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Volumn 102, Issue 2, 2008, Pages 444-454

Integration of clinical chemistry, expression, and metabolite data leads to better toxicological class separation

Author keywords

Clinical chemistry; Data integration; Metabonomics; Microarray; Toxicology

Indexed keywords

1 NAPHTHYL ISOTHIOCYANATE; DIMETHYLNITROSAMINE; N METHYLFORMAMIDE;

EID: 40949149421     PISSN: 10966080     EISSN: 10960929     Source Type: Journal    
DOI: 10.1093/toxsci/kfn001     Document Type: Article
Times cited : (28)

References (20)
  • 1
    • 40949164100 scopus 로고    scopus 로고
    • Integration of clinical data, pathology, and cDNA microarrays in influenza virus-infected pigtailed macaques (Macaca nemestrina)
    • Baskin, C. R., Garcia-Sastre, A., Tumpey, T. M., Bielefeldt-Ohmann, H., Carter, V. S., Nistal-Villßn, E., and Katze, M. G. (2004). Integration of clinical data, pathology, and cDNA microarrays in influenza virus-infected pigtailed macaques (Macaca nemestrina). J Virol 102(2), 444-454.
    • (2004) J Virol , vol.102 , Issue.2 , pp. 444-454
    • Baskin, C.R.1    Garcia-Sastre, A.2    Tumpey, T.M.3    Bielefeldt-Ohmann, H.4    Carter, V.S.5    Nistal-Villßn, E.6    Katze, M.G.7
  • 2
    • 20544460373 scopus 로고    scopus 로고
    • Temporal and dose-dependent hepatic gene expression patterns in mice provide new insights into TCDD-mediated hepatotoxicity
    • Boverhof, D. R., Burgoon, L. D., Tashim, C., Chittim, B,, Harkema, J. R., Jump, D. B., and Zacharewski, T. R. (2005). Temporal and dose-dependent hepatic gene expression patterns in mice provide new insights into TCDD-mediated hepatotoxicity. Toxicol Sci 85 2), 1048-1063.
    • (2005) Toxicol Sci , vol.85 , Issue.2 , pp. 1048-1063
    • Boverhof, D.R.1    Burgoon, L.D.2    Tashim, C.3    Chittim, B.4    Harkema, J.R.5    Jump, D.B.6    Zacharewski, T.R.7
  • 3
    • 0142134307 scopus 로고    scopus 로고
    • Toxicity classification from metabonomic data using a density superposition approach: 'CLOUDS'
    • Ebbels, T., Keun, H., Beckonert, O., Antti, H., Bollard, M., Holmes, E., Lindon, J., and Nicholson, J. (2003). Toxicity classification from metabonomic data using a density superposition approach: 'CLOUDS'. Anal Chim Acta 490(1-2), 109-122.
    • (2003) Anal Chim Acta , vol.490 , Issue.1-2 , pp. 109-122
    • Ebbels, T.1    Keun, H.2    Beckonert, O.3    Antti, H.4    Bollard, M.5    Holmes, E.6    Lindon, J.7    Nicholson, J.8
  • 6
    • 27944439358 scopus 로고    scopus 로고
    • Chemical Effects in Biological Systems - Data Dictionary (CEBS-DD): A compendium of terms for the capture and integration of biological Study Design Description, conventional phenotypes, and 'Omics data
    • Fostel, J., Choi, D., Zwickl, C.; Morrison, N., Rashid, A., Hasan, A., Bao, W., Richard, A., Tong, W., Bushel, P. R., et al. (2005). Chemical Effects in Biological Systems - Data Dictionary (CEBS-DD): A compendium of terms for the capture and integration of biological Study Design Description, conventional phenotypes, and 'Omics data. Toxicol Sci 88(2), 585-601.
    • (2005) Toxicol Sci , vol.88 , Issue.2 , pp. 585-601
    • Fostel, J.1    Choi, D.2    Zwickl, C.3    Morrison, N.4    Rashid, A.5    Hasan, A.6    Bao, W.7    Richard, A.8    Tong, W.9    Bushel, P.R.10
  • 7
    • 1342288026 scopus 로고    scopus 로고
    • affy - analysis of Affymetrix GeneChip data at the probe level
    • Gautier, L., Cope, L., Bolstad, B. M., and Irizarry, R. A. (2004). affy - analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20(3), 307-315.
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 8
    • 28444475160 scopus 로고    scopus 로고
    • Hwang D., Alistair G. Rust, Stephen Ramsey, Jennifer J. Smith, Deena M. Leslie, Andrea D. Weston, Pedro de Atauri, John D. Aitchison, Leroy Hood, Andrew F. Siegel, et al.. (2005). A data integration methodology for systems biology. Proc Natl Acad Sci U.S.A. 102 48), 17296-17301.
    • Hwang D., Alistair G. Rust, Stephen Ramsey, Jennifer J. Smith, Deena M. Leslie, Andrea D. Weston, Pedro de Atauri, John D. Aitchison, Leroy Hood, Andrew F. Siegel, et al.. (2005). A data integration methodology for systems biology. Proc Natl Acad Sci U.S.A. 102 48), 17296-17301.
  • 9
    • 26944489574 scopus 로고    scopus 로고
    • The Consortium for Metabonomic Toxicology (COMET): Aims, activities and achievements
    • Lindon, J. C., Keun, H. C., Ebbels, T. M. D., Pearce, J. M. T., Holmes, E., and Nicholson, J. K. (2005). The Consortium for Metabonomic Toxicology (COMET): Aims, activities and achievements. Pharmacogenomics 6(7), 691-699.
    • (2005) Pharmacogenomics , vol.6 , Issue.7 , pp. 691-699
    • Lindon, J.C.1    Keun, H.C.2    Ebbels, T.M.D.3    Pearce, J.M.T.4    Holmes, E.5    Nicholson, J.K.6
  • 12
    • 5044229817 scopus 로고    scopus 로고
    • The challenges of modeling mammalian biocomplexity
    • Nicholson, J. K., Holmes, E., Lindon, J. C., and Wilson, I. D. (2004). The challenges of modeling mammalian biocomplexity. Nat Biotechnol 22(10), 1268-1274.
    • (2004) Nat Biotechnol , vol.22 , Issue.10 , pp. 1268-1274
    • Nicholson, J.K.1    Holmes, E.2    Lindon, J.C.3    Wilson, I.D.4
  • 13
    • 20044396570 scopus 로고    scopus 로고
    • Integrative analysis of the cancer transcriptome
    • Rhodes, D. R., and Chinnaiyan, A. M. (2005). Integrative analysis of the cancer transcriptome. Nat Genet 37(6 Suppl.), S31-S37.
    • (2005) Nat Genet , vol.37 , Issue.6 SUPPL.
    • Rhodes, D.R.1    Chinnaiyan, A.M.2
  • 15
    • 0035992226 scopus 로고    scopus 로고
    • Mantel statistics to correlate genee expression levels from microarrays with clinical covariates
    • Shannon, W. D., Watson, A., Perry, A., and Rich, K. (2002). Mantel statistics to correlate genee expression levels from microarrays with clinical covariates. Genet Epidemiol 23, 87-96.
    • (2002) Genet Epidemiol , vol.23 , pp. 87-96
    • Shannon, W.D.1    Watson, A.2    Perry, A.3    Rich, K.4
  • 16
    • 0037434980 scopus 로고    scopus 로고
    • From genomics to proteomics
    • Tyers, M., and Mann, M. (2003). From genomics to proteomics. Nature 422(6928), 193-197.
    • (2003) Nature , vol.422 , Issue.6928 , pp. 193-197
    • Tyers, M.1    Mann, M.2
  • 17
    • 0000736392 scopus 로고    scopus 로고
    • Analysis of multiblock and hierarchical PCA and PLS models
    • Westerhuis, J., Kourti, T., and MacGregor, J. F. (1998). Analysis of multiblock and hierarchical PCA and PLS models. J Chemo 12, 301.
    • (1998) J Chemo , vol.12 , pp. 301
    • Westerhuis, J.1    Kourti, T.2    MacGregor, J.F.3
  • 18
  • 19
    • 0001369487 scopus 로고    scopus 로고
    • Hierarchical multiblock PLS and PC models for easier model interpretation and as an alternative to variable selection
    • Wold, S., Kettaneh, N., and Tjessem, K. (1996). Hierarchical multiblock PLS and PC models for easier model interpretation and as an alternative to variable selection. J Chemo 10, 462.
    • (1996) J Chemo , vol.10 , pp. 462
    • Wold, S.1    Kettaneh, N.2    Tjessem, K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.