Kinetic and mechanistic characterization of the formyl-CoA transferase from Oxalobacter formigenes

Journal of Biological Chemistry

Volumn 279, Issue 34, 2004, Pages 36003-36012

  Jonsson, Stefan ^a   Ricagno, Stefano ^b   Lindqvist, Ylva ^b   Richards, Nigel G J ^a  

^a University of Florida ^*  (United States)

^b KAROLINSKA INSTITUTE   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MEMBRANES; CATALYSIS; ENZYME KINETICS; X RAY CRYSTALLOGRAPHY;

ACYLENZYMES; ANHYDRIDE INTERMEDIATES;

GENES;

COENZYME A TRANSFERASE; FORMYL COENZYME A TRANSFERASE; UNCLASSIFIED DRUG;

ANAEROBIC METABOLISM; ARTICLE; BACTERIAL COLONIZATION; CATALYSIS; ENZYME BINDING; ENZYME KINETICS; ENZYME MECHANISM; GASTROINTESTINAL TRACT; INCUBATION TIME; MEMBRANE BINDING; NONHUMAN; OPTICAL RESOLUTION; OXALOBACTER FORMIGENES; PRIORITY JOURNAL; SITE DIRECTED MUTAGENESIS; THREE DIMENSIONAL IMAGING; WILD TYPE; X RAY CRYSTALLOGRAPHY;

BACTERIAL PROTEINS; CATALYTIC DOMAIN; COENZYME A-TRANSFERASES; HUMANS; KINETICS; MOLECULAR STRUCTURE; MUTATION; OXALOBACTER FORMIGENES; PROTEIN CONFORMATION; RECOMBINANT PROTEINS; STRUCTURE-ACTIVITY RELATIONSHIP;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; OXALOBACTER FORMIGENES;

EID: 4143147626     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M404873200     Document Type: Article

References (60)

1. Allison, M. J., Dawson, K. A., Mayberry, W. R., and Foss, J. G. (1985) Arch. Microbiol. 141, 1-7
2. Dawson, K. A., Allison, M. J., and Hartman, P. A. (1980) Appl. Environ. Microbiol. 40, 833-839
3. Cornick, N. A., and Allison, M. J. (1996) Appl. Environ. Microbiol. 62, 3011-3013
4. Sidhu, H., Hoppe, B., Hesse, A., Tenbrock, K., Brömme, S., Rietschel, E., and Peck, A. B. (1998) Lancet 352, 1026-1029
5. Allison, M. J., Cook, H. M., Milne, D. B., Gallagher, S., and Clayman, R. V. (1986) J. Nutr. 116, 455-460
6. Sidhu, H., Schmidt, M. E., Cornelius, J. E., Thamilsevan, S., Khan, S. R., Hesse, A., and Peck, A. B. (1999) J. Am. Soc. Nephrol. 14, S334-S340
7. Anatharam, V., Allison, M. J., and Maloney, P. C. (1989) J. Biol. Chem. 264, 7244-7250
8. Cornick, N. A., and Allison, M. J. (1996) Can. J. Microbiol. 42, 1081-1086
9. Quayle, J. R. (1963) Biochem. J. 89, 492-503
10. Jakoby, W. B., Ohmura, E., and Hayaishi, O. (1956) J. Biol. Chem. 222, 435-446
11. Zaitsev, G. M., Govorukhina, N. I., Laskovneva, O. V., and Trotsenko, Y. A. (1993) Microbiology 62, 378-382
12. Baetz, A. L., and Allison, M. J. (1989) J. Bacteriol. 171, 2605-2608
13. Lung, H.-Y., Baetz, A. L., and Peck, A. B. (1994) J. Bacteriol. 176, 2468-2472
14. Baetz, A. L., and Allison, M. J. (1990) J. Bacteriol. 172, 3537-3540
15. Baetz, A. L., and Allison, M. J. (1992) Syst. Appl. Microbiol. 15, 167-171
16. Quayle, J. R., and Keech, D. B. (1959) Biochem. J. 72, 631-637
17. Jormakka, M., Tornroth, S., Byrne, B., and Iwata, S. (2002) Science 295, 1863-1868
18. Hirai, T., Heymann, J. A. W., Shi, D., Sarker, R., Maloney, P. C., and Subramaniam, S. (2002) Nat. Struct. Biol. 9, 597-600
19. Maloney, P. C., Anantharam, V., and Allison, M. J. (1992) J. Biol. Chem. 267, 10531-10546
20. Ruan, Z.-S., Anantharam, V., Crawford, I. T., Ambudkar, S. V., Rhee, S. Y., Allison, M. J., and Maloney, P. C. (1992) J. Biol. Chem. 267, 10537-10543
21. Abe, K., Ruan, Z.-S., and Maloney, P. C. (1996) J. Biol. Chem. 271, 6789-6793
22. Blattner, F. R., Plunkett, G., III, Bloch, C. A., Perna, N. T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J. D., Rode, C. K., Mayhew, G. F., Gregor, J., Davis, N. W., Kirkpatrick, H. A., Goeden, M. A., Rose, D. J., Mau, B., and Shao, Y. (1997) Science 277, 1453-1474
23. Heider, J. (2001) FEBS Lett. 509, 345-349
24. Elssner, T., Engemann, C., Baumgart, K., and Kleber, H.-P. (2001) Biochemistry 40, 11140-11148
25. Leutwein, C., and Heider, J. (2002) Arch. Microbiol. 178, 517-524
26. Leutwein, C., and Heider, J. (2001) J. Bacteriol. 183, 4288-4295
27. Dickert, S., Pierik, A. J., Linder, D., and Buckel, W. (2000) Eur. J. Biochem. 267, 3874-3884
28. Ye, H.-Q., Mallonee, H., Wells, J. E., Björkhem, I., and Hylemon, P. B. (1999) J. Lipid Res. 40, 17-23
29. Ricagno, S., Jonsson, S., Richards, N., and Lindqvist, Y. (2003) EMBO J. 22, 3210-3219
30. Gruez, A., Roig-Zamboni, V., Valencia, C., Campanacci, V., and Cambillau, C. (2003) J. Biol. Chem. 278, 34582-34586
31. Gagos, A., Gorman, J., and Shapiro, L. (2004) Acta Crystallogr. Sect. D Biol. Crystallogr. 60, 507-511
32. White, H., and Jencks, W. P. (1976) J. Biol. Chem. 251, 1688-1699
33. Lowry, O. H., Rosebrough, S. J., Farr, A. L., and Randall, R. J. (1951) J. Biol. Chem. 193, 265-275
34. Sidhu, H., Ogden, S. D., Lung, H.-Y., Luttge, B. G., Baetz, A. L., and Peck, A.B. (1997) J. Bacteriol. 179, 3378-3381
35. Sly, W. S., and Stadtman, E. R. (1963) J. Biol. Chem. 238, 2632-2638
36. Bax, P. C., and Stevens, W. (1970) Recl. Trav. Chim. 89, 265-269
37. Stevens, W., and Vanes, A. (1964) Recl. Trav. Chim. 83, 863-872
38. Quayle, J. R. (1963) Biochem. J. 87, 368-373
39. Demoz, A., Garras, A., Asiedu, D. K., Netteland, B., and Berge, R. K. (1995) J. Chromatogr. B 667, 148-152
40. Segel, I. H. (1975) Enzyme Kinetics, pp. 273-329 and 580-585, Wiley-Interscience, New York.
41. Ricagno, S., Jonsson, S., Richards, N., and Lindqvist, Y. (2003) Acta Crystallogr. Sect. D Biol. Crystallogr. 59, 1276-1277
42. Leslie, A. G. W. (1997) MOSFLM, version 5.40, MRC Laboratory of Molecular Biology, Cambridge, UK
43. Collaborative Computational Project Number 4. (1994) Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 760-763
44. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. Sect. D Biol. Crystallogr. 53, 240-255
45. Perrakis, A., Sixma, T. K., Wilson, K. S., and Lamzin, V. S. (1997) Acta Crystallogr. Sect. D Biol. Crystallogr. 53, 448-455
46. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sect. A 47, 110-119
47. Laskowski, R. A., Moss, D. S., and Thornton, J. M. (1993) J. Mol. Biol. 231, 1049-1067
48. Lu, G. (2000) J. Appl. Crystallogr. 33, 176-183
49. Emsley, P., and Cowtan, K. (2004) Acta Crystallogr. Sect. D Biol. Crystallogr. 60, in press
50. Hersh, L. B., and Jencks, W. P. (1967) J. Biol. Chem. 242, 3468-3480
51. Selmer, T., and Buckel, W. (1999) J. Biol. Chem. 274, 20772-20778
52. Moore, S. A., and Jencks, W. P. (1982) J. Biol. Chem. 257, 10882-10892
53. Sramek, S. J., Frerman, F. E., McCormick, D. J., and Duncombe, G. R. (1977) Arch. Biochem. Biophys. 181, 525-533
54. Lloyd, A. J., and Shoolingin-Jordan, P. M. (2001) Biochemistry 40, 2455-2467
55. Moore, S. A., and Jencks, W. P. (1982) J. Biol. Chem. 257, 10893-10907
56. Hess, R. A., Hengge, A. C., and Cleland, W. W. (1998) J. Am. Chem. Soc. 120, 2703-2709
57. Yang, W., and Drueckhammer, D. G. (2001) J. Am. Chem. Soc. 123, 11004-11009
58. Humphrey, A., Dalke, A., and Schulten, K. (1996) J. Mol. Graph. 14, 33-38
59. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950
60. Merritt, E. A., and Bacon, D. J. (1997) Methods Enzymol. 277, 504-524