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Volumn 378, Issue 1, 2008, Pages 12-19

The Integrity of the Sarcin/Ricin Domain of 23 S Ribosomal RNA Is Not Required for Elongation Factor-independent Peptide Synthesis

Author keywords

elongation factors; factor independent peptide synthesis; ribosomes; sarcin ricin domain of 23 S rRNA

Indexed keywords

ELONGATION FACTOR; RIBOSOME RNA; RICIN;

EID: 41149166557     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2008.02.016     Document Type: Article
Times cited : (9)

References (39)
  • 1
    • 0014429709 scopus 로고
    • Studies on the formation of transfer ribonucleic acid-ribosome complexes. III. The formation of peptide bonds by ribosomes in the absence of supernatant enzymes
    • Pestka S. Studies on the formation of transfer ribonucleic acid-ribosome complexes. III. The formation of peptide bonds by ribosomes in the absence of supernatant enzymes. J. Biol. Chem. 243 (1968) 2810-2820
    • (1968) J. Biol. Chem. , vol.243 , pp. 2810-2820
    • Pestka, S.1
  • 2
    • 0014690239 scopus 로고
    • Studies on the formation of transfer ribonucleic acid-ribosome complexes. VI. Oligopeptide synthesis and translocation on ribosomes in the presence and absence of soluble transfer factors
    • Pestka S. Studies on the formation of transfer ribonucleic acid-ribosome complexes. VI. Oligopeptide synthesis and translocation on ribosomes in the presence and absence of soluble transfer factors. J. Biol. Chem. 244 (1969) 1533-1539
    • (1969) J. Biol. Chem. , vol.244 , pp. 1533-1539
    • Pestka, S.1
  • 3
    • 0001420054 scopus 로고
    • Stimulation of "non-enzymic" translocation in ribosomes by p-chloromercuribenzoate
    • Gavrilova L.P., and Spirin A.S. Stimulation of "non-enzymic" translocation in ribosomes by p-chloromercuribenzoate. FEBS Lett. 17 (1971) 324-326
    • (1971) FEBS Lett. , vol.17 , pp. 324-326
    • Gavrilova, L.P.1    Spirin, A.S.2
  • 4
    • 84886634813 scopus 로고
    • Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes
    • Gavrilova L.P., Kostiashkina O.E., Koteliansky V.E., Rutkevitch N.M., and Spirin A.S. Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes. J. Biol. Chem. 101 (1976) 537-552
    • (1976) J. Biol. Chem. , vol.101 , pp. 537-552
    • Gavrilova, L.P.1    Kostiashkina, O.E.2    Koteliansky, V.E.3    Rutkevitch, N.M.4    Spirin, A.S.5
  • 5
    • 0036926943 scopus 로고    scopus 로고
    • EFG-independent translocation of the mRNA:tRNA complex is promoted by modification of the ribosome with thiol-specific reagents
    • Southworth D.R., Brunelle J.L., and Green R. EFG-independent translocation of the mRNA:tRNA complex is promoted by modification of the ribosome with thiol-specific reagents. J. Mol. Biol. 324 (2002) 611-623
    • (2002) J. Mol. Biol. , vol.324 , pp. 611-623
    • Southworth, D.R.1    Brunelle, J.L.2    Green, R.3
  • 6
    • 0042173407 scopus 로고    scopus 로고
    • Ribosomal proteins S12 and S13 function as control elements for translocation of the mRNA:tRNA complex
    • Cukras A.R., Southworth D.R., Brunelle J.L., Culver G.M., and Green R. Ribosomal proteins S12 and S13 function as control elements for translocation of the mRNA:tRNA complex. Mol. Cell 12 (2003) 321-328
    • (2003) Mol. Cell , vol.12 , pp. 321-328
    • Cukras, A.R.1    Southworth, D.R.2    Brunelle, J.L.3    Culver, G.M.4    Green, R.5
  • 7
    • 0001358802 scopus 로고
    • RNA codewords and protein synthesis. The effect of trinucleotides upon the binding of sRNA to ribosomes
    • Nirenberg M., and Leder P. RNA codewords and protein synthesis. The effect of trinucleotides upon the binding of sRNA to ribosomes. Science 145 (1964) 1399-1407
    • (1964) Science , vol.145 , pp. 1399-1407
    • Nirenberg, M.1    Leder, P.2
  • 8
    • 0014026971 scopus 로고
    • Studies on the formation of transfer ribonucleic acid-ribosome complexes. I. The effect of streptomycin and ribosomal dissociation on 14C-aminoacyl transfer ribonucleic acid binding to ribosomes
    • Pestka S. Studies on the formation of transfer ribonucleic acid-ribosome complexes. I. The effect of streptomycin and ribosomal dissociation on 14C-aminoacyl transfer ribonucleic acid binding to ribosomes. J. Biol. Chem. 241 (1966) 367-372
    • (1966) J. Biol. Chem. , vol.241 , pp. 367-372
    • Pestka, S.1
  • 9
    • 0032535207 scopus 로고    scopus 로고
    • Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome
    • Pape T., Wintermeyer W., and Rodnina M.V. Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome. EMBO J. 17 (1998) 7490-7497
    • (1998) EMBO J. , vol.17 , pp. 7490-7497
    • Pape, T.1    Wintermeyer, W.2    Rodnina, M.V.3
  • 10
    • 0035252889 scopus 로고    scopus 로고
    • Ribosome fidelity: tRNA discrimination, proofreading and induced fit
    • Rodnina M.V., and Wintermeyer W. Ribosome fidelity: tRNA discrimination, proofreading and induced fit. Trends Biochem. Sci. 26 (2001) 124-130
    • (2001) Trends Biochem. Sci. , vol.26 , pp. 124-130
    • Rodnina, M.V.1    Wintermeyer, W.2
  • 12
    • 0033578939 scopus 로고    scopus 로고
    • The two faces of the Escherichia coli 23 S rRNA sarcin/ricin domain: the structure at 1.11 Å resolution
    • Correll C.C., Wool I.G., and Munishkin A. The two faces of the Escherichia coli 23 S rRNA sarcin/ricin domain: the structure at 1.11 Å resolution. J. Mol. Biol. 292 (1999) 275-287
    • (1999) J. Mol. Biol. , vol.292 , pp. 275-287
    • Correll, C.C.1    Wool, I.G.2    Munishkin, A.3
  • 13
    • 0020479406 scopus 로고
    • The site of action of alpha-sarcin on eukaryotic ribosomes. The sequence at the alpha-sarcin cleavage site in 28 S ribosomal ribonucleic acid
    • Endo Y., and Wool I.G. The site of action of alpha-sarcin on eukaryotic ribosomes. The sequence at the alpha-sarcin cleavage site in 28 S ribosomal ribonucleic acid. J. Biol. Chem. 257 (1982) 9054-9060
    • (1982) J. Biol. Chem. , vol.257 , pp. 9054-9060
    • Endo, Y.1    Wool, I.G.2
  • 14
    • 0021100286 scopus 로고
    • The sequence of the nucleotides at the alpha-sarcin cleavage site in rat 28 S ribosomal ribonucleic acid
    • Chan Y.L., Endo Y., and Wool I.G. The sequence of the nucleotides at the alpha-sarcin cleavage site in rat 28 S ribosomal ribonucleic acid. J. Biol. Chem. 258 (1983) 12768-12770
    • (1983) J. Biol. Chem. , vol.258 , pp. 12768-12770
    • Chan, Y.L.1    Endo, Y.2    Wool, I.G.3
  • 15
    • 0026690643 scopus 로고
    • Ribotoxin recognition of ribosomal RNA and a proposal for the mechanism of translocation
    • Wool I.G., Gluck A., and Endo Y. Ribotoxin recognition of ribosomal RNA and a proposal for the mechanism of translocation. Trends Biochem. Sci. 17 (1992) 266-269
    • (1992) Trends Biochem. Sci. , vol.17 , pp. 266-269
    • Wool, I.G.1    Gluck, A.2    Endo, Y.3
  • 16
    • 0023219950 scopus 로고
    • RNA N-glycosidase activity of ricin A-chain. Mechanism of action of the toxic lectin ricin on eukaryotic ribosomes
    • Endo Y., and Tsurugi K. RNA N-glycosidase activity of ricin A-chain. Mechanism of action of the toxic lectin ricin on eukaryotic ribosomes. J. Biol. Chem. 262 (1987) 8128-8130
    • (1987) J. Biol. Chem. , vol.262 , pp. 8128-8130
    • Endo, Y.1    Tsurugi, K.2
  • 17
    • 0023947126 scopus 로고
    • The RNA N-glycosidase activity of ricin A-chain. The characteristics of the enzymatic activity of ricin A-chain with ribosomes and with rRNA
    • Endo Y., and Tsurugi K. The RNA N-glycosidase activity of ricin A-chain. The characteristics of the enzymatic activity of ricin A-chain with ribosomes and with rRNA. J. Biol. Chem. 263 (1988) 8735-8739
    • (1988) J. Biol. Chem. , vol.263 , pp. 8735-8739
    • Endo, Y.1    Tsurugi, K.2
  • 18
    • 0023664263 scopus 로고
    • The mechanism of action of ricin and related toxic lectins on eukaryotic ribosomes. The site and the characteristics of the modification in 28 S ribosomal RNA caused by the toxins
    • Endo Y., Mitsui K., Motizuki M., and Tsurugi K. The mechanism of action of ricin and related toxic lectins on eukaryotic ribosomes. The site and the characteristics of the modification in 28 S ribosomal RNA caused by the toxins. J. Biol. Chem. 262 (1987) 5908-5912
    • (1987) J. Biol. Chem. , vol.262 , pp. 5908-5912
    • Endo, Y.1    Mitsui, K.2    Motizuki, M.3    Tsurugi, K.4
  • 19
    • 2942571539 scopus 로고    scopus 로고
    • The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
    • Cannone J.J., Subramanian S., Schnare M.N., Collett J.R., D'Souza L.M., Du Y., et al. The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 3 (2002) 15
    • (2002) BMC Bioinformatics , vol.3 , pp. 15
    • Cannone, J.J.1    Subramanian, S.2    Schnare, M.N.3    Collett, J.R.4    D'Souza, L.M.5    Du, Y.6
  • 20
    • 0017405550 scopus 로고
    • Effects of some proteins that inactivate the eukaryotic ribosome
    • Fernandez-Puentes C., and Vazquez D. Effects of some proteins that inactivate the eukaryotic ribosome. FEBS Lett. 78 (1977) 143-146
    • (1977) FEBS Lett. , vol.78 , pp. 143-146
    • Fernandez-Puentes, C.1    Vazquez, D.2
  • 21
    • 0002169483 scopus 로고
    • Toxic lectins and related proteins
    • Cohen P., and van Heynigen S. (Eds), Elsevier Biomedical Press, New York
    • Olsnes S., and Pihl A. Toxic lectins and related proteins. In: Cohen P., and van Heynigen S. (Eds). The Molecular Action of Toxins and Viruses (1982), Elsevier Biomedical Press, New York 51-105
    • (1982) The Molecular Action of Toxins and Viruses , pp. 51-105
    • Olsnes, S.1    Pihl, A.2
  • 22
    • 0023405923 scopus 로고
    • Evidence that the G2661 region of 23S rRNA is located at the ribosomal binding sites of both elongation factors
    • Hausner T.P., Atmadja J., and Nierhaus K.H. Evidence that the G2661 region of 23S rRNA is located at the ribosomal binding sites of both elongation factors. Biochimie 69 (1987) 911-923
    • (1987) Biochimie , vol.69 , pp. 911-923
    • Hausner, T.P.1    Atmadja, J.2    Nierhaus, K.H.3
  • 23
    • 0023722010 scopus 로고
    • Interaction of elongation factors EF-G and EF-Tu with a conserved loop in 23S RNA
    • Moazed D., Robertson J.M., and Noller H.F. Interaction of elongation factors EF-G and EF-Tu with a conserved loop in 23S RNA. Nature 334 (1988) 362-364
    • (1988) Nature , vol.334 , pp. 362-364
    • Moazed, D.1    Robertson, J.M.2    Noller, H.F.3
  • 24
    • 0033593240 scopus 로고    scopus 로고
    • The phenotype of mutations of G2655 in the sarcin/ricin domain of 23 S ribosomal RNA
    • Macbeth M.R., and Wool I.G. The phenotype of mutations of G2655 in the sarcin/ricin domain of 23 S ribosomal RNA. J. Mol. Biol. 285 (1999) 965-975
    • (1999) J. Mol. Biol. , vol.285 , pp. 965-975
    • Macbeth, M.R.1    Wool, I.G.2
  • 25
    • 0034685615 scopus 로고    scopus 로고
    • The phenotype of mutations of the base-pair C2658.G2663 that closes the tetraloop in the sarcin/ricin domain of Escherichia coli 23 S ribosomal RNA
    • Chan Y.L., Sitikov A.S., and Wool I.G. The phenotype of mutations of the base-pair C2658.G2663 that closes the tetraloop in the sarcin/ricin domain of Escherichia coli 23 S ribosomal RNA. J. Mol. Biol. 298 (2000) 795-805
    • (2000) J. Mol. Biol. , vol.298 , pp. 795-805
    • Chan, Y.L.1    Sitikov, A.S.2    Wool, I.G.3
  • 26
    • 0030774277 scopus 로고    scopus 로고
    • The ribosome-in-pieces: binding of elongation factor EF-G to oligoribonucleotides that mimic the sarcin/ricin and thiostrepton domains of 23S ribosomal RNA
    • Munishkin A., and Wool I.G. The ribosome-in-pieces: binding of elongation factor EF-G to oligoribonucleotides that mimic the sarcin/ricin and thiostrepton domains of 23S ribosomal RNA. Proc. Natl Acad. Sci. USA 94 (1997) 12280-12284
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 12280-12284
    • Munishkin, A.1    Wool, I.G.2
  • 27
    • 0016286549 scopus 로고
    • Ribosomal protein S12 and 'non-enzymatic' translocation
    • Gavrilova L.P., Koteliansky V.E., and Spirin A.S. Ribosomal protein S12 and 'non-enzymatic' translocation. FEBS Lett. 45 (1974) 324-328
    • (1974) FEBS Lett. , vol.45 , pp. 324-328
    • Gavrilova, L.P.1    Koteliansky, V.E.2    Spirin, A.S.3
  • 28
    • 0015950729 scopus 로고
    • Interaction of SH-reagents with the ribosomal 30 S subparticle and 'non-enzymatic' translocation
    • Gavrilova L.P., and Spirin A.S. Interaction of SH-reagents with the ribosomal 30 S subparticle and 'non-enzymatic' translocation. FEBS Lett. 39 (1974) 13-16
    • (1974) FEBS Lett. , vol.39 , pp. 13-16
    • Gavrilova, L.P.1    Spirin, A.S.2
  • 29
    • 0031028688 scopus 로고    scopus 로고
    • Hydrolysis of GTP by elongation factor G drives tRNA movement on the ribosome
    • Rodnina M.V., Savelsbergh A., Katunin V.I., and Wintermeyer W. Hydrolysis of GTP by elongation factor G drives tRNA movement on the ribosome. Nature 385 (1997) 37-41
    • (1997) Nature , vol.385 , pp. 37-41
    • Rodnina, M.V.1    Savelsbergh, A.2    Katunin, V.I.3    Wintermeyer, W.4
  • 30
    • 0014378880 scopus 로고
    • The origin of the genetic code
    • Crick F.H. The origin of the genetic code. J. Mol. Biol. 38 (1968) 367-379
    • (1968) J. Mol. Biol. , vol.38 , pp. 367-379
    • Crick, F.H.1
  • 31
    • 0029974453 scopus 로고    scopus 로고
    • Extraribosomal functions of ribosomal proteins
    • Wool I.G. Extraribosomal functions of ribosomal proteins. Trends Biochem. Sci. 21 (1996) 164-165
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 164-165
    • Wool, I.G.1
  • 32
    • 0001320597 scopus 로고    scopus 로고
    • Mammalian ribosomes: the sturcture and the evolution of the proteins
    • Hersey J.W.B., Mathews M.B., and Sonenberg N. (Eds), CSHL Press, Cold Spring Harbor, NY
    • Wool I.G., Chan Y.L., and Gluck A. Mammalian ribosomes: the sturcture and the evolution of the proteins. In: Hersey J.W.B., Mathews M.B., and Sonenberg N. (Eds). Translational Control (1996), CSHL Press, Cold Spring Harbor, NY 685-731
    • (1996) Translational Control , pp. 685-731
    • Wool, I.G.1    Chan, Y.L.2    Gluck, A.3
  • 33
    • 0002477677 scopus 로고
    • Isolation and analysis of ribosomes from prokaryotes, eukaryotes, and organelles
    • Speddings G. (Ed), Oxford University Press, Oxford, England
    • Spedding G. Isolation and analysis of ribosomes from prokaryotes, eukaryotes, and organelles. In: Speddings G. (Ed). Ribosomes and Protein Synthesis - A Practical Approach (1990), Oxford University Press, Oxford, England 1-29
    • (1990) Ribosomes and Protein Synthesis - A Practical Approach , pp. 1-29
    • Spedding, G.1
  • 34
    • 0021111605 scopus 로고
    • The ribonuclease activity of the cytotoxin alpha-sarcin. The characteristics of the enzymatic activity of alpha-sarcin with ribosomes and ribonucleic acids as substrates
    • Endo Y., Huber P.W., and Wool I.G. The ribonuclease activity of the cytotoxin alpha-sarcin. The characteristics of the enzymatic activity of alpha-sarcin with ribosomes and ribonucleic acids as substrates. J. Biol. Chem. 258 (1983) 2662-2667
    • (1983) J. Biol. Chem. , vol.258 , pp. 2662-2667
    • Endo, Y.1    Huber, P.W.2    Wool, I.G.3
  • 35
    • 0029561680 scopus 로고
    • The action of pokeweed antiviral protein and ricin A-chain on mutants in the alpha-sarcin loop of Escherichia coli 23 S ribosomal RNA
    • Marchant A., and Hartley M.R. The action of pokeweed antiviral protein and ricin A-chain on mutants in the alpha-sarcin loop of Escherichia coli 23 S ribosomal RNA. J. Mol. Biol. 254 (1995) 848-855
    • (1995) J. Mol. Biol. , vol.254 , pp. 848-855
    • Marchant, A.1    Hartley, M.R.2
  • 36
    • 0016008661 scopus 로고
    • Assay for nonenzymatic and enzymatic translocation with Escherichia coli ribosomes
    • Pestka S. Assay for nonenzymatic and enzymatic translocation with Escherichia coli ribosomes. Methods Enzymol. 30 (1974) 462-470
    • (1974) Methods Enzymol. , vol.30 , pp. 462-470
    • Pestka, S.1
  • 38
    • 0025012472 scopus 로고
    • Dominant lethal mutations in a conserved loop in 16 S rRNA
    • Powers T., and Noller H.F. Dominant lethal mutations in a conserved loop in 16 S rRNA. Proc. Natl Acad. Sci. USA 87 (1990) 1042-1046
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 1042-1046
    • Powers, T.1    Noller, H.F.2
  • 39
    • 0024271795 scopus 로고
    • Antibiotic resistance mutations in ribosomal RNA genes of Escherichia coli
    • Sigmund C.D., Ettayebi M., Borden A., and Morgan E.A. Antibiotic resistance mutations in ribosomal RNA genes of Escherichia coli. Methods Enzymol. 164 (1988) 673-690
    • (1988) Methods Enzymol. , vol.164 , pp. 673-690
    • Sigmund, C.D.1    Ettayebi, M.2    Borden, A.3    Morgan, E.A.4


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