Chemical Effects in Biological Systems - Data Dictionary (CEBS-DD): A compendium of terms for the capture and integration of biological Study Design Description, conventional phenotypes, and 'Omics data

Toxicological Sciences

Volumn 88, Issue 2, 2005, Pages 585-601

  Fostel, Jennifer ^a   Choi, Danielle ^a   Zwickl, Craig ^b   Morrison, Norman ^c   Rashid, Asif ^a,d   Hasan, Atif ^d   Bao, Wenjun ^e   Richard, Ann ^e   Tong, Weida ^f   Bushel, Pierre R ^g   Brown, Roger ^h   Bruno, Maribel ^g   Cunningham, Michael L ⁱ   Dix, David ^e   Eastin, William ⁱ   Frade, Carlos ^j   Garcia, Alex ^k   Heinloth, Alexandra ^g   Irwin, Rick ⁱ   Madenspacher, Jennifer ^g   Merrick, B Alex ^g   Papoian, Thomas ^l   Paules, Richard ^g   Rocca Serra, Philippe ^k   Sansone, Assunta Susanna ^k   Stevens, James ^b   Tomer, Kenneth ^g   Yang, Chihae ^m   Waters, Michael ^g   more..

^a LIMT Lockheed Martin Information Technology   (United States)

^b ELI LILLY AND COMPANY   (United States)

^c UNIVERSITY OF MANCHESTER   (United Kingdom)

^d Alpha Gamma Technologies Inc   (United States)

^e U S ENVIRONMENTAL PROTECTION AGENCY   (United States)

^f US National Center for Toxicogenomics Research   (United States)

^g Toxicogenomics   (United States)

^h GLAXOSMITHKLINE   (United States)

ⁱ NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES   (United States)

^j Xybion Corporation   (United States)

^k EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^l CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

^m Leadscope Inc   (United States)

more..

Author keywords

Acetaminophen; Chemical Effects in Biological Systems (CEBS) Knowledgebase; Phenotypic anchor; Toxicity endpoint data; Toxicogenomics study protocols

Indexed keywords

PARACETAMOL;

ARTICLE; DATA BASE; EXPERIMENTAL DESIGN; HISTOPATHOLOGY; INFORMATION PROCESSING; MOLECULAR DYNAMICS; NOMENCLATURE; NONHUMAN; PHENOTYPE; PROTEOMICS; STANDARDIZATION; TOXICITY TESTING; TOXICOGENETICS; TRANSCRIPTOMICS;

ACETAMINOPHEN; ADMINISTRATION, ORAL; ANIMALS; BIOMEDICAL RESEARCH; DATABASE MANAGEMENT SYSTEMS; DATABASES, FACTUAL; DOSE-RESPONSE RELATIONSHIP, DRUG; PROTEOMICS; RESEARCH DESIGN; SYSTEMS BIOLOGY; TERMINOLOGY; TOXICITY TESTS; TOXICOGENETICS;

EID: 27944439358     PISSN: 10966080     EISSN: 10960929     Source Type: Journal    
DOI: 10.1093/toxsci/kfi315     Document Type: Article

References (12)

1. Bao, W., Schmid, J. E., Goetz, A. K., Ren, H., and Dix, D. J. (2005). A database for tracking toxicogenomics samples and procedures. Reprod. Toxicol. 19, 411-419.
2. Benz, R. D., Arvidson, K., Cheeseman, M., Fostel, J., Hollingshaus, G., Johnson, D., Johnson, W., Kemper, R., Lee, P., Mathews, E., et al. (2005). ToxML, An Endpoint Specific Database Ontology For Linking Toxicology To Chemistry. Submitted.
3. Boorman, G., Irwin, R. D., Vallant, M. K., Gerken, D. K., Lobenhofer, E. K., Hejtmancik, M. R., Hurban, P., Brys, A. M., Travlos, G. S., Parker, J. S., and Portier, C. J. (2005). Variation in the hepatic gene expression in individual male Fischer rats. Toxicol. Pathol. 33, 102-110.
4. Deutsch, E. (2004). MISFISHIE... Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE). scgap.systemsbiology.net/standards/misfishie/
5. Heinloth, A. N., Boorman, G. A., Nettesheim, P., Fannin, R. D., Sieber, S. O., Snell, M. L., Tucker, C. J., Li, L., Travlos, G. S., Vansant, G., et al. (2004). Gene expression profiling of rat livers reveals indicators of potential adverse effects. Toxicol. Sci. 80, 193-202.
6. Irwin, R., Boorman, G. A., Waters, M. D., Hardisty, J. F., and Sills, R. C. (2002). Quality review procedures necessary for rodent pathology databases and toxicogenomic studies: The National Toxicology Program experience. Toxicol. Pathol. 30, 88-92.
7. Richard, A., and Williams, C. R. (2002). Distributed structure-searchable toxicity (DSSTox) public database network: A proposal. Mutat. Res. 499, 27-52.
8. Tong, W., Harris, S., Sun, H., Fang, H., Fuscoe, J., Harris, A., Hong, H., Xie, Q., Perkins, R., Shi, L., et al. (2003). ArrayTrack-supporting toxicogenomic research at the U.S. Food, and Drug Administration National Center for Toxicological Research. Environ. Health Perspect. Toxicogenomics 111, 1819-1826.
9. Tong, W., Harris, S., Cao, X., Fang, H., Shi, L., Sun, H., Fuscoe, J., Harris, A., Hong, H., and Xie, O. (2004). Development of public toxicogenomics software for microarray data management and analysis. Mutat. Res./Fundam. Mol. Mechanisms Mutagen. 549, 241-253.
10. Waters, M., Boorman, G., Bushel, P., Cunningham, M., Irwin, R., Merrick, A., Olden, K., Paules, R., Selkirk, J., Stasiewicz, S., Weis, B., Van Houten, B., Walker, N., and Tennant, R. (2003). Systems toxicology and the Chemical Effects in Biological Systems (CEBS) knowledge base. Environ. Health Perspect. Toxicogenomics 111, 15-28.
11. Waters, M. D. (2004). The CEBS Knowledge Base: The Integration of Molecular Profiling, Toxicology and Pathology Datasets for Knowledge Discovery. Presented at the 43rd Annual Meeting of the Society of Toxicology, Baltimore, MD, March 21-25, 2004.
12. S. Consortium Standard for Exchange of Non-clinical Data. (Abstract)