Effects of two cis-acting mutations on the regulation and expression of release factor one in Escherichia coli

Biochimie

Volumn 86, Issue 7, 2004, Pages 431-438

  Dahlgren, Ann ^a   Rydén Aulin, Monica ^a  

^a STOCKHOLM UNIVERSITY   (Sweden)

Author keywords

Growth rate control; hemA; Promoters; RF1; Translation initiation

Indexed keywords

BACTERIAL PROTEIN; BACTERIAL RNA; CIS ACTING ELEMENT; RELEASE FACTOR 1; TRANSFER RNA; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL MUTATION; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; GENE MUTATION; GENE SEQUENCE; GROWTH REGULATION; NONHUMAN; PHENOTYPE; PROMOTER REGION; RNA TRANSLATION; START CODON; SUPPRESSOR GENE; TRANSLATION INITIATION;

BASE SEQUENCE; CHROMOSOME MAPPING; DNA PRIMERS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; MUTAGENESIS; PEPTIDE TERMINATION FACTORS; RECOMBINANT FUSION PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, NUCLEIC ACID;

ESCHERICHIA COLI;

EID: 4143057005     PISSN: 03009084     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biochi.2004.06.009     Document Type: Article

References (30)

1. Kisselev L.L., and Buckingham R.H. Translational termination comes of age TIBS 25 2000 561 566
2. Kawakami K., Jönsson Y.H., Björk G.R., Ikeda H., and Nakamura Y. Chromosomal location and structure of the operon encoding peptide-chain-release factor 2 of Escherichia coli Proc. Natl. Acad. Sci. USA 85 1988 5620 5624
3. Craigen W.J., and Caskey C.T. Expression of peptide release factor 2 requires high-efficiency frameshift Nature 322 1986 273 275
4. Rydén M., Murphy J., Martin R., Isaksson L., and Gallant J. Mapping and complementation studies of the gene for release factor 1 J. Bacteriol. 168 1986 1066 1069
5. Beale S.I. Biosynthesis of hemes second ed Neidhardt F.C. Curtiss R. III Ingraham J.L. Lin E.C.C. Low K.B. Magasanik B. Reznikoff W.S. Riley M. Schaechter M. Umbarger H.E. Escherichia coli and Salmonella: Cellular and Molecular Biology 1996 American Society for Microbiology Washington, DC 731 748
6. Verderber E., Lucast L.J., van Dehy J.A., Cozart P., Etter J.B., and Best E.A. Role of the hemA gene product and δ-aminolevulinic acid in regulation of Escherichia coli heme synthesis J. Bacteriol. 179 1997 4583 4590
7. Nakayashiki T., Nishimura K., and Inokuchi H. Cloning and sequencing of a previously unidentified gene that is involved in the biosynthesis of heme in Escherichia coli Gene 153 1995 67 70
8. 5-glutamine methyltransferase that modifies peptide release factors EMBO J. 21 2002 769 778
9. Nakahigashi K., Kubo N., Narita S.-I., Shimaoka T., Goto S., Oshima T., Mori H., Maeda M., Wada C., and Inokuchi H. HemK, a class of protein methyl transferase with similarity to DNA methyl transferases, methylates polypeptide chain release factors, and hemK knockout induces defects in translational termination Proc. Natl. Acad. Sci. USA 99 2002 1473 1478
10. Rakeman J.L., Bonifield H.R., and Miller S.I. A HilA-independent pathway to Salmonella typhimurium invasion gene transcription J. Bacteriol. 181 1999 3096 3104
11. Strohmaier H., Remler P., Renner W., and Högenauer G. Expression of genes kdsA and kdsB involved in 3-deoxy-D-manno-octulosonic acid metabolism and biosynthesis of enterobacterial lipopolysaccharide is growth phase regulated primarily at the transcriptional level in Escherichia coli K-12 J. Bacteriol. 177 1995 4488 4500
12. Verkamp E., and Chelm B.K. Isolation, nucleotide sequence, and preliminary characterization of the Escherichia coli K-12 hemA gene J. Bacteriol. 171 1989 4728 4735
13. Matsuyama S.-I., Yokota N., and Tokuda H. A novel outer membrane lipoprotein, LolB (HemM), involved in the LolA (p20)-dependent localization of lipoproteins to the outer membrane of Escherichia coli EMBO J. 16 1997 6947 6955
14. Wang L.Y., Brown L., Elliott M., and Elliott T. Regulation of heme biosynthesis in Salmonella typhimurium: activity of glutamyl-tRNA reductase (hema) is greatly elevated during heme limitation by a mechanism, which increases abundance of the protein J. Bacteriol. 179 1997 2907 2914
15. Wang L., Elliott M., and Elliott T. Conditional stability of HemA protein (Glutamyl-tRNA reductase) regulates heme biosynthesis in Salmonella typhimurium J. Bacteriol. 181 1999 1211 1219
16. Adamski F.M., McCaughan K.K., Jørgensen F., Kurland C.G., and Tate W.P. The concentration of polypeptide chain release factors 1 and 2 at different growth rates of Escherichia coli J. Mol. Biol. 238 1994 302 308
17. Sullivan M.A., and Bock R.M. Isolation and characterization of antisuppressor mutations in Escherichia coli J. Bacteriol. 161 1985 377 384
18. Miller J.H. Experiments in Molecular Genetics 1972 Cold Spring Harbor Laboratory Press New York
19. Neidhardt F.C., Bloch P.L., Pedersen S., and Reeh S. Chemical measurements of steady-state levels of ten aminoacyl-transfer ribonucleic acid synthetases in Escherichia coli J. Bacteriol. 129 1997 378 387
20. Simons R.W., Houman F., and Kleckner N. Improved single and multicopy lac-based cloning vectors for protein and operon fusions Gene 53 1987 85 96
21. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual 1989 Cold Spring Harbor Laboratory Press New York
22. Powell B.S., Court D.L., Nakamura Y., Rivas M.P., and Turnbough C.L. Jr. C.L Rapid confirmation of single copy lambda prophage integration by PCR Nucleic Acids Res 22 1994 5765 5766
23. Rydén-Aulin M., Zhang S., Kylsten P., and Isaksson L.A. Ribosome activity and modification of 16S rRNA are influenced by deletion of ribosomal protein S20 Mol. Microbiol. 7 1993 983 992
24. Ringquist S., Shinedling S., Barrick D., Green L., Binkley J., Stormo G.D., and Gold L. Translation initiation in Escherichia coli: sequences within the ribosome-binding site Mol. Microbiol. 6 1992 1219 1229
25. Cashel M., Gentry D.R., Hernandez V.J., and Vinella D. The stringent response second ed Neidhardt F.C. Curtiss R. III Ingraham J.L. Lin E.C.C. Low K.B.N. Magasanik B. Reznikoff W.S. Riley M. Schaechter M. Umbarger H.E. Escherichia coli and Salmonella: Cellular and Molecular Biology 1996 American Society for Microbiology Washington, DC 1458 1496
26. Mora L., Zavialov A.V., Ehrenberg M., and Buckingham R.H. Stop codon recognition and interactions with peptide release factor RF3 of truncated and chimeric RF1 and RF2 from Escherichia coli Mol. Microbiol. 50 2003 1467 1476
27. Barker M.M., Gaal T., Josaitis C.A., and Gourse R.L. Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro J. Mol. Biol. 305 2001 673 688
28. Hanahan D. Studies on transformation of Escherichia coli with plasmids J. Mol. Biol. 166 1983 557 580
29. Bachmann B.J. Derivations and genotypes of some mutant derivatives of Escherichia coli K-12 second ed Neidhardt F.C. Curtiss R. III Ingraham J.L. Lin E.C.C. Low K.B.N. Magasanik B. Reznikoff W.S. Riley M. Schaechter M. Umbarger H.E. Escherichia coli and Salmonella: Cellular and Molecular Biology 1996 American Society for Microbiology Washington, DC 2460 2488
30. Jensen K.F. The Escherichia coli K-12 "Wild Types" W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrE expression levels J. Bacteriol. 175 1993 3401 3407