Protein structure determination from 13C spin-diffusion solid-state NMR spectroscopy

Journal of the American Chemical Society

Volumn 130, Issue 12, 2008, Pages 3959-3966

  Manolikas, Theofanis ^a   Herrmann, Torsten ^a   Meier, Beat H ^a  

^a ETH ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSTRUCTURE; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; SIGNAL TO NOISE RATIO; SOLID STATE REACTIONS;

ATOMIC-RESOLUTION STRUCTURE; AUTOMATIC OPTIMIZATION; INTERNUCLEAR DISTANCES; PROTON-DRIVEN C SPIN DIFFUSION (PDSD);

PROTEINS;

ARTICLE; CARBON NUCLEAR MAGNETIC RESONANCE; CRYSTAL STRUCTURE; PROTEIN STRUCTURE; SIGNAL NOISE RATIO; SPECTROSCOPY;

CARBON ISOTOPES; CRYSTALLOGRAPHY, X-RAY; DIFFUSION; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; UBIQUITIN;

EID: 41149160723     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja078039s     Document Type: Article

References (52)

1. Castellani, F.; van Rossum, B.; Diehl, A.; Schubert, M.; Rehbein, K.; Oschkinat, H. Nature 2002, 420 (6911), 98-102.
2. Castellani, F.; van Rossum, B. J.; Diehl, A.; Rehbein, K.; Oschkinat, H. Biochemistry 2003, 42 (39), 11476-11483.
3. Lange, A.; Becker, S.; Seidel, K.; Giller, K.; Pongs, O.; Baldus, M. Angew. Chem., Int. Ed. 2005, 44 (14), 2089-2092.
4. Zech, S. G.; Wand, A. J.; McDermott, A. E. J. Am. Chem. Soc. 2005, 127 (24), 8618-8626.
5. Rienstra, C. M.; Tucker-Kellogg, L.; Jaroniec, C. P.; Hohwy, M.; Reif, B.; McMahon, M. T.; Tidor, B.; Lozano-Perez, T.; Griffin, R. G. Proc. Natl. Acad. Sci. U.S.A. 2002, 99 (16), 10260-10265.
6. Jaroniec, C. P.; MacPhee, C. E.; Bajaj, V. S.; McMahon, M. T.; Dobson, C. M.; Griffin, R. G. Proc. Natl. Acad. Sci. U.S.A 2004, 101 (3), 711-716.
7. Siemer, A. B.; Ritter, C.; Ernst, M.; Riek, R.; Meier, B. H. Angew. Chem., Int. Ed. 2005, 44 (16), 2441-2444.
8. Etzkorn, M.; Martell, S.; Andronesi, O. C.; Seidel, K.; Engelhard, M.; Baldus, M. Angew. Chem., Int. Ed. 2007, 46 (3), 459-462.
9. Wufhrich, K. J. Biomol. NMR 2003, 27 (1), 13-39.
10. Detken, A.; Hardy, E. H.; Ernst, M.; Kainosho, M.; Kawakami, T.; Aimoto, S.; Meier, B. H. J. Biomol. NMR 2001, 20 (3), 203-221.
11. Pauli, J.; Baldus, M.; van Rossum, B.; de Groot, H.; Oschkinat, H. ChemBioChem 2001, 2 (4), 272-281.
12. van Rossum, B. J.; Castellani, F.; Pauli, J.; Rehbein, K.; Hollander, J.; de Groot, H. J. M.; Oschkinat, H. J. Biomol. NMR 2003, 25 (3), 217-223.
13. Böckmann, A.; Lange, A.; Galinier, A.; Luca, S.; Giraud, N.; Juy, M.; Heise, H.; Montserret, R.; Penin, F.; Baldus, M. J. Biomol. NMR 2003, 27 (4), 323-339.
14. Igumenova, T. I.; Wand, A. J.; McDermott, A. E. J. Am. Chem. Soc. 2004, 126 (16), 5323-5331.
15. Igumenova, T. I.; McDermott, A. E.; Zilm, K. W.; Martin, R. W.; Paulson, E. K.; Wand, A. J. J. Am. Chem. Soc. 2004, 126 (21), 6720-6727.
16. Gammeren, A. J. v.; Hulsbergen, F. B.; Hollander, J. G.; Groot, H. J. M. d. J. Biomol. NMR 2005, 31 (4), 279-293.
17. Pintacuda, G.; Giraud, N.; Pierattelli, R.; Bockmann, A.; Bertini, I.; Emsley, L. Angew. Chem., Int. Ed. 2007, 46 (7), 1079-1082.
18. Meier, B. H. Polarization Transfer and Spin Diffusion in Solid-State NMR. In Advances in Magnetic and Optical Resonance; Warren, W. S., Ed.; Academic Press, New York, 1994; Vol. 18, pp 1-116.
19. Takegoshi, K.; Nakamura, S.; Terao, T. Chem. Phys. Lett. 2001, 344 (5-6), 631-637.
20. Lange, A.; Luca, S.; Baldus, M. J. Am. Chem. Soc. 2002, 124 (33), 9704-9705.
21. Jeener, J.; Meier, B. H.; Bachmann, P.; Ernst, R. R. J. Chem. Phys. 1979, 71 (11), 4546.
22. Bloembergen, N. Physica 1949, 15, 386.
23. Ernst, M.; Meier, B. H. Spin Diffusion in Solids. In Solid State NMR of Polymers; Ando, I., Asakura, T., Eds.; Elsevier: Amsterdam, 1998; Vol. 84.
24. Suter, D.; Ernst, R. R. Phys. Rev. B: Condens. Matter Mater. Phys. 1985, 32 (9), 5608.
25. Gan, Z.; Ernst, R. R. Chem. Phys. Lett. 1996, 253, 13-19.
26. Grommek, A.; Meier, B. H.; Ernst, M. Chem. Phys. Lett. 2006, 427 (4- 6), 404-409.
27. Abragam, A. The Principles of Nuclear Magnetism; Clarendon Press: Oxford, 1961.
28. Fermi, E. Nuclear Physics; University of Chicago Press: Chicago, 1950.
29. Hohwy, M.; Rienstra, C. M.; Jaroniec, C. P.; Griffin, R. G. J. Chem. Phys. 1999, 110 (16), 7983-7992.
30. Schubert, M.; Manolikas, T.; Rogowski, M.; Meier, B. H. J. Biomol. NMR 2006, 35, 167-173.
31. Hediger, S.; Meier, B. H.; Ernst, R. R. Chem. Phys. Lett. 1995, 240, 449.
32. Fung, B. M.; Khitrin, A. K.; Ermolaev, K. J. Magn. Reson. 2000, 142 (1), 97-101.
33. Keller, R. L. J. The Computer Aided Resonance Assignment Tutorial (see also http://www.nmr.ch); Cantina Verlag: Goldau, Switzerland, 2004.
34. Herrmann, T.; Güntert, P.; Wüthrich, K. J. Biomol. NMR 2002, 24 (3), 171-189.
35. Herrmann, T.; Guntert, P.; Wuthrich, K. J. Mol. Biol. 2002, 319 (1), 209-227.
36. Nilges, M. Folding Des. 1997, 2 (4), S53-S57.
37. Guntert, P.; Mumenthaler, C.; Wuthrich, K. J. Mol. Biol. 1997, 273 (1), 283-298.
38. Spera, S.; Bax, A. J. Am. Chem. Soc. 1991, 113, 5490-5492.
39. Luginbuhl, P.; Szyperski, T.; Wuthrich, K. J. Magn. Reson., Ser. B 1995, 109 (2), 229-233.
40. Güntert, P. Automated NMR Structure Calculation With CYANA. In Methods in Molecular Biology; Downing, A. K., Ed.; Humana Press: Totowa, NJ, 2004; Vol. 278, pp 353-378.
41. Luginbuhl, P.; Guntert, P.; Billeter, M.; Wuthrich, K. J. Biomol. NMR 1996, 8 (2), 136-146.
42. Konradi, R.; Billeter, M.; Günthert, P. Comput. Phys. Commun. 2000, 124, 139-147.
43. Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Gould, I. R.; Merz, K. M.; Ferguson, D. M.; Spellmeyer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. J. Am. Chem. Soc. 1995, 117 (19), 5179-5197.
44. Konradi, R.; Billeter, M.; Wuthrich, K. J. Mol. Graph. 1996, 14, 51-55.
45. Guntert, P.; Braun, W.; Wuthrich, K. J. Mol. Biol. 1991, 217 (3), 517-530.
46. Wuthrich, K.; Billeter, M.; Braun, W. J. Mol. Biol. 1983, 169 (4), 949-961.
47. Wuthrich, K. NMR of Proteins and Nucleic Adds; Wiley: New York, 1986.
48. Cornilescu, G.; Delaglio, F.; Bax, A. J. Biomol. NMR 1999, 13 (3), 289-302.
49. Vijay-Kumar, S.; Bugg, C. E.; Wilkinson, K. D.; Vierstra, R. D.; Hatfield, P. M.; Cook, W. J. J. Biol. Chem. 1987, 262 (13), 6396-6399.
50. Boelens, R.; Koning, T. M. G.; Kaptein, R. J. Mol. Struct. 1988, 173, 299-311.
51. Borgias, B. A.; James, T. L. J. Magn. Reson. 1990, 87 (3), 475-487.
52. Linge, J. P.; Habeck, M.; Rieping, W.; Nilges, M. J. Magn. Reson. 2004, 167 (2), 334-342.