Current and emerging mass-spectrometry technologies for metabolomics

TrAC - Trends in Analytical Chemistry

Volumn 27, Issue 3, 2008, Pages 238-250

  Bedair, Mohamed ^a   Sumner, Lloyd W ^a  

^a PLANT BIOLOGY DIVISION   (United States)

Author keywords

Mass spectrometry; Metabolic fingerprinting; Metabolic profiling; Metabolite fingerprinting; Metabolite profiling; Metabolomics

Indexed keywords

CHROMATOGRAPHY; MASS SPECTROMETRY;

METABOLIC FINGERPRINTING; METABOLIC PROFILING; METABOLOMICS;

METABOLISM;

ARTICLE; CHROMATOGRAPHY; DNA FINGERPRINTING; DRUG MIXTURE; FEMALE; HUMAN; ION MOBILITY SPECTROMETRY; IONIZATION; MASS SPECTROMETRY; METABOLITE; METABOLOMICS; MOUSE; NONHUMAN; PRIORITY JOURNAL;

EID: 41049099137     PISSN: 01659936     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.trac.2008.01.006     Document Type: Article

References (115)

1. Seger C., and Sturm S. J. Proteome Res. 6 (2007) 480
2. Lenz E.M., and Wilson I.D. J. Proteome Res. 6 (2007) 443
3. Dettmer K., Aronov P.A., and Hammock B.D. Mass Spectrom. Rev. 26 (2007) 51
4. Hollywood D.R.B.K., and Goodacre R. Proteomics 6 (2006) 4716
5. Villas-Boas Silas G., Mas S., Akesson M., Smedsgaard J., and Nielsen J. Mass Spectrom. Rev. 24 (2005) 613
6. Dunn W.B., and Ellis D.I. Trends Anal. Chem. 24 (2005) 285
7. Ramautar R., Demirci A., and de Jong G.J. Trends Anal. Chem. 25 (2006) 455
8. Southam A.D., Payne T.G., Cooper H.J., Arvanitis T.N., and Viant M.R. Anal. Chem. 79 (2007) 4595
9. Van Pelt C.K., Zhang S., Fung E., Chu I., Liu T., Li C., Korfmacher W.A., and Henion J. Rapid Commun. Mass Spectrom. 17 (2003) 1573
10. Breitling R., Pitt A.R., and Barrett M.P. Trends Biotech. 24 (2006) 543
11. Stephen C.B., Kruppa G., and Dasseux J.-L. Mass Spectrom. Rev. 24 (2005) 223
12. Aharoni A., de Vos C.H.R., Verhoeven H.A., Maliepaard C.A., Kruppa G., Bino R., and Goodenowe D.B. OMICS 6 (2002) 217
13. Marshall A.G., Hendrickson C.L., and Jackson G.S. Mass Spectrom. Rev. 17 (1998) 1
14. Hu Q., Noll R.J., Li H., Makarov A., Hardman M., and Cooks R.G. J. Mass Spectrom. 40 (2005) 430
15. Lim H.-K., Chen J., Sensenhauser C., Cook K., and Subrahmanyam V. Rapid Commun. Mass Spectrom. 21 (2007) 1821
16. Peterman S.M., Duczak Jr. N., Kalgutkar A.S., Lame M.E., and Soglia J.R. J. Am. Soc. Mass Spectrom. 17 (2006) 363
17. Thevis M., Wilkens F., Geyer H., and Schänzer W. Rapid Commun. Mass Spectrom. 20 (2006) 3393
18. Ejsing C.S., Moehring T., Bahr U., Duchoslav E., Karas M., Simons K., and Shevchenko A. J. Mass Spectrom. 41 (2006) 372
19. Koulman A., Tapper B.A., Fraser K., Cao M.S., Lane G.A., and Rasmussen S. Rapid Commun. Mass Spectrom. 21 (2007) 421
20. Mas S., Villas-Boas S.G., Hansen M.E., Akesson M., and Nielsen J. Biotech. Bioeng. 96 (2007) 1014
21. Mattoli L., Cangi F., Maidecchi A., Ghiara C., Ragazzi E., Tubaro M., Stella L., Tisato F., and Traldi P. J. Mass Spectrom. 41 (2006) 1534
22. Jones J.J., Borgmann S., Wilkins C.L., and O'Brien R.M. Anal. Chem. 78 (2006) 3062
23. Fraser P.D., Enfissi E.M.A., Goodfellow M., Eguchi T., and Bramley P.M. Plant J. 49 (2007) 552
24. Lerouxel O., Choo T.S., Seveno M., Usadel B., Faye L., Lerouge P., and Pauly M. Plant Physiol. 130 (2002) 1754
25. Vaidyanathan S., Jones D., Ellis J., Jenkins T., Chong C., Anderson M., and Goodacre R. Rapid Commun. Mass Spectrom. 21 (2007) 2157
26. Edwards J.L., and Kennedy R.T. Anal. Chem. 77 (2005) 2201
27. Sun G., Yang K., Zhao Z., Guan S., Han X., and Gross R.W. Anal. Chem. 79 (2007) 6629
28. Vaidyanathan S., and Goodacre R. Rapid Commun. Mass Spectrom. 21 (2007) 2072
29. Reyzer M.L., and Caprioli R.M. Curr. Opin. Chem. Biol. 11 (2007) 29
30. Rubakhin S.S., Jurchen J.C., Monroe E.B., and Sweedler J.V. Drug Discov. Today 10 (2005) 823
31. Hsieh Y., Casale R., Fukuda E., Chen J.W., Knemeyer I., Wingate J., Morrison R., and Korfmacher W. Rapid Commun. Mass Spectrom. 20 (2006) 965
32. Khatib-Shahidi S., Andersson M., Herman J.L., Gillespie T.A., and Caprioli R.M. Anal. Chem. 78 (2006) 6448
33. Li Y., Shrestha B., and Vertes A. Anal. Chem. 79 (2007) 523
34. Takats Z., Wiseman J.M., Gologan B., and Cooks R.G. Science (Washington, D.C.) 306 (2004) 471
35. Takats Z., Wiseman J.M., and Cooks R.G. J. Mass Spectrom. 40 (2005) 1261
36. Cooks R.G., Ouyang Z., Takats Z., and Wiseman J.M. Science (Washington, D.C.) 311 (2006) 1566
37. Chen H., Pan Z., Talaty N., Raftery D., and Cooks R.G. Rapid Commun. Mass Spectrom. 20 (2006) 1577
38. Pan Z.Z., Gu H.W., Talaty N., Chen H.W., Shanaiah N., Hainline B.E., Cooks R.G., and Raftery D. Anal. Bioanal. Chem. 387 (2007) 539
39. Kauppila T.J., Talaty N., Kuuranne T., Kotiaho T., Kostiainen R., and Cooks R.G. Analyst (Cambridge, UK) 132 (2007) 868
40. Talaty N., Takats Z., and Cooks R.G. Analyst (Cambridge, UK) 130 (2005) 1624
41. Wiseman J.M., Puolitaival S.M., Takáts Z., Cooks R.G., and Caprioli R.M. Angew. Chem., Int. Ed. Engl. 44 (2005) 7094
42. Chen H., Venter A., and Cooks R.G. Chem. Commun. (2006) 2042
43. Gu H., Chen H., Pan Z., Jackson A.U., Talaty N., Xi B., Kissinger C., Duda C., Mann D., Raftery D., and Cooks R.G. Anal. Chem. 79 (2007) 89
44. Kopka J. J. Biotech. 124 (2006) 312
45. Halket J.M., Waterman D., Przyborowska A.M., Patel R.K.P., Fraser P.D., and Bramley P.M. J. Exp. Bot. 56 (2005) 219
46. Broeckling C.D., Huhman D.V., Farag M.A., Smith J.T., May G.D., Mendes P., Dixon R.A., and Sumner L.W. J. Exp. Bot. 56 (2005) 323
47. Glassop D., Roessner U., Bacic A., and Bonnett G.D. Plant Cell Physiol. 48 (2007) 573
48. Marriott P., and Shellie R. Trends Anal. Chem. 21 (2002) 573
49. Hoggard J.C., and Synovec R.E. Anal. Chem. 79 (2007) 1611
50. Pierce K.M., Hoggard J.C., Hope J.L., Rainey P.M., Hoofnagle A.N., Jack R.M., Wright B.W., and Synovec R.E. Anal. Chem. 78 (2006) 5068
51. Hagan S.O., Dunn W.B., Knowles J.D., Broadhurst D., Williams R., Ashworth J.J., Cameron M., and Kell D.B. Anal. Chem. 79 (2007) 464
52. K.M. Pierce, J.C. Hoggard, R.E. Mohler, R.E. Synovec, J. Chromatogr., A (2007), doi:10.1016/j.chroma.2007.07.059.
53. Welthagen W., Shellie R., Spranger J., Ristow M., Zimmermann R., and Fiehn O. Metabolomics 1 (2005) 65
54. Shellie R.A., Welthagen W., Zrostlikova J., Spranger J., Ristow M., Fiehn O., and Zimmermann R. J. Chromatogr., A 1086 (2005) 83
55. Sinha A.E., Hope J.L., Prazen B.J., Nilsson E.J., Jack R.M., and Synovec R.E. J. Chromatogr., A 1058 (2004) 209
56. Mohler R.E., Dombek K.M., Hoggard J.C., Young E.T., and Synovec R.E. Anal. Chem. 78 (2006) 2700
57. Mohler R.E., Dombek K.M., Hoggard J.C., Pierce K.M., Young E.T., and Synovec R.E. Analyst (Cambridge, UK) 132 (2007) 756
58. Hope J.L., Prazen B.J., Nilsson E.J., Lidstrom M.E., and Synovec R.E. Talanta 65 (2005) 380
59. Wilson I.D., Plumb R., Granger J., Major H., Williams R., and Lenz E.A. J. Chromatogr., B 817 (2005) 67
60. Farag M.A., Huhman D.V., Lei Z., and Sumner L.W. Phytochemistry 68 (2007) 342
61. Farag M.A., Huhman D.V., Dixon R.A., and Sumner L.W. Plant Physiol. 146 (2008) 387
62. Kim J.K., Bamba T., Harada K., Fukusaki E., and Kobayashi A. J. Exp. Bot. 58 (2007) 415
63. Moco S., Bino R.J., Vorst O., Verhoeven H.A., de Groot J., van Beek T.A., Vervoort J., and de Vos C.H.R. Plant Physiol. 141 (2006) 1205
64. De Vos R.C.H., Moco S., Lommen A., Keurentjes J.J.B., Bino R.J., and Hall R.D. Nat. Protoc. 2 (2007) 778
65. Iwasa K., Cui W.H., Sugiura M., Takeuchi A., Moriyasu M., and Takeda K. J. Nat. Prod. 68 (2005) 992
66. Hemström P., and Irgum K. J. Sep. Sci. 29 (2006) 1784
67. Tolstikov V.V., and Fiehn O. Anal. Biochem. 301 (2002) 298
68. Idborg H., Zamani L., Edlund P.O., Schuppe-Koistinen I., and Jacobsson S.P. J. Chromatogr., B 828 (2005) 9
69. Bajad S.U., Lu W., Kimball E.H., Yuan J., Peterson C., and Rabinowitz J.D. J. Chromatogr., A 1125 (2006) 76
70. Wilson I.D., Nicholson J.K., Castro-Perez J., Granger J.H., Johnson K.A., Smith B.W., and Plumb R.S. J. Proteome Res. 4 (2005) 591
71. Plumb R.S., Johnson K.A., Rainville P., Shockcor J.P., Williams R., Granger J.H., and Wilson I.D. Rapid Commun. Mass Spectrom. 20 (2006) 2800
72. Granger J.H., Williams R., Lenz E.M., Plumb R.S., Stumpf C.L., and Wilson I.D. Rapid Commun. Mass Spectrom. 21 (2007) 2039
73. Yin P., Zhao X., Li Q., Wang J., Li J., and Xu G. J. Proteome Res. 5 (2006) 2135
74. Shen Y., Zhang R., Moore R.J., Kim J., Metz T.O., Hixson K.K., Zhao R., Livesay E.A., Udseth H.R., and Smith R.D. Anal. Chem. 77 (2005) 3090
75. Ding J., Sorensen C.M., Zhang Q., Jiang H., Jaitly N., Livesay E.A., Shen Y., Smith R.D., and Metz T.O. Anal. Chem. 79 (2007) 6081
76. Tolstikov V.V., Lommen A., Nakanishi K., Tanaka N., and Fiehn O. Anal. Chem. 75 (2003) 6737
77. P. Dugo, F. Cacciola, T. Kumm, G. Dugo, L. Mondello, J. Chromatogr., A (2007), doi:10.1016/j.chroma.2007.06.074.
78. Stoll D.R., Li X., Wang X., Carr P.W., Porter S.E.G., and Rutan S.C. J. Chromatogr., A 1168 (2007) 3
79. Venkatramani C.J., and Patel A. J. Sep. Sci. 29 (2006) 510
80. François I., de Villiers A., and Sandra P. J. Sep. Sci. 29 (2006) 492
81. Schoenmakers P.J., Vivo-Truyols G., and Decrop W.M.C. J. Chromatogr., A 1120 (2006) 282
82. Seeley J.V. J. Chromatogr., A 962 (2002) 21
83. Horie K., Kimura H., Ikegami T., Iwatsuka A., Saad N., Fiehn O., and Tanaka N. Anal. Chem. 79 (2007) 3764
84. Stoll D.R., Cohen J.D., and Carr P.W. J. Chromatogr., A 1122 (2006) 123
85. Pol J., Hohnova B., and Hyotylainen T. J. Chromatogr., A 1150 (2007) 85
86. Eiceman G.A., and Karpas Z. Ion Mobility Spectrometry (1994), CRC, Boca Raton, FL, USA
87. Matz L.M., Hill H.H., Beegle L.W., and Kanik I. J. Am. Soc. Mass Spectrom. 13 (2002) 300
88. Dwivedi P., Bendiak B., Clowers B.H., and Hill Jr. H.H. J. Am. Soc. Mass Spectrom. 18 (2007) 1163
89. Dwivedi P., Wu C., Matz L.M., Clowers B.H., Seims W.F., and Hill Jr. H.H. Anal. Chem. 78 (2006) 8200
90. Liu X., Valentine S.J., Plasencia M.D., Trimpin S., Naylor S., and Clemmer D.E. J. Am. Soc. Mass Spectrom. 18 (2007) 1249
91. Ruzsanyi V., Baumbach J.I., Sielemann S., Litterst P., Westhoff M., and Freitag L. J. Chromatogr., A 1084 (2005) 145
92. Clowers B.H., and Hill Jr. H.H. J. Mass Spectrom. 41 (2006) 339
93. Matz L.M., and Hill Jr. H.H. Anal. Chem. 73 (2001) 1664
94. Monton M.R.N., and Soga T. J. Chromatogr., A 1168 (2007) 237
95. Zamfir A.D. J. Chromatogr., A 1159 (2007) 2
96. Edwards J.L., Chisolm C.N., Shackman J.G., and Kennedy R.T. J. Chromatogr., A 1106 (2006) 80
97. Ptolemy A.S., and Britz-McKibbin P. J. Chromatogr., A 1106 (2006) 7
98. Lee R., Ptolemy A.S., Niewczas L., and Britz-McKibbin P. Anal. Chem. 79 (2007) 403
99. Mayboroda O.A., Neusüß C., Pelzing M., Zurek G., Derks R., Meulenbelt I., Kloppenburg M., Slagboom E.P., and Deelder A.M. J. Chromatogr., A 1159 (2007) 149
100. Williams B.J., Cameron C.J., Workman R., Broeckling C.D., Sumner L.W., and Smith J.T. Electrophoresis 28 (2007) 1371
101. Tanaka Y., Higashi T., Rakwal R., Wakida S.-I., and Iwahashi H. J. Pharm. Biomed. Anal. 44 (2007) 608
102. Edwards E.L., Rodrigues J.A., Ferreira J., Goodall D.M., Rauter A.P., Justino J., and Thomas-Oates J. Electrophoresis 27 (2006) 2164
103. Soga T., Ohashi Y., Ueno Y., Naraoka H., Tomita M., and Nishioka T. J. Proteome Res. 2 (2003) 488
104. Sato S., Soga T., Nishioka T., and Tomita M. Plant J. 40 (2004) 151
105. Takahashi H., Hayashi M., Goto F., Sato S., Soga T., Nishioka T., Tomita M., Kawai-Yamada M., and Hirofumi U. Ann. Bot. 98 (2006) 819
106. Sturm S., Seger C., and Stuppner H. J. Chromatogr., A 1159 (2007) 42
107. Sumner L., Amberg A., Barrett D., Beale M., Beger R., Daykin C., Fan T., Fiehn O., Goodacre R., Griffin J., Hankemeier T., Hardy N., Harnly J., Higashi R., Kopka J., Lane A., Lindon J., Marriott P., Nicholls A., Reily M., Thaden J., and Viant M. Metabolomics 3 (2007) 211
108. Moco S., Vervoort J., Moco S., Bino R.J., De Vos R.C.H., and Bino R. Trends Anal. Chem. 26 (2007) 855
109. Stoll N., Schmidt E., and Thurow K. J. Am. Soc. Mass Spectrom. 17 (2006) 1692
110. Kind T., and Fiehn O. BMC Bioinformatics 7 (2006) 234
111. Grange A.H., Winnik W., Ferguson P.L., and Sovocool G.W. Rapid Commun. Mass Spectrom. 19 (2005) 2699
112. Kind T., and Fiehn O. BMC Bioinformatics 8 (2007) 105
113. Konishi Y., Kiyota T., Draghici C., Gao J.-M., Yeboah F., Acoca S., Jarussophon S., and Purisima E. Anal. Chem. 79 (2007) 1187
114. Waridel P., Wolfender J.-L., Ndjoko K., Hobby K.R., Major H.J., and Hostettmann K. J. Chromatogr., A 926 (2001) 29
115. Cody R.B., Laramee J.A., and Durst H.D. Anal. Chem. 77 (2005) 2297