Principle component analysis in F/10 and G/11 xylanase

Biochemical and Biophysical Research Communications

Volumn 322, Issue 1, 2004, Pages 277-280

  Liu, Liangwei ^a   Zhang, Jue ^a   Chen, Bin ^a   Shao, Weilan ^a  

^a YANGTZE UNIVERSITY   (China)

Author keywords

Classification; Computation; Principle component analysis; Structure; Xylanase

Indexed keywords

XYLAN ENDO 1,3 BETA XYLOSIDASE;

AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; COMPARATIVE STUDY; COMPUTER ANALYSIS; COMPUTER MODEL; COMPUTER PREDICTION; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FAMILY; PROTEIN SECONDARY STRUCTURE;

AMINO ACID SEQUENCE; AMINO ACIDS; COMPUTER SIMULATION; DATABASES, PROTEIN; ENDO-1,4-BETA XYLANASES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PRINCIPAL COMPONENT ANALYSIS; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; SEQUENCE ANALYSIS, PROTEIN; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 4143081403     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbrc.2004.07.116     Document Type: Article

References (17)

1. L. Viikari, A. Kantellinen, J. Sundquist, and M. Linko Xylanases in bleaching: from an idea to the industry FEMS Microbiol. Rev. 13 1994 335 350
2. R.A. Prade Xylanases: from biology to biotechnology Biotechnol. Genet. Eng. Rev. 13 1996 101 131
3. K. Poutanen Enzymes: an important tool in the improvement of the quality of cereal foods Trends Food Sci. Technol. 9 1997 300 306
4. K.K. Wong, L.U. Tan, and J. Saddler Multiplicity of β-1,4-xylanase in microorganisms: functions and applications Microbiol. Mol. Biol. Rev 52 1988 305 317
5. B. Henrissat, M. Claeyssens, P. Tomme, L. Lemesle, and J.P. Mornon Cellulase families revealed by hydrophobic cluster analysis Gene 81 1989 83 95
6. N.R. Gilkes, D.G. Kilburn, R.C. Miller Jr., and J. Sundquist Domains in microbial B-1,4-glycanases: sequence conservation, function, and enzyme families Microbiol. Mol. Biol. Rev. 55 1991 303 315
7. B. Henrissat A classification of glycosyl hydrolases based on amino acid sequence similarities Biochem. J. 280 1991 309 316
8. B. Henrissat, and A. Bairoch New families in the classification of glycosyl hydrolases based on amino acid sequence similarities Biochem. J. 293 1993 781 788
9. Anonymous, Enzyme Nomenclature: Recommendations of the Nomenclature Committee of the International Union of Biochemistry on the Nomenclature and Classification of Enzyme-Catalysed Reactions, in: Anonymous, London and New York, 1984
10. N. Kulkarni, M. Lakshmikumaran, and M. Rao Xylanase II from an alkaliphilic thermophilic Bacillus with a distinctly different structure from other xylanases: evolutionary relationship to alkaliphilic xylanases Biochem. Biophys. Res. Commun. 263 1999 640 645
11. N. Kulkarni, A. Shendye, and M. Rao Molecular and biotechnological aspects of xylanases FEMS Microbiol. Rev. 23 1999 411 456
12. K.E. Nelson, R.A. Clayton, S.R. Gill, M.L. Gwinn, R.J. Dodson, D.H. Haft, E.K. Hickey, J.D. Peterson, W.C. Nelson, K.A. Ketchum, L. McDonald, T.R. Utterback, J.A. Malek, K.D. Linher, M.M. Garrett, A.M. Stewart, M.D. Cotton, M.S. Pratt, C.A. Phillips, D. Richardson, J. Heidelberg, G.G. Sutton, R.D. Fleischmann, J.A. Eisen, O. White, S.L. Salzberg, H.O. Smith, J.C. Venter, and C.M. Fraser Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima Nature 399 1999 323 329
13. P.Y. Chou, and G.D. Fasman Empirical predictions of protein conformation Ann. Rev. Biochem. 47 1978 251 276
14. L. Lo Leggio, S. Kalogiannis, M.K. Bhat, and R.W. Pickersgill High resolution structure and sequence of T. aurantiacus xylanase I: implication for the evolution of thermostability in family 10 xylanases and enzymes with Barrel architecture Proteins 36 1999 295 306
15. R. Vadrevu, C.J. Falzone, and C.R. Matthews Partial NMR assignments and secondary structure mapping of the isolated subunit of Escherichia coli tryptophan synthase a 29-kDa TIM barrel protein Protein Sci. 12 2003 185 191
16. A. Torronen, A. Harkki, and J. Rouvinen Three-dimensional structure of endo-1,4-beta-xylanase II from Trichoderma reesei: two conformational states in the active site EMBO J. 13 1994 2493 2501
17. U. Krengel Three-dimensional structure of endo-1,4-xylanase I from Aspergillus niger: molecular basis for its low pH optimum J. Mol. Biol. 263 1996 70 78