Mapping quantitative trait loci in a selectively genotyped outbred population using a mixture model approach

Genetical Research

Volumn 73, Issue 1, 1999, Pages 75-83

  Johnson, David L ^a   Jansen, Ritsert C ^b   Van Arendonk, Johan A M ^b  

^a LIVESTOCK IMPROVEMENT CORPORATION   (New Zealand)

^b WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ALLELE; ARTICLE; CATTLE; CHROMOSOME 6; GENE LOCUS; GENE MAPPING; GENOTYPE; NONHUMAN; PHENOTYPE; QUANTITATIVE TRAIT; SYSTEM ANALYSIS;

EID: 0032976240     PISSN: 00166723     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0016672398003607     Document Type: Article

References (25)

1. Bovenhuis, H. & Spelman, R. J. (1998). Selective genotyping to detect QTL for multiple traits in outbred populations. Proceedings of the 6th World Congress on Genetics Applied to Livestock Production, Armidale, Australia 26, 241-244.
2. Bulmer, M. G. (1971). The effect of selection on genetic variability. American Naturalist 105, 201-211.
3. Churchill, G. A. & Doerge, R. W. (1994). Empirical threshold values for quantitative trait mapping. Genetics 138, 963-971.
4. Darvasi, A. & Soller, M. (1992). Selective genotyping for determination of linkage between a marker locus and a quantitative trait locus. Theoretical and Applied Genetics 85, 353-359.
5. Georges, M. D., Nielsen, D., Mackinnon, M., Mishra, R., Okimoto, R., et al. (1995). Mapping quantitative trait loci controlling milk production in dairy cattle by exploiting progeny testing. Genetics 139, 907-920.
6. Grignola, F. E., Hoeschele, I. & Tier, B. (1997). Mapping quantitative trait loci via residual maximum likelihood. 1. Methodology. Genetics, Selection, Evolution 28, 479-490.
7. Guo, S. W. & Thompson, E. A. (1992). A Monte Carlo method for combined segregation and linkage analysis. American Journal of Human Genetics 51, 1111-1126.
8. Hoeschele, I., Uimari, P., Grignola, F. E., Zhang, Q. & Gage, K. M. (1997). Advances in statistical methods to map quantitative trait loci in outbred populations. Genetics 147, 1445-1457.
9. Jansen, R. C. (1992). A general mixture model for mapping quantitative trait loci by using molecular markers. Theoretical and Applied Genetics 85, 252-260.
10. Jansen, R. C. (1996). A general Monte Carlo method for mapping quantitative trait loci. Genetics 142, 305-311.
11. Jansen, R. C., Johnson, D. L. & Van Arendonk, J. A. M. (1998). A mixture model approach to the mapping of quantitative trait loci in complex populations with an application to multiple cattle families. Genetics 148, 391-399.
12. Janss, L. L. G., Thompson, R. & Van Arendonk, J. A. M. (1995). Application of Gibbs sampling for inference in a major gene-polygenic inheritance model in animal populations. Theoretical and Applied Genetics 91, 1137-1147.
13. Knott, S. A., Elsen, J. M. & Haley, C. S. (1994). Multiple marker mapping of quantitative trait loci in half sib populations. Proceedings of the 5th World Congress on Genetics Applied to Livestock Production, Guelph, Canada 21, 33-56.
14. Knott, S. A., Elsen, J. M. & Haley, C. S. (1996). Methods for multiple-marker mapping of quantitative trait loci in half-sib populations. Theoretical and Applied Genetics 93, 71-80.
15. Lander, E. & Botstein, D. (1989). Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121, 185-199.
16. Lebowitz, R. J., Soller, M. & Beckmann, J. S. (1987). Trait-based analyses for the detection of linkage between marker loci and quantitative trait loci in crosses between inbred lines. Theoretical and Applied Genetics 73, 556-562.
17. Mackinnon, M. J. & Georges, M. A. J. (1992). The effects of selection on linkage analysis for quantitative traits. Genetics 132, 1177-1185.
18. Muranty, H. & Goffinet, B. (1997). Selective genotyping for location and estimation of the effect of a quantitative trait locus. Biometrics 53, 629-643.
19. Satagopan, J. M., Yandell, B. S., Newton, M. A. & Osborn, T. C. (1996). A Bayesian approach to detect quantitative trait loci using Markov Chain Monte Carlo. Genetics 144, 805-816.
20. Spelman, R. J., Coppieters, W., Karim, L., Van Arendonk, J. A. M. & Bovenhuis, H. (1996). Quantitative trait loci analysis for five milk production traits on chromosome six in the Dutch Holstein-Friesian population. Genetics 144, 1799-1808.
21. Thaller, G. & Hoeschele, I. (1996). A Monte Carlo method for Bayesian analysis of linkage between single markers and quantitative trait loci. 1. Methodology. Theoretical and Applied Genetics 93, 1161-1166.
22. Uimari, P., Thaller, G. & Hoeschele, I. (1996). The use of multiple markers in a Bayesian method for mapping quantitative trait loci. Genetics 143, 1831-1842.
23. VanRaden, P. M. & Wiggans, G. R. (1991). Derivation, calculation, and use of national animal model information. Journal of Dairy Science 74, 2737-2746.
24. Weller, J. I., Kashi, Y. & Soller, M. (1990). Power of daughter and granddaughter designs for determining linkage between marker loci and quantitative trait loci in dairy cattle. Journal of Dairy Science 73, 2525-2537.
25. Xu, S. (1996). Computation of the full likelihood function for estimating variance at a quantitative trait locus. Genetics 144, 1951-1960.