Fluorescent in situ hybridization and flow cytometry as tools to evaluate the treatments for the control of slime-forming enterobacteria in paper mills

Applied Microbiology and Biotechnology

Volumn 78, Issue 5, 2008, Pages 889-897

  Torres, C Esperanza ^a   Gibello, Alicia ^a   Nande, Mar ^a   Martin, Margarita ^a   Blanco, Angeles ^a  

^a UNIVERSIDAD COMPLUTENSE DE MADRID   (Spain)

Author keywords

FISH; Flow cytometry; Papermaking; Slime control

Indexed keywords

FLUORESCENCE IN SITU HYBRIDIZATION (FISH); SLIME FORMING ENTEROBACTERIA;

FLOW CYTOMETRY; FLUORESCENCE; PAPER AND PULP MILLS; PAPERMAKING;

BACTERIA;

BIOCIDE; BUTROL 1009; BUTROL 1072; BUZYME; DISPERSANT; ENZYME; PHENYLMERCURY DERIVATIVE; PROTEINASE; RIBOSOME RNA; SPACER DNA; TRIACYLGLYCEROL LIPASE; UNCLASSIFIED DRUG;

BACTERIUM; DETECTION METHOD; FLOW CYTOMETRY; FLUORESCENCE; HYBRIDIZATION; IN SITU MEASUREMENT; MILL; RNA;

ARTICLE; BACTERIAL CELL; BACTERIUM CULTURE; BACTERIUM DETECTION; BIOFILM; CONSENSUS SEQUENCE; ENTEROBACTER AEROGENES; ENTEROBACTERIACEAE; EVALUATION; FLOW CYTOMETRY; FLUORESCENCE IN SITU HYBRIDIZATION; KLEBSIELLA PNEUMONIAE; NONHUMAN; NUCLEOTIDE SEQUENCE; OLIGONUCLEOTIDE PROBE; PAPER INDUSTRY; RAOULTELLA PLANTICOLA;

ANTI-BACTERIAL AGENTS; DNA, BACTERIAL; DNA, RIBOSOMAL SPACER; ENTEROBACTERIACEAE; FLOW CYTOMETRY; IN SITU HYBRIDIZATION, FLUORESCENCE; INDUSTRIAL MICROBIOLOGY; OLIGONUCLEOTIDE PROBES; PAPER; POLYSACCHARIDES, BACTERIAL; RNA, RIBOSOMAL; SENSITIVITY AND SPECIFICITY;

BACTERIA; FLUORESCENCE; PAPER MAKING; PAPER MILLS;

ENTEROBACTER; ENTEROBACTERIACEAE; KLEBSIELLA; RAOULTELLA;

EID: 41049094377     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-008-1369-6     Document Type: Article

References (29)

1. Amann RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143-169
2. Amann RI, Fuchs BM, Behrens S (2001) The identification of microorganisms by fluorescence in situ hybridisation. Curr Opin Biotechnol 12:231-236
3. Armisen TG, Servais P (2004) Combining direct viable count (DVC) and fluorescent in situ hybridisation (FISH) to enumerate viable E. coli in rivers and wastewaters. Water Sci Technol 50:271-275
4. Bachelier S, Clément JM, Hofnung M (1999) Short palindromic repetitive DNA elements in enterobacteria: a survey. Res Microbiol 150:627-639
5. Bathe S, Hausner M (2006) Design and evaluation of 16S rRNA sequence based oligonucleotide probes for the detection and quantification of Comamonas testosteroni in mixed microbial communities. BMC Microbiol 6:54
6. Beauchamp CJ, Simao-Beaunoir AM, Beaulieu C, Chalifour FP (2006) Confirmation of E. coli among other thermotolerant coliform bacteria in paper mill effluents, wood chips screening rejects and paper sludges. Water Res 40:2452-2462
7. Blanco A (2003) Microbiology in papermaking. Recent Res Dev Appl Microbiol Biotechnol 1:87-134
8. Blanco A, Negro C, Gaspar I, Tijero J (1996) Slime problems in the paper and board industry. Appl Microbiol Biotechnol 46:203-208
9. Collado MC, Sanz Y (2007) Quantification of mucosa-adhered microbiota of lambs and calves by the use of culture methods and fluorescent in situ hybridization coupled with flow cytometry techniques. Vet Microbiol 121:299-306
10. Dauga C (2002) Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: a model molecule for molecular systematic studies. Int J Syst Evol Microbiol 52:531-547
11. Drancourt M, Bollet C, Carta A, Rousselier P (2001) Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov. Int J Syst Evol Microbiol 51:925-932
12. Fuchs BM, Zubkov MV, Sahm K, Burkill PH, Amann R (2000) Changes in community composition during dilution cultures of marine bacterioplankton as assessed by flow cytometric and molecular biological techniques. Environ Microbiol 2:191-201
13. Garbi C, Casasus L, Martinez-Alvarez R, Robla JI, Martín M (2006) Biodegradation of oxadiazon by a soil isolated Pseudomonas fluorescens strain CG5: implementation in an herbicide removal reactor and modelling. Water Res 40:1217-1223
14. Gasol JM, Zweifel UL, Peters F, Fuhrman JA, Hagström A (1999) Significance of size and nucleic acid content heterogeneity as measured by flow cytometry in natural planktonic bacteria. Appl Environ Microbiol 65:4475-4483
15. Gauthier F, Archibald F (2001) The ecology of "fecal indicator" bacteria commonly found in pulp and paper mill water systems. Water Res 35:2207-2218
16. Gauthier F, Neufeld JD, Driscoll BT, Archibald F (2000) Coliform bacteria and nitrogen fixation in pulp and paper mill effluent treatment systems. Appl Environ Microbiol 66:5155-5160
17. Hulton CSJ, Higgins CF, Sharp PM (1991) ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium, and other enterobacteria. Mol Microbiol 5:825-834
18. Kempf VAJ, Trebesius K, Autenrieth IB (2000) Fluorescent in situ Hybridization allows rapid identification of microorganisms in blood cultures. J Clin Microbiol 38:830-838
19. Kumar Y, Westram R, Behrens S, Fuchs B, Glöckner FO, Amann R, Meier H, Ludwig W (2005) Graphical representation of ribosomal RNA probe accessibility data using ARB software package. BMC Bioinformatics 6:61
20. Lahtinen T, Kosone M, Tiirola M, Vuento M, Oker-Blom C (2006) Diversity bacteria contaminating paper machines. J Ind Microbiol Biotechnol 33:734-740
21. Neilson AH, Sparell L (1976) Acetylene reduction (nitrogen fixation) by Enterobacteriaceae isolated from paper mill process waters. Appl Environ Microbiol 32:197-205
22. Perdersen K (1982) Method for studying microbial biofilms in flowing-water systems. Appl Environ Microbiol 43:6-13
23. Peters RPH, Savelkoul PHM, Simoons-Smit AM, Danner SA, Vandenbroucke-Grauls CMJE, van Agtmeael MA (2006) Faster identification of pathogens in positive blood cultures by fluorescence in situ hybridization in routine practice. J Clin Microbiol 44:119-123
24. Rättö M, Verhoef R, Suihko M-L, Blanco A, Schols HA, Voragen AGJ, Wilting R, Siika-aho M, Buchert J (2006) Colanic acid is an exopolysaccharide common to many enterobacteria isolated from paper-machine slimes. J Ind Microbiol Biotechnol 33:359-367
25. Sanborn JR (1944) Slime-producing coliform and coliform-like bacteria. J Bacteriol 48:211-217
26. Spröer C, Mendrock U, Swiderski J, Lang E, Stackebrandt E (1999) The phylogenetic position of Serratia, Buttiauxella and some other genera of the family Enterobacteriaceae. Int J Syst Bacteriol 4:1433-1438
27. Väisänen OM, Weber A, Bennasar A, Rainey FA, Busse HJ, Salkinoja-Salonen M (1998) Microbial communities of printing paper machines. J Appl Microbiol 84:1069-1084
28. Wilson LA, Sharp PM (2006) Enterobacterial repetitive intergenic consensus (ERIC) sequences in Escherichia coli: evolution and implications for ERIC-PCR. Mol Biol Evol 23:1156-1168
29. Yilmaz L, Ökten HE, Noguera DR (2006) Making all parts of the 16S rRNA of Escherichia coli accessible in situ to single DNA oligonucleotides. Appl Environ Microbiol 72:733-744