Combined use of phenotypic and genotypic information in sampling animals for genotyping in detection of quantitative trait loci

Journal of Animal Breeding and Genetics

Volumn 125, Issue 2, 2008, Pages 100-109

  Ansari Mahyari, S ^a,b,c,d   Berg, P ^a  

^a AARHUS UNIVERSITY   (Denmark)

^b AGRICULTURAL BIOTECHNOLOGY RESEARCH INSTITUTE OF IRAN   (Iran)

^c UNIVERSITY OF COPENHAGEN   (Denmark)

^d AARHUS UNIVERSITY   (Denmark)

Author keywords

Phenotype and genotype information; QTL mapping; Selective genotyping

Indexed keywords

ANALYSIS OF VARIANCE; ANIMAL; ARTICLE; BIOLOGICAL MODEL; FEMALE; GENE LINKAGE DISEQUILIBRIUM; GENOTYPE; MALE; PHENOTYPE; POPULATION GENETICS; QUANTITATIVE TRAIT LOCUS; STATISTICAL MODEL; STATISTICS;

ANALYSIS OF VARIANCE; ANIMALS; FEMALE; GENETICS, POPULATION; GENOTYPE; LIKELIHOOD FUNCTIONS; LINKAGE DISEQUILIBRIUM; MALE; MODELS, GENETIC; PHENOTYPE; QUANTITATIVE TRAIT LOCI;

ANIMALIA;

EID: 41249092421     PISSN: 09312668     EISSN: 14390388     Source Type: Journal    
DOI: 10.1111/j.1439-0388.2007.00705.x     Document Type: Article

References (24)

1. Bovenhuis H., Spelman R.J. (2000) Selective genotyping to detect quantitative trait loci for multiple traits in outbred populations. J. Dairy Sci., 83, 173 180.
2. Cardon L.R., Fulker D.W. (1994) The power of interval mapping of quantitative trait loci, using selected sib pairs. Am. J. Hum. Genet., 55, 825 833.
3. Casas E., Shackelford S.D., Keele J.W., Stone R.T., Kappes S.M., Koohmaraie M. (2000) Quantitative trait loci affecting growth and carcass composition of cattle segregating alternate forms of myostatin. J. Anim. Sci., 78, 560 569.
4. Casu S., Carta A., Elsen J.M. (2003) Strategies to optimize QTL detection designs in dairy sheep populations: The example of the Sarda breed. Options Mediterraneennes, A-55, 19 54.
5. Chatziplis D.G., Hamann H., Haley C.S. (2001) Selection and subsequent analysis of sib pair data for QTL detection. Genet. Res., 78, 177 186.
6. Darvasi A. (1997) The effect of selective genotyping on QTL mapping accuracy. Mamm. Genome, 8, 67 68.
7. Darvasi A., Soller M. (1992) Selective genotyping for determination of linkage between a marker locus and a quantitative trait locus. Theor. Appl. Genet., 85, 353 359.
8. Druet, T., Fritz S., Boichard D., Colleau J.J. (2006) Estimation of genetic parameters for quantitative trait loci for dairy traits in the French Holstein population. J.Dairy Sci., 89, 4070 4076.
9. Jansen R.C., Johnson D.L., J.A.M. van Arendonk (1998) Mixture model approach to the mapping of quantitative trait loci in complex populations with an application to multiple cattle families. Genetics, 148, 391 399.
10. Johnson D.L., Jansen R.C., J.A.M. van Arendonk (1999) Mapping quantitative trait loci in a selectively genotyped outbred population using a mixture model approach. Genet. Res., 73, 75 83.
11. Kinghorn B.P. (1997) An index of information content for genotype probabilities derived from segregation analysis. Genetics, 145, 479 483.
12. Kinghorn B.P. (1999) Use of segregation analysis to reduce genotyping costs. J. Anim. Breed. Genet., 116, 175 180.
13. Lander E.S., Botstein D. (1989) Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics, 121, 185 199.
14. Macrossan P.E. (2004) Strategies to Minimise DNA Testing Costs for Research and Development Programs Involving Pedigreed Populations. PhD Thesis. University of New England, Australia.
15. Madsen P., Jensen J. (2002) A User's Guide to DMU. A Package for Analysing Multivariate Mixed Models. Version 6, release 4.4. Danish Institute of Agricultural Sciences, Tjele, Denmark.
16. Martinez M.L., Vukasinovic N., Freeman A.E., Fernando R.L. (1998) Mapping QTL in outbred populations using selected samples. Genet. Sel. Evol., 30, 453 468.
17. Meuwissen T.H.E., Goddard M.E. (2000) Fine scale mapping of quantitative trait loci using linkage disequilibria with closely linked marker loci. Genetics, 155, 421 430.
18. Meuwissen T.H.E., Goddard M.E. (2001) Prediction of identity by descent probabilities from marker-haplotypes. Gen. Sel. Evol., 33, 605 634.
19. Muranty H., Goffinet B. (1997) Selective genotyping for location and estimation of the effect of a quantitative trait locus. Biometrics, 53, 629 643.
20. Piepho H.P. (2001) A quick method for computing approximate thresholds for quantitative trait loci detection. Genetics, 157, 425 432.
21. Ronin Y.I., Korol A.B., Weller J.I. (1998) Selective genotyping to detect quantitative trait loci affecting multiple traits: interval mapping analysis. Theor. Appl. Genet., 97, 1169 1178.
22. Sørensen P., Lund M.S., Guldbrandtsen B., Jensen J., Sorensen D. (2003) A comparison of bivariate and univariate QTL mapping in livestock populations. Genet. Sel. Evol., 35, 605 622.
23. Stella A., Boettcher P.J. (2004) Optimal designs for linkage disequilibrium mapping and candidate gene association tests in livestock populations. Genetics, 166, 341 350.
24. Van Gestel S., Houwing-Duistermaat J.J., Adolfsson R., van Duijn C.M., Van Broeckhoven C. (2000) Power of selective genotyping in genetic association analyses of quantitative traits. Behav. Genet., 30, 141 146.