P Kell DB Numerical optimisation and simulation for rational metabolic engineering BioThermoKinetics in the post-genomic era Chalmers Reproservice, Göteborg Larsson C, Påhlman I-L, Gustafsson L 1998, 345-349
-
(1998)
BioThermoKinetics in the Post-genomic Era
, pp. 345-349
-
-
Mendes, P.1
Kell, D.B.2
-
17
-
-
0032406131
-
Nonlinear optimisation of metabolic pathways: Applications to metabolic engineering and parameter estimation
-
9927716
-
Mendes P Kell DB Nonlinear optimisation of metabolic pathways: applications to metabolic engineering and parameter estimation Bioinformatics 1998, 14:869-883 9927716
-
(1998)
Bioinformatics
, vol.14
, pp. 869-883
-
-
Mendes, P.1
Kell, D.B.2
-
18
-
-
0033031386
-
E-CELL: Software environment for whole-cell simulation
-
10068694
-
Tomita M Hashimoto K Takahashi K Shimuzu TS Matsuzaki Y Miyoshi F Saito K Tanida S Yugi K Venter JC Hutchinson JC E-CELL: Software environment for whole-cell simulation Bioinformatics 1999, 15:72-84 10068694
-
(1999)
Bioinformatics
, vol.15
, pp. 72-84
-
-
Tomita, M.1
Hashimoto, K.2
Takahashi, K.3
Shimuzu, T.S.4
Matsuzaki, Y.5
Miyoshi, F.6
Saito, K.7
Tanida, S.8
Yugi, K.9
Venter, J.C.10
Hutchinson, J.C.11
-
19
-
-
2942579562
-
Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions
-
29061 11001586
-
Edwards JS Palsson BO Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions BMC Bioinformatics 2000, 1:1 29061 11001586
-
(2000)
BMC Bioinformatics
, vol.1
, pp. 1
-
-
Edwards, J.S.1
Palsson, B.O.2
-
20
-
-
0036708443
-
Dynamic Flux Balance Analysis of Diauxic Growth in Escherichia coli
-
1302231 12202358
-
Mahadevan R Edwards JS Doyle FJ Dynamic Flux Balance Analysis of Diauxic Growth in Escherichia coli Biophysical Journal 2002, 83:1331-1340 1302231 12202358
-
(2002)
Biophysical Journal
, vol.83
, pp. 1331-1340
-
-
Mahadevan, R.1
Edwards, J.S.2
Doyle, F.J.3
-
21
-
-
33846910173
-
Global Reconstruction of the Human Metabolic Network based on Genomic and Bibliomic Data
-
1794290 17267599
-
Duarte ND Becker SA Jamshidi N Thiele I Mo ML Vo TD Srivas R Palsson BO Global Reconstruction of the Human Metabolic Network based on Genomic and Bibliomic Data Proc Natl Acad Sci USA 2007, 104(6):1777-82 1794290 17267599
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.6
, pp. 1777-1782
-
-
Duarte, N.D.1
Becker, S.A.2
Jamshidi, N.3
Thiele, I.4
Mo, M.L.5
Vo, T.D.6
Srivas, R.7
Palsson, B.O.8
-
23
-
-
0037069467
-
Analysis of optimality in natural and perturbed metabolic networks
-
137552 12415116
-
Segre D Vitkuo D Church GM Analysis of optimality in natural and perturbed metabolic networks Proc Natl Acad Sci USA 2002, 99(23):15112-15117 137552 12415116
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.23
, pp. 15112-15117
-
-
Segre, D.1
Vitkuo, D.2
Church, G.M.3
-
24
-
-
19644386033
-
Regulatory on/off minimization of metabolic flux changes after genetic perturbations
-
1140402 15897462
-
Shlomi T Berkman O Ruppin E Regulatory on/off minimization of metabolic flux changes after genetic perturbations Proc Natl Acad Sci USA 2005, 102(21):7695-7700 1140402 15897462
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.21
, pp. 7695-7700
-
-
Shlomi, T.1
Berkman, O.2
Ruppin, E.3
-
25
-
-
0037079050
-
Metabolic network structure determines key aspects of functionality and regulation
-
12432396
-
Stelling J Klamt S Bettenbrock K Schuster S Gilles ED Metabolic network structure determines key aspects of functionality and regulation Nature 2002, 420(6912):190-193 12432396
-
(2002)
Nature
, vol.420
, Issue.6912
, pp. 190-193
-
-
Stelling, J.1
Klamt, S.2
Bettenbrock, K.3
Schuster, S.4
Gilles, E.D.5
-
31
-
-
0345598902
-
Random Boolean network models and the yeast transcriptional network
-
299805 14657375
-
Kauffman S Peterson C Samuelsson B Troein C Random Boolean network models and the yeast transcriptional network Proc Natl Acad Sci USA 2003, 100(25):14796-14799 299805 14657375
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.25
, pp. 14796-14799
-
-
Kauffman, S.1
Peterson, C.2
Samuelsson, B.3
Troein, C.4
-
33
-
-
18744388601
-
On the use of qualitative reasoning to simulate and identify metabolic pathways
-
15647297
-
King RD Garrett SM Coghill GM On the use of qualitative reasoning to simulate and identify metabolic pathways Bioinformatics 2005, 21(9):2017-2026 15647297
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2017-2026
-
-
King, R.D.1
Garrett, S.M.2
Coghill, G.M.3
-
34
-
-
1942421135
-
The Geometry of ROC Space: Understanding Machine Learning Metrics through ROC Isometrics
-
Flach PA The Geometry of ROC Space: Understanding Machine Learning Metrics through ROC Isometrics Proceedings of ICML03 2003
-
(2003)
Proceedings of ICML03
-
-
Flach, P.A.1
-
35
-
-
0042816453
-
Large Scale Evaluation of in-silico gene knockouts in Saccharomyces cerevisiae Omics
-
Förster J Famili I Fu P Palsson BO Large Scale Evaluation of in-silico gene knockouts in Saccharomyces cerevisiae Omics 2003, 7:193-202
-
(2003)
, vol.7
, pp. 193-202
-
-
Förster, J.1
Famili, I.2
Fu, P.3
Palsson, B.O.4
-
37
-
-
84886764404
-
-
Robot Scientist http://www.aber.ac.uk/compsci/Research/bio/robotsci/
-
-
-
-
38
-
-
38549170927
-
MIPS: Analysis and annotation of genome information in 2007
-
36 Database
-
Mewes HW Dietmann S Frishman D Gregory R Mannhaupt G Mayer K Muensterkötter M Ruepp A Spannagl M Stuempflen V Rattei T MIPS: Analysis and annotation of genome information in 2007 Nuc Acids Res 2008, 36 Database D196-201
-
(2008)
Nuc Acids Res
-
-
Mewes, H.W.1
Dietmann, S.2
Frishman, D.3
Gregory, R.4
Mannhaupt, G.5
Mayer, K.6
Muensterkötter, M.7
Ruepp, A.8
Spannagl, M.9
Stuempflen, V.10
Rattei, T.11
-
39
-
-
6044249965
-
Saccharomyces genome database: Underlying principles and organisation
-
15153302
-
Dwight SS Balakrishnan R Christie KR Costanzo MC Dolinski K Engel SR Feierbach B Fisk DG Hirschman J Hong EL Issel-Tarver L Nash RS Sethuraman A Starr B Theesfeld CL Andrada R Binkley G Dong Q Lane C Schroeder M Weng S Botstein D Cherry JM Saccharomyces genome database: underlying principles and organisation Brief Bioinform 2004, 5(1):9-22 15153302
-
(2004)
Brief Bioinform
, vol.5
, Issue.1
, pp. 9-22
-
-
Dwight, S.S.1
Balakrishnan, R.2
Christie, K.R.3
Costanzo, M.C.4
Dolinski, K.5
Engel, S.R.6
Feierbach, B.7
Fisk, D.G.8
Hirschman, J.9
Hong, E.L.10
Issel-Tarver, L.11
Nash, R.S.12
Sethuraman, A.13
Starr, B.14
Theesfeld, C.L.15
Andrada, R.16
Binkley, G.17
Dong, Q.18
Lane, C.19
Schroeder, M.20
Weng, S.21
Botstein, D.22
Cherry, J.M.23
more..
-
40
-
-
0043122944
-
ExPaSy: The proteomics server for in-depth protein knowledge and analysis
-
168970 12824418
-
Gasteiger E Gattiker A Hoogland C Ivanyi I Appel RD Bairoch A ExPaSy: The proteomics server for in-depth protein knowledge and analysis Nucleic Acids Research 2003, 31(13):3784-3788 168970 12824418
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3784-3788
-
-
Gasteiger, E.1
Gattiker, A.2
Hoogland, C.3
Ivanyi, I.4
Appel, R.D.5
Bairoch, A.6
|