-
1
-
-
0035971093
-
Interacting fidelity defects in the replicative DNA polymerase of bacteriophage RB69
-
BEBENEK, A., H. K. DRESSMAN, G. T. CARVER, S. NG, V. PETROV et al., 2001 Interacting fidelity defects in the replicative DNA polymerase of bacteriophage RB69. J. Biol. Chem. 276: 10387-10397.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 10387-10397
-
-
BEBENEK, A.1
DRESSMAN, H.K.2
CARVER, G.T.3
NG, S.4
PETROV, V.5
-
2
-
-
0027215750
-
Error-prone polymerization by HIV-1 reverse transcriptase: Contribution of template-primermisalignment, miscoding and termination probability to mutational hot spots
-
BEBENEK, K., J. ABBOTTS, S. H. WILSON and T. A. KUNKEL, 1993 Error-prone polymerization by HIV-1 reverse transcriptase: contribution of template-primermisalignment, miscoding and termination probability to mutational hot spots. J. Biol. Chem. 268: 10324-10334.
-
(1993)
J. Biol. Chem
, vol.268
, pp. 10324-10334
-
-
BEBENEK, K.1
ABBOTTS, J.2
WILSON, S.H.3
KUNKEL, T.A.4
-
3
-
-
0001434413
-
On the topography of the genetic fine structure
-
BENZER, S., 1961 On the topography of the genetic fine structure. Proc. Natl. Acad. Sci. USA 47: 403-415.
-
(1961)
Proc. Natl. Acad. Sci. USA
, vol.47
, pp. 403-415
-
-
BENZER, S.1
-
4
-
-
33745176286
-
Displacement of a DNA binding protein by Dda helicase
-
BYRD, A. K., and K. D. RANEY, 2006 Displacement of a DNA binding protein by Dda helicase. Nucleic Acids Res. 34: 3020-3029.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 3020-3029
-
-
BYRD, A.K.1
RANEY, K.D.2
-
5
-
-
0019219951
-
Determination of mutation rates in bacteriophage T4 by unneighborly base pairs: Genetic analysis
-
CONKLING, M. A., R. E. KOCH and J. W. DRAKE, 1980 Determination of mutation rates in bacteriophage T4 by unneighborly base pairs: genetic analysis. J. Mol. Biol. 143: 303-315.
-
(1980)
J. Mol. Biol
, vol.143
, pp. 303-315
-
-
CONKLING, M.A.1
KOCH, R.E.2
DRAKE, J.W.3
-
6
-
-
14644411671
-
Mechanistic studies of the T4 DNA (gp41) replication helicase: Functional interactions of the C-terminal tails of the helicase subunits with the T4 (gp59) helicase loader protein
-
DELAGOUTTE, E., and P. H. VON HIPPEL, 2005 Mechanistic studies of the T4 DNA (gp41) replication helicase: functional interactions of the C-terminal tails of the helicase subunits with the T4 (gp59) helicase loader protein. J. Mol. Biol. 347: 257-275.
-
(2005)
J. Mol. Biol
, vol.347
, pp. 257-275
-
-
DELAGOUTTE, E.1
VON HIPPEL, P.H.2
-
7
-
-
0002680353
-
Mutagenesis
-
edited by J. D. KARAM. American Society for Microbiology, Washington, DC
-
DRAKE, J. W., and L. S. RIPLEY, 1994 Mutagenesis, pp. 98-124 in Molecular Biology of Bacteriophage T4, edited by J. D. KARAM. American Society for Microbiology, Washington, DC.
-
(1994)
Molecular Biology of Bacteriophage T4
, pp. 98-124
-
-
DRAKE, J.W.1
RIPLEY, L.S.2
-
8
-
-
0030860785
-
Retention of replication fidelity by a DNA polymerase in a homeologous environment
-
DRESSMAN, H., C.-C. WANG, J. D. KARAM and J. W. DRAKE, 1997 Retention of replication fidelity by a DNA polymerase in a homeologous environment. Proc. Natl. Acad. Sci. USA 94: 8042-8046.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 8042-8046
-
-
DRESSMAN, H.1
WANG, C.-C.2
KARAM, J.D.3
DRAKE, J.W.4
-
9
-
-
0017109724
-
Replicative bypass repair of ultraviolet damage to DNA of mammalian cells: Caffeine sensitive and caffeine resistant mechanisms
-
FUJIWARA, Y., and M. TATSUMI, 1976 Replicative bypass repair of ultraviolet damage to DNA of mammalian cells: caffeine sensitive and caffeine resistant mechanisms. Mutat. Res. 377: 91-110.
-
(1976)
Mutat. Res
, vol.377
, pp. 91-110
-
-
FUJIWARA, Y.1
TATSUMI, M.2
-
10
-
-
0017298802
-
A model for replication repair in mammalian cells
-
HIGGINS, N. P., K. KATO and B. STRAUSS, 1976 A model for replication repair in mammalian cells. J. Mol. Biol. 101: 417-425.
-
(1976)
J. Mol. Biol
, vol.101
, pp. 417-425
-
-
HIGGINS, N.P.1
KATO, K.2
STRAUSS, B.3
-
11
-
-
0041589437
-
Properties of bacteriophage T4 proteins deficient in replication repair
-
KADYROV, F. A., and J. W. DRAKE, 2003 Properties of bacteriophage T4 proteins deficient in replication repair. J. Biol. Chem. 278: 25247-25255.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 25247-25255
-
-
KADYROV, F.A.1
DRAKE, J.W.2
-
12
-
-
4143084041
-
UvsX recombinase and Dda helicase rescue stalled bacteriophage T4 DNA replication forks in vitro
-
KADYROV, F. A., and J. W. DRAKE, 2004 UvsX recombinase and Dda helicase rescue stalled bacteriophage T4 DNA replication forks in vitro. J. Biol. Chem. 279: 35735-35740.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 35735-35740
-
-
KADYROV, F.A.1
DRAKE, J.W.2
-
13
-
-
0015040252
-
The influence of neighboring base pairs upon base-pair substitution mutation rates
-
KOCH, R. E., 1971 The influence of neighboring base pairs upon base-pair substitution mutation rates. Proc. Natl. Acad. Sci. USA 68: 773-776.
-
(1971)
Proc. Natl. Acad. Sci. USA
, vol.68
, pp. 773-776
-
-
KOCH, R.E.1
-
14
-
-
0001788928
-
Initiation of DNA replication
-
edited by J. D. KARAM. American Society for Microbiology, Washington, DC
-
KREUZER, K. N., and S. W. MORRICAL, 1994 Initiation of DNA replication, pp. 28-42 in The Molecular Biology of Bacteriophage T4, edited by J. D. KARAM. American Society for Microbiology, Washington, DC.
-
(1994)
The Molecular Biology of Bacteriophage T4
, pp. 28-42
-
-
KREUZER, K.N.1
MORRICAL, S.W.2
-
15
-
-
0023790391
-
Mutagenesis by transient misalignment
-
KUNKEL, T. A., and A. SONI, 1988 Mutagenesis by transient misalignment. J. Biol. Chem. 263: 14784-14789.
-
(1988)
J. Biol. Chem
, vol.263
, pp. 14784-14789
-
-
KUNKEL, T.A.1
SONI, A.2
-
16
-
-
33748755117
-
Dynamics of bacteriophage T4 presynaptic filament assembly from extrinsic fluorescence measurements of pg32-single-stranded DNA interactions
-
LIU, J., N. QIAN and S. W. MORRICAL, 2006 Dynamics of bacteriophage T4 presynaptic filament assembly from extrinsic fluorescence measurements of pg32-single-stranded DNA interactions. J. Biol. Chem. 281: 26308-26319.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 26308-26319
-
-
LIU, J.1
QIAN, N.2
MORRICAL, S.W.3
-
17
-
-
2442450532
-
Dual functions of single-stranded DNA-binding protein in helicase loading at the bacteriophage T4 DNA replication fork
-
MA, Y., T. WANG, J. L. VILLEMAIN, D. P. GIEDROC and S. W. MORRICAL, 2004 Dual functions of single-stranded DNA-binding protein in helicase loading at the bacteriophage T4 DNA replication fork. J. Biol. Chem. 279: 19035-19045.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 19035-19045
-
-
MA, Y.1
WANG, T.2
VILLEMAIN, J.L.3
GIEDROC, D.P.4
MORRICAL, S.W.5
-
18
-
-
0002477967
-
The DNA replication fork
-
edited by J. D. KARAM. American Society for Microbiology, Washington, DC
-
NOSSAL, N. G., 1994 The DNA replication fork, pp. 43-53 in Molecular Biology of Bacteriophage T4, edited by J. D. KARAM. American Society for Microbiology, Washington, DC.
-
(1994)
Molecular Biology of Bacteriophage T4
, pp. 43-53
-
-
NOSSAL, N.G.1
-
19
-
-
0019996140
-
Model for the participation of quasi-palindromic DNA sequences in frameshift mutation
-
RIPLEY, L. S., 1982 Model for the participation of quasi-palindromic DNA sequences in frameshift mutation. Proc. Natl. Acad. Sci. USA 79: 4128-4132.
-
(1982)
Proc. Natl. Acad. Sci. USA
, vol.79
, pp. 4128-4132
-
-
RIPLEY, L.S.1
-
20
-
-
0022971767
-
Spectrum of spontaneous frameshift mutations. Sequences of bacteriophage T4 rII gene frameshifts
-
RIPLEY, L. S., A. CLARK and J. G. DEBOER, 1986 Spectrum of spontaneous frameshift mutations. Sequences of bacteriophage T4 rII gene frameshifts. J. Mol. Biol. 191: 601-613.
-
(1986)
J. Mol. Biol
, vol.191
, pp. 601-613
-
-
RIPLEY, L.S.1
CLARK, A.2
DEBOER, J.G.3
-
21
-
-
0017283903
-
Mutagen specificity and position effects on mutation in T4rII nonsense sites
-
RONEN, A., and A. RAHAT, 1976 Mutagen specificity and position effects on mutation in T4rII nonsense sites. Mutat. Res. 34: 21-34.
-
(1976)
Mutat. Res
, vol.34
, pp. 21-34
-
-
RONEN, A.1
RAHAT, A.2
-
22
-
-
0017201107
-
Marker effects on reversion of T4rII mutants
-
RONEN, A., A. RAHAT and C. HALEVY, 1976 Marker effects on reversion of T4rII mutants. Genetics 84: 423-436.
-
(1976)
Genetics
, vol.84
, pp. 423-436
-
-
RONEN, A.1
RAHAT, A.2
HALEVY, C.3
-
23
-
-
0031556020
-
Leading strand specific spontaneous mutation corrects a quasipalindrome by an intermolecular strand switch mechanism
-
ROSCHE, W. A., T. Q. TRINH and R. R. SINDEN, 1997 Leading strand specific spontaneous mutation corrects a quasipalindrome by an intermolecular strand switch mechanism. J. Mol. Biol. 269: 176-187.
-
(1997)
J. Mol. Biol
, vol.269
, pp. 176-187
-
-
ROSCHE, W.A.1
TRINH, T.Q.2
SINDEN, R.R.3
-
24
-
-
0015138608
-
Neighbor effects in the mutation of ochre triplets in the T4rII gene
-
SALTS, Y., and A. RONEN, 1971 Neighbor effects in the mutation of ochre triplets in the T4rII gene. Mutat. Res. 13: 109-113.
-
(1971)
Mutat. Res
, vol.13
, pp. 109-113
-
-
SALTS, Y.1
RONEN, A.2
-
25
-
-
33646095509
-
A role for replication repair in the genesis of templated mutations
-
SCHULTZ, G. E., JR., G. T. CARVER and J. W. DRAKE, 2006 A role for replication repair in the genesis of templated mutations. J. Mol. Biol. 358: 963-973.
-
(2006)
J. Mol. Biol
, vol.358
, pp. 963-973
-
-
SCHULTZ JR., G.E.1
CARVER, G.T.2
DRAKE, J.W.3
-
26
-
-
0026094778
-
Marker-dependent recombination in T4 bacteriophage. III. Structural prerequisites for marker discrimination
-
SHCHERBAKOV, V. P., and L. A. PLUGINA, 1991 Marker-dependent recombination in T4 bacteriophage. III. Structural prerequisites for marker discrimination. Genetics 128: 673-685.
-
(1991)
Genetics
, vol.128
, pp. 673-685
-
-
SHCHERBAKOV, V.P.1
PLUGINA, L.A.2
-
27
-
-
0028953666
-
Marker-dependent recombination in T4 bacteriophage. IV. Recombinational effects of antimutator T4 DNA polymerase
-
SHCHERBAKOV, V. P., L. A. PLUGINA and E. A. KUDRYASHOVA, 1995 Marker-dependent recombination in T4 bacteriophage. IV. Recombinational effects of antimutator T4 DNA polymerase. Genetics 140: 13-25.
-
(1995)
Genetics
, vol.140
, pp. 13-25
-
-
SHCHERBAKOV, V.P.1
PLUGINA, L.A.2
KUDRYASHOVA, E.A.3
-
28
-
-
0023645046
-
Sequences and studies of bacteriophage T4 rII mutants
-
SHINEDLING, S., B. S. SINGER, M. GAYLE, D. PRIBNOW, E. JARVIS et al., 1987 Sequences and studies of bacteriophage T4 rII mutants. J. Mol. Biol. 195: 471-480.
-
(1987)
J. Mol. Biol
, vol.195
, pp. 471-480
-
-
SHINEDLING, S.1
SINGER, B.S.2
GAYLE, M.3
PRIBNOW, D.4
JARVIS, E.5
-
29
-
-
0021988148
-
Mechanisms of spontaneous and induced frameshift mutation in bacteriophage T4
-
STREISINGER, G., and J. OWEN, 1985 Mechanisms of spontaneous and induced frameshift mutation in bacteriophage T4. Genetics 109: 633-659.
-
(1985)
Genetics
, vol.109
, pp. 633-659
-
-
STREISINGER, G.1
OWEN, J.2
-
30
-
-
0021724001
-
Modulation of mutation rates in bacteriophage T4 by a base-pair change a dozen nucleotides removed
-
SUGINO, A., and J. W. DRAKE, 1984 Modulation of mutation rates in bacteriophage T4 by a base-pair change a dozen nucleotides removed. J. Mol. Biol. 176: 239-249.
-
(1984)
J. Mol. Biol
, vol.176
, pp. 239-249
-
-
SUGINO, A.1
DRAKE, J.W.2
-
31
-
-
0026419949
-
Preferential DNA secondary structure mutagenesis in the lagging strand of replication in E. coli
-
TRINH, T. Q., and R. R. SINDEN, 1991 Preferential DNA secondary structure mutagenesis in the lagging strand of replication in E. coli. Nature 352: 544-547.
-
(1991)
Nature
, vol.352
, pp. 544-547
-
-
TRINH, T.Q.1
SINDEN, R.R.2
-
32
-
-
0034613267
-
Mutations in the N-terminal cooperativity domain of gene 32 protein alter properties of the T4 DNA replication and recombination systems
-
VILLEMAIN, J. W., Y. MA, D. P. GIEDROC and S. W. MORRICAL, 2000 Mutations in the N-terminal cooperativity domain of gene 32 protein alter properties of the T4 DNA replication and recombination systems. J. Biol. Chem. 275: 31496-31504.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 31496-31504
-
-
VILLEMAIN, J.W.1
MA, Y.2
GIEDROC, D.P.3
MORRICAL, S.W.4
-
33
-
-
0034703487
-
A novel mutational hotspot in a natural quasipalindrome in Escherichia coli
-
VISWANATHAN, M., J. U. LACIRIGNOLA, R. L. HURLEY and S. T. LOVETT, 2000 A novel mutational hotspot in a natural quasipalindrome in Escherichia coli. J. Mol. Biol. 302: 553-564.
-
(2000)
J. Mol. Biol
, vol.302
, pp. 553-564
-
-
VISWANATHAN, M.1
LACIRIGNOLA, J.U.2
HURLEY, R.L.3
LOVETT, S.T.4
-
34
-
-
0023097058
-
replication repair
-
1987 A new epistasis group for the repair of DNA damage in bacteriophage T4
-
WACHSMAN, J. T., and J. W. DRAKE, 1987 A new epistasis group for the repair of DNA damage in bacteriophage T4: replication repair. Genetics 115: 405-417.
-
Genetics
, vol.115
, pp. 405-417
-
-
WACHSMAN, J.T.1
DRAKE, J.W.2
-
35
-
-
36348937182
-
The phage T4 protein UvsW drives Holliday junction branch migration
-
WEBB, M. R., J. L. PLANK, D. T. LONG, T. HSIEH and K. N. KREUZER, 2007 The phage T4 protein UvsW drives Holliday junction branch migration. J. Biol. Chem. 282: 34401-34411.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 34401-34411
-
-
WEBB, M.R.1
PLANK, J.L.2
LONG, D.T.3
HSIEH, T.4
KREUZER, K.N.5
-
36
-
-
19644375053
-
Interaction between the T4 helicase loading protein (gp59) and the DNA polymerase (gp43): Unlocking of the gp59-gp43-DNA complex to initiate assembly of a fully functional replisome
-
XI, J., Z. ZHANG, Z. ZHUANG, J. YANG, M. M. SPIERING et al., 2005 Interaction between the T4 helicase loading protein (gp59) and the DNA polymerase (gp43): unlocking of the gp59-gp43-DNA complex to initiate assembly of a fully functional replisome. Biochemistry 44: 7747-7756.
-
(2005)
Biochemistry
, vol.44
, pp. 7747-7756
-
-
XI, J.1
ZHANG, Z.2
ZHUANG, Z.3
YANG, J.4
SPIERING, M.M.5
-
37
-
-
0037436387
-
Spontaneous hotspot mutations resistant to mismatch correction in Escherichia coli: Transcription-dependent mutagenesis involving template-switching mechanisms
-
YOSHIYAMA, K., and H. MAKI, 2003 Spontaneous hotspot mutations resistant to mismatch correction in Escherichia coli: transcription-dependent mutagenesis involving template-switching mechanisms. J. Mol. Biol. 327: 7-18.
-
(2003)
J. Mol. Biol
, vol.327
, pp. 7-18
-
-
YOSHIYAMA, K.1
MAKI, H.2
-
38
-
-
0035853297
-
Directionality of DNA replication fork movement strongly affects the generation of spontaneous mutations in Escherichia coli
-
YOSHIYAMA, K., K. HIGUCHI, H. MATSUMURA and H. MAKI, 2001 Directionality of DNA replication fork movement strongly affects the generation of spontaneous mutations in Escherichia coli. J. Mol. Biol. 307: 1195-1206.
-
(2001)
J. Mol. Biol
, vol.307
, pp. 1195-1206
-
-
YOSHIYAMA, K.1
HIGUCHI, K.2
MATSUMURA, H.3
MAKI, H.4
-
39
-
-
14744278444
-
Assembly of the bacteriophage T4 primosome: Single-molecule and ensemble studies
-
ZHANG, Z., M. M. SPIERING, M. A. TRAKSELIS, F. T. ISHMAEL, J. XI et al., 2005 Assembly of the bacteriophage T4 primosome: single-molecule and ensemble studies. Proc. Natl. Acad. Sci. USA 102: 3254-3259.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 3254-3259
-
-
ZHANG, Z.1
SPIERING, M.M.2
TRAKSELIS, M.A.3
ISHMAEL, F.T.4
XI, J.5
|